Rh7BG029400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000424
Physical Location & Seq
Reverse (-)
1997683 .. 1999328
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG029400.1

Sequence Viewer

Length: 1245 bp
ATGCAACAGAAAGAACAAGGTGTTGTTTCAACAAATGAACTAGAAGAAACAAAGCAATGCAGCCTTTTCGGCACATCAGACATCCCACAAGAGTTGATCTTTGATATCCTTGCAAGGCTGTCAACCAAAGATTTGATTAGACTCATGTGCGTTTCTAAAGCATGGAATGCTGCCATCCAAGACCCACAATTGGCCAAACTGCATCTCCATCTCTCCATCAAGATCATCAACTCTTTGGATCCCACCTTTTATATTCTTTCATCTGTACATCTATCAGATGACTTTTATCCAGTGGCCTTGTTCAACAATAACACAAAGGGTAGAGTTGTGAAAGTTAAGCATCGATCAAAACAGGTTCAGCAAAGAGCTAGCATCTTAGGTTACTGTAATGGTTTGCTTTGCATTTCTGGATGGTCTAGGGATGTCAATGAATATGAAGACTTTGGTTTGTGGAATCCAACAATACAAAAGTTCAAGAAGATTCCCTTGTCAGCCTTCAGTAAATTCACGAAGAGGGAAACCTTTTATGGATTCGGGTATGATTCAGTTAACGACGATTATAAATTTGTGAGATTGGCACAGTTTGAGGATCATCATCGGAGTGGTGTTGTTACAAGTTCGGAAGTGCAGGTCTACAGTCTAAAATCGCACTTATGGAAAAGGATCCAAGACTTGCCTGCTCATCTTAACAAAGATTTTGAACTTGCCTCTATAGGGGTTTGTGTTGACGGTGCTTTACATTGGTTGATGAGATTACGTGGTGAAAGTGTAAGAGGGATAATAGTTCTAACCCTTCATCTCACAACTGAAGAGTATCACTGGTTTTCTACCCCTGATTATAATTATCCATGTCGCTGTGCAGATTCAAAGGACGAGCGTAAAAACAGGCACTGTTTGTTTTTGCAAGTTTTGGGAGGGTGCTTATGTTTTCGATTCCAATGTGATCTCCTGGATGCTTGGATTTTGAAGGAAAATGGAGTTGCCGAATCATGGACTAAACTTTATTCTACTAAGGAATTGCCCGAGTTATTTTCCTGCCAGCCTTTGATGCTTTCTGAGTGTGGTAAAATGGTTCTTTTCTCAAATCACTTTGGGAACACTTTCTGGTTTGATTTAGAGAATAAGAAACGTATAGTGGTGGCCAGACCCGATGAACGTGTTTTTGGCTTTGACACGTTAATTACTTGTCAAACCCTTCATCTTCTTAGGAGGCGACCAGAGCTTCCTTGTAATTACTGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

414

Amino Acids

48.0

Weight (kDa)

8.08

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 26 - 64 2.1e-10 F-box domain
F-box-like PF12937 26 - 64 4.5e-10 F-box-like
FBA_3 PF08268 110 - 323 5.8e-18 F-box associated beta propeller domain
FBA_1 PF07734 113 - 371 1.2e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 561, 840
Acc36I ACCTGC 1 cut(s) 619
AccI GTMKAC 1 cut(s) 633
AclWI GGATC 5 cut(s) 233, 246, 597, 658, 671
AcoI YGGCCR 2 cut(s) 192, 1140
AcsI RAATTY 2 cut(s) 503, 563
AcuI CTGAAG 2 cut(s) 481, 828
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 3 cut(s) 190, 714, 990
AflIII ACRYGT 2 cut(s) 1156, 1173
AgsI TTSAA 6 cut(s) 30, 304, 475, 701, 867, 967
AjnI CCWGG 1 cut(s) 948
AjuI GAANNNNNNNTTGG 2 cut(s) 1146, 1178
AluBI AGCT 2 cut(s) 368, 1222
AluI AGCT 2 cut(s) 368, 1222
AlwI GGATC 5 cut(s) 233, 246, 597, 658, 671
AlwNI CAGNNNCTG 1 cut(s) 891
Ama87I CYCGRG 1 cut(s) 1022
AoxI GGCC 3 cut(s) 192, 294, 1140
ApeKI GCWGC 2 cut(s) 60, 170
ApoI RAATTY 2 cut(s) 503, 563
Asp700I GAANNNNTTC 1 cut(s) 1100
AsuHPI GGTGA 1 cut(s) 773
AsuNHI GCTAGC 1 cut(s) 368
AvaI CYCGRG 1 cut(s) 1022
BalI TGGCCA 2 cut(s) 194, 1142
BamHI GGATCC 2 cut(s) 238, 663
BbsI GAAGAC 1 cut(s) 444
BbvI GCAGC 2 cut(s) 72, 157
BccI CCATC 4 cut(s) 182, 216, 224, 405
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 1 cut(s) 950
BfaI CTAG 3 cut(s) 41, 369, 417
BfmI CTRYAG 2 cut(s) 634, 711
BfuAI ACCTGC 1 cut(s) 619
BglI GCCNNNNNGGC 1 cut(s) 69
BisI GCNGC 2 cut(s) 61, 171
BlsI GCNGC 2 cut(s) 62, 172
Bme1390I CCNGG 1 cut(s) 950
BmeT110I CYCGRG 1 cut(s) 1022
BmiI GGNNCC 2 cut(s) 240, 665
BmrFI CCNGG 1 cut(s) 950
BmsI GCATC 5 cut(s) 211, 349, 381, 943, 1038
BmtI GCTAGC 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 444
Bsa29I ATCGAT 1 cut(s) 343
BsaAI YACGTR 1 cut(s) 758
BsaBI GATNNNNATC 1 cut(s) 594
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 714, 990
Bse1I ACTGG 2 cut(s) 290, 824
Bse3DI GCAATG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 1 cut(s) 950
BseCI ATCGAT 1 cut(s) 343
BseGI GGATG 5 cut(s) 81, 174, 416, 427, 958
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 3 cut(s) 190, 714, 990
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 1047
BseNI ACTGG 2 cut(s) 290, 824
BseXI GCAGC 2 cut(s) 72, 157
BsgI GTGCAG 2 cut(s) 647, 879
BshFI GGCC 3 cut(s) 194, 296, 1142
BshVI ATCGAT 1 cut(s) 343
BsiHKCI CYCGRG 1 cut(s) 1022
BslI CCNNNNNNNGG 3 cut(s) 190, 714, 990
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 3 cut(s) 194, 296, 1142
BsoBI CYCGRG 1 cut(s) 1022
Bsp1407I TGTACA 1 cut(s) 265
Bsp143I GATC 7 cut(s) 96, 222, 238, 344, 589, 663, 943
BspANI GGCC 3 cut(s) 194, 296, 1142
BspCNI CTCAG 1 cut(s) 1048
BspDI ATCGAT 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 240, 665
BspMI ACCTGC 1 cut(s) 619
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 5 cut(s) 233, 246, 597, 658, 671
BsrDI GCAATG 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 265
BsrI ACTGG 2 cut(s) 290, 824
BssMI GATC 7 cut(s) 96, 222, 238, 344, 589, 663, 943
Bst2UI CCWGG 1 cut(s) 950
Bst4CI ACNGT 6 cut(s) 386, 582, 638, 731, 893, 1238
Bst6I CTCTTC 2 cut(s) 506, 804
BstAPI GCANNNNNTGC 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 265
BstBAI YACGTR 1 cut(s) 758
BstC8I GCNNGC 3 cut(s) 370, 678, 1040
BstDEI CTNAG 4 cut(s) 376, 1011, 1056, 1205
BstF5I GGATG 5 cut(s) 81, 174, 416, 427, 958
BstKTI GATC 7 cut(s) 99, 225, 241, 347, 592, 666, 946
BstMBI GATC 7 cut(s) 96, 222, 238, 344, 589, 663, 943
BstMWI GCNNNNNNNGC 4 cut(s) 69, 167, 1048, 1219
BstNI CCWGG 1 cut(s) 950
BstSCI CCNGG 1 cut(s) 948
BstSFI CTRYAG 2 cut(s) 634, 711
BstV1I GCAGC 2 cut(s) 72, 157
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 2 cut(s) 238, 663
BstYI RGATCY 2 cut(s) 238, 663
Bsu15I ATCGAT 1 cut(s) 343
BsuRI GGCC 3 cut(s) 194, 296, 1142
BsuTUI ATCGAT 1 cut(s) 343
BtsCI GGATG 5 cut(s) 81, 174, 416, 427, 958
BtsIMutI CAGTG 3 cut(s) 297, 817, 889
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 3 cut(s) 370, 678, 1040
CaiI CAGNNNCTG 1 cut(s) 891
ClaI ATCGAT 1 cut(s) 343
Csp6I GTAC 1 cut(s) 266
CspCI CAANNNNNGTGG 2 cut(s) 75, 110
CviAII CATG 4 cut(s) 145, 162, 849, 990
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 4 cut(s) 376, 1011, 1056, 1205
DpnI GATC 7 cut(s) 98, 224, 240, 346, 591, 665, 945
DpnII GATC 7 cut(s) 96, 222, 238, 344, 589, 663, 943
EaeI YGGCCR 2 cut(s) 192, 1140
Eam1104I CTCTTC 2 cut(s) 506, 804
EarI CTCTTC 2 cut(s) 506, 804
Eco32I GATATC 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 481, 828
Eco88I CYCGRG 1 cut(s) 1022
EcoRII CCWGG 1 cut(s) 948
EcoRV GATATC 1 cut(s) 106
FaeI CATG 4 cut(s) 148, 165, 852, 993
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FatI CATG 4 cut(s) 144, 161, 848, 989
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 2 cut(s) 61, 171
FokI GGATG 5 cut(s) 68, 161, 423, 434, 965
Fsp4HI GCNGC 2 cut(s) 61, 171
FspBI CTAG 3 cut(s) 41, 369, 417
GluI GCNGC 2 cut(s) 61, 171
HaeIII GGCC 3 cut(s) 194, 296, 1142
Hin1II CATG 4 cut(s) 148, 165, 852, 993
HincII GTYRAC 3 cut(s) 123, 550, 727
HindII GTYRAC 3 cut(s) 123, 550, 727
HinfI GANTC 8 cut(s) 141, 454, 481, 531, 542, 863, 933, 986
HpaI GTTAAC 1 cut(s) 550
HphI GGTGA 1 cut(s) 773
Hpy166II GTNNAC 4 cut(s) 123, 550, 634, 727
Hpy188I TCNGA 5 cut(s) 79, 277, 600, 622, 1057
Hpy188III TCNNGA 4 cut(s) 220, 408, 475, 508
Hpy8I GTNNAC 4 cut(s) 123, 550, 634, 727
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 4 cut(s) 505, 803, 961, 1205
HpyCH4III ACNGT 6 cut(s) 386, 582, 638, 731, 893, 1238
HpyCH4IV ACGT 4 cut(s) 757, 1129, 1156, 1175
HpyCH4V TGCA 8 cut(s) 4, 60, 113, 202, 402, 628, 860, 904
HpyF10VI GCNNNNNNNGC 4 cut(s) 69, 167, 1048, 1219
HpyF3I CTNAG 4 cut(s) 376, 1011, 1056, 1205
HpySE526I ACGT 4 cut(s) 757, 1129, 1156, 1175
Hsp92II CATG 4 cut(s) 148, 165, 852, 993
KspAI GTTAAC 1 cut(s) 550
Kzo9I GATC 7 cut(s) 96, 222, 238, 344, 589, 663, 943
Lsp1109I GCAGC 2 cut(s) 72, 157
LweI GCATC 5 cut(s) 211, 349, 381, 943, 1038
MaeI CTAG 3 cut(s) 41, 369, 417
MaeII ACGT 4 cut(s) 757, 1129, 1156, 1175
MaeIII GTNAC 3 cut(s) 380, 610, 1238
MalI GATC 7 cut(s) 98, 224, 240, 346, 591, 665, 945
MboI GATC 7 cut(s) 96, 222, 238, 344, 589, 663, 943
MboII GAAGA 6 cut(s) 56, 449, 490, 523, 821, 1193
MfeI CAATTG 1 cut(s) 188
MflI RGATCY 2 cut(s) 238, 663
MlsI TGGCCA 2 cut(s) 194, 1142
MluCI AATT 7 cut(s) 188, 503, 563, 841, 1016, 1179, 1231
MluNI TGGCCA 2 cut(s) 194, 1142
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 482
MnlI CCTC 6 cut(s) 507, 580, 718, 767, 908, 1203
Mox20I TGGCCA 2 cut(s) 194, 1142
MroXI GAANNNNTTC 1 cut(s) 1100
MscI TGGCCA 2 cut(s) 194, 1142
MseI TTAA 4 cut(s) 336, 549, 687, 1178
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 2 cut(s) 194, 1142
MspR9I CCNGG 1 cut(s) 950
MunI CAATTG 1 cut(s) 188
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 950
MwoI GCNNNNNNNGC 4 cut(s) 69, 167, 1048, 1219
NdeII GATC 7 cut(s) 96, 222, 238, 344, 589, 663, 943
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 4 cut(s) 148, 165, 852, 993
NlaIV GGNNCC 2 cut(s) 240, 665
PctI GAATGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 1100
PfeI GAWTC 7 cut(s) 454, 481, 531, 542, 863, 933, 986
PfoI TCCNGGA 1 cut(s) 948
PkrI GCNGC 2 cut(s) 62, 172
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Ppu21I YACGTR 1 cut(s) 758
PsiI TTATAA 2 cut(s) 561, 840
Psp6I CCWGG 1 cut(s) 948
PspGI CCWGG 1 cut(s) 948
PspN4I GGNNCC 2 cut(s) 240, 665
PstNI CAGNNNCTG 1 cut(s) 891
PsuI RGATCY 2 cut(s) 238, 663
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 600
SaqAI TTAA 4 cut(s) 336, 549, 687, 1178
SatI GCNGC 2 cut(s) 61, 171
Sau3AI GATC 7 cut(s) 96, 222, 238, 344, 589, 663, 943
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 950
SfaNI GCATC 5 cut(s) 211, 349, 381, 943, 1038
SfcI CTRYAG 2 cut(s) 634, 711
SmiMI CAYNNNNRTG 1 cut(s) 600
Sse9I AATT 7 cut(s) 188, 503, 563, 841, 1016, 1179, 1231
SspMI CTAG 3 cut(s) 41, 369, 417
StyD4I CCNGG 1 cut(s) 948
TaaI ACNGT 6 cut(s) 386, 582, 638, 731, 893, 1238
TaiI ACGT 4 cut(s) 760, 1132, 1159, 1178
TaqI TCGA 2 cut(s) 343, 931
TasI AATT 7 cut(s) 188, 503, 563, 841, 1016, 1179, 1231
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 7 cut(s) 454, 481, 531, 542, 863, 933, 986
Tru1I TTAA 4 cut(s) 336, 549, 687, 1178
Tru9I TTAA 4 cut(s) 336, 549, 687, 1178
TscAI CASTG 3 cut(s) 297, 824, 896
TseI GCWGC 2 cut(s) 60, 170
TspDTI ATGAA 7 cut(s) 51, 249, 444, 450, 785, 1167, 1187
TspRI CASTG 3 cut(s) 297, 824, 896
XapI RAATTY 2 cut(s) 503, 563
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 1100
XspI CTAG 3 cut(s) 41, 369, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.