pycom16g17130

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000424
Physical Location & Seq
Forward (+)
13183363 .. 13183719
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g17130.1

Sequence Viewer

Length: 357 bp
ATGTCAGACCTCCCGGAGATACTGTTCAACATCCTTTCACGGCTTCCACCCAAGGACTTGATTCGGTTCCTCTGCATTTTTAAAGTTTGGTATGCCACCATCAACGACCATCGCTTCATCAAAGCTCATCTTCAACGCTCCATCCAAACCAATTCCGGTCGCACCATTTTACTCAAGTCACGCAACGCTCATCCGTCAGATTTCTTTTCATCGCCTTTTGATGACAGTGAAACGTTCGGGACAGCGGTCAAAATTGAGCAGCCCTTGCAATGCCCTGACGAGTCCACTACAATATTGGGCTGCTCAATGAATGGTGTTGTTTACATTTGCAACTACGAGACAATGTTTATAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

119

Amino Acids

13.49

Weight (kDa)

6.26

Isoelectric Point (pI)

59.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 40 4.1e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 245
AclI AACGTT 1 cut(s) 233
AgsI TTSAA 2 cut(s) 28, 134
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 259, 300
AsuC2I CCSGG 1 cut(s) 14
BbvI GCAGC 2 cut(s) 271, 287
BccI CCATC 3 cut(s) 107, 117, 149
BceAI ACGGC 1 cut(s) 56
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 332
BisI GCNGC 2 cut(s) 260, 301
BlsI GCNGC 2 cut(s) 261, 302
Bme1390I CCNGG 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 14
BoxI GACNNNNGTC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bse3DI GCAATG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 3 cut(s) 30, 141, 190
BseMI GCAATG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 271, 287
Bsh1285I CGRYCG 1 cut(s) 160
BsiEI CGRYCG 1 cut(s) 160
BsiSI CCGG 2 cut(s) 14, 156
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 253
BspACI CCGC 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 2 cut(s) 24, 227
BstAPI GCANNNNNTGC 1 cut(s) 265
BstF5I GGATG 3 cut(s) 30, 141, 190
BstMAI GTCTC 1 cut(s) 332
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstPAI GACNNNNGTC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 271, 287
BtgZI GCGATG 2 cut(s) 95, 195
BtsCI GGATG 3 cut(s) 30, 141, 190
BtsIMutI CAGTG 1 cut(s) 232
CviJI RGCY 5 cut(s) 43, 125, 262, 300, 353
CviKI_1 RGCY 5 cut(s) 43, 125, 262, 300, 353
DraI TTTAAA 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaiI YATR 2 cut(s) 93, 350
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 260, 301
FokI GGATG 3 cut(s) 17, 128, 177
Fsp4HI GCNGC 2 cut(s) 260, 301
GluI GCNGC 2 cut(s) 260, 301
HapII CCGG 2 cut(s) 14, 156
HinfI GANTC 2 cut(s) 61, 281
HpaII CCGG 2 cut(s) 14, 156
Hpy166II GTNNAC 2 cut(s) 285, 322
Hpy188I TCNGA 2 cut(s) 7, 199
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 2 cut(s) 285, 322
HpyCH4III ACNGT 2 cut(s) 24, 227
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 3 cut(s) 75, 268, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpySE526I ACGT 1 cut(s) 233
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 3 cut(s) 27, 169, 288
Lsp1109I GCAGC 2 cut(s) 271, 287
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 177
MboII GAAGA 1 cut(s) 122
MluCI AATT 2 cut(s) 151, 252
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 2 cut(s) 20, 80
MseI TTAA 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 2 cut(s) 14, 156
MspR9I CCNGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 265
NciI CCSGG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 12
PkrI GCNGC 2 cut(s) 261, 302
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PshAI GACNNNNGTC 1 cut(s) 245
Psp1406I AACGTT 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 260, 301
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 14
SetI ASST 3 cut(s) 12, 127, 236
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 2 cut(s) 151, 252
SsiI CCGC 1 cut(s) 245
SspI AATATT 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 24, 227
TaiI ACGT 1 cut(s) 236
TasI AATT 2 cut(s) 151, 252
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 177
TseI GCWGC 2 cut(s) 259, 300
Tsp45I GTSAC 1 cut(s) 177
TspDTI ATGAA 3 cut(s) 106, 198, 323
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.