pycom10g07370

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000424
Physical Location & Seq
Forward (+)
8695962 .. 8696926
965 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g07370.1

Sequence Viewer

Length: 327 bp
ATGCGCTGCTCATCAATGGGACTCAGTACGACTTCTTCAAGGTCATGGGCAAGGGGCCAAGATTTGTCTTTTGATGACTCAGATGTGTTCGGGGAATGTGTTGAGACTGTGCCACCATTGAAATGCCCTGAACCGTCGATTGAAGTTGACCCTTTCTATCGGCAATTGCCGGATTTCATGTCTGTGAGGTGGTTAAAAGGCCCTGCTGCGTACACCGAGATTGTGGGCCGCTCCGTTCACGGCCTGGTTTGCATTCGCAAAAGAGGCGAAGGGGAGGACGGGGATATTGCTTTCTTGGTATGTGAATGCAGAAGCGAAGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

109

Amino Acids

12.05

Weight (kDa)

4.69

Isoelectric Point (pI)

75.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 231
AciI CCGC 1 cut(s) 229
AfaI GTAC 2 cut(s) 28, 212
AgsI TTSAA 3 cut(s) 39, 121, 143
AjnI CCWGG 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 98
AoxI GGCC 4 cut(s) 55, 199, 226, 241
ApeKI GCWGC 2 cut(s) 6, 206
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 3 cut(s) 55, 200, 226
BarI GAAGNNNNNNTAC 2 cut(s) 19, 51
BbvI GCAGC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 98
BisI GCNGC 3 cut(s) 7, 207, 229
BlsI GCNGC 3 cut(s) 8, 208, 230
Bme1390I CCNGG 1 cut(s) 245
BmgT120I GGNCC 3 cut(s) 55, 200, 226
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 245
BseMII CTCAG 2 cut(s) 37, 93
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 4 cut(s) 57, 201, 228, 243
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 33
BsmI GAATGC 2 cut(s) 252, 311
BsnI GGCC 4 cut(s) 57, 201, 228, 243
BspACI CCGC 1 cut(s) 229
BspANI GGCC 4 cut(s) 57, 201, 228, 243
BspCNI CTCAG 2 cut(s) 36, 92
BspLI GGNNCC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 109, 135
Bst6I CTCTTC 1 cut(s) 312
BstDEI CTNAG 2 cut(s) 23, 79
BstHHI GCGC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 249, 264
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 193
BsuRI GGCC 4 cut(s) 57, 201, 228, 243
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 55, 200, 226
Csp6I GTAC 2 cut(s) 27, 211
CviAII CATG 2 cut(s) 45, 178
CviJI RGCY 4 cut(s) 57, 201, 228, 243
CviKI_1 RGCY 4 cut(s) 57, 201, 228, 243
CviQI GTAC 2 cut(s) 27, 211
DdeI CTNAG 2 cut(s) 23, 79
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 48, 181
FaiI YATR 3 cut(s) 46, 179, 301
FaqI GGGAC 1 cut(s) 33
FatI CATG 2 cut(s) 44, 177
Fnu4HI GCNGC 3 cut(s) 7, 207, 229
Fsp4HI GCNGC 3 cut(s) 7, 207, 229
GlaI GCGC 1 cut(s) 5
GluI GCNGC 3 cut(s) 7, 207, 229
HaeIII GGCC 4 cut(s) 57, 201, 228, 243
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 48, 181
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 21, 77
HpaII CCGG 1 cut(s) 170
Hpy166II GTNNAC 3 cut(s) 148, 213, 238
Hpy188I TCNGA 1 cut(s) 82
Hpy8I GTNNAC 3 cut(s) 148, 213, 238
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 2 cut(s) 109, 135
HpyCH4V TGCA 2 cut(s) 252, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 264
HpyF3I CTNAG 2 cut(s) 23, 79
Hsp92II CATG 2 cut(s) 48, 181
HspAI GCGC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 5 cut(s) 141, 183, 216, 230, 257
Lsp1109I GCAGC 1 cut(s) 193
MbiI CCGCTC 1 cut(s) 231
MboII GAAGA 1 cut(s) 27
MfeI CAATTG 1 cut(s) 164
MluCI AATT 1 cut(s) 164
MlyI GAGTC 2 cut(s) 15, 71
MnlI CCTC 4 cut(s) 180, 257, 268, 313
MseI TTAA 1 cut(s) 194
MslI CAYNNNNRTG 2 cut(s) 121, 182
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 164
Mva1269I GAATGC 2 cut(s) 252, 311
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 249, 264
NlaIII CATG 2 cut(s) 48, 181
NlaIV GGNNCC 1 cut(s) 56
PctI GAATGC 2 cut(s) 252, 311
PkrI GCNGC 3 cut(s) 8, 208, 230
PleI GAGTC 2 cut(s) 15, 71
PpsI GAGTC 2 cut(s) 15, 71
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 3 cut(s) 55, 200, 226
RsaI GTAC 2 cut(s) 28, 212
RsaNI GTAC 2 cut(s) 27, 211
RseI CAYNNNNRTG 2 cut(s) 121, 182
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 3 cut(s) 7, 207, 229
Sau96I GGNCC 3 cut(s) 55, 200, 226
SchI GAGTC 2 cut(s) 15, 71
ScrFI CCNGG 1 cut(s) 245
SetI ASST 2 cut(s) 44, 191
SmiMI CAYNNNNRTG 2 cut(s) 121, 182
Sse9I AATT 1 cut(s) 164
SsiI CCGC 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 109, 135
TaqI TCGA 1 cut(s) 137
TasI AATT 1 cut(s) 164
TauI GCSGC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TseI GCWGC 2 cut(s) 6, 206
TspDTI ATGAA 1 cut(s) 166
TspGWI ACGGA 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.