MD02G1290700.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000424
Physical Location & Seq
Reverse (-)
34639604 .. 34640731
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1290700.v1.1.491

Sequence Viewer

Length: 1128 bp
ATGGCGGAGTTCCCACCGGAGCTGATCTTTGAAATCCTTTTACGGCTCCCGCCCGAGGGCTTGTTACGATGCTTATGTGTTTCCAAATCTTGGAATGCTACCATCCATGACAAAAACTTTATCAAATCCCATCTCCAGCGCTCCATCCAAACCAATTCTTTTGGCTCTCTTTATGTATATGCAGGTTTTTACCACGACGGGAGGAAGTTGAAGTTCTCTACTATTTACAACGACGGTACTATAGAACAAGCCACGGGAATCGGACAGTCGCCTCTGCAAGACGTAGAAGGCCGGATCCCTTTTCCTTACACGTTGGTCTCATGCAATGGGATAATTTGCATTCGCACCGAGACGGTCGACAAGGTCGAGGAATTTGTTTTGTGGAATCCGTCAATTCAAAAGTTCAAAAATATACCCTCCCCAACGTTTGAGCAGCCTCCATCGTCAGACATATATTTGCACCGTCGCTATGGATTCGGGTATGATTCAGCAAACGACGACTATAAACTTTTGGGAATTGCAATGTTTTTTGTTAATTGGGACTTGAATATTTCTGTGCACCAATATCAAATTTATAGCCTAAAATCCAACTCATGGAGAAAGATAAAAAACATGCCGCGTGATGAGTTTCAATTCAGTGCGAGTGAGATCGTGTTTTTGAACGGTTGTCTAAGTTGGCAGGCATATAACGTATTAGATAAAAAATTCTATGTTGTCACCTTTGAGCTTGCCAGTGAGAAATATCACTGGTTTCCCAACCCGGTTAATGGGATTGTGTATTTAGAGGTCTTGGGAGACTCTCTATGTATTTTTCGTTTGCGAACCACCATAGATGCTTGGATTATGAAGGAACATGGATCTTGGACCCTGCTTTATTCTATAGAGCAGGCCGCTATGCGTTGGGTTAGTCGGTGGAAACCCGTGCTGCTCTCAAAGAATGGTGAAAGTGTTCTTCTGATGAATGGCTTAGAAAAGTTTGCTTGGTTTGATTTCGTGAAAAATAGTTGGAAAGAAGTTGGAACTGCAGGTCCATACATTCATACCATAGATACCATTTGCATGAGGAGCCTATGTCTTCTTGATGGCGACCCAATTATTGTTGAGAGCAGCAAGTCCCTCTCCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

376

Amino Acids

43.3

Weight (kDa)

6.46

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 41 1.4e-08 F-box domain
F-box-like PF12937 5 - 38 4.4e-07 F-box-like
FBA_3 PF08268 100 - 257 9.3e-17 F-box associated beta propeller domain
FBA_1 PF07734 104 - 293 9.4e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 173, 1016
AccB7I CCANNNNNTGG 2 cut(s) 90, 594
AccI GTMKAC 1 cut(s) 357
AccII CGCG 1 cut(s) 619
AciI CCGC 4 cut(s) 5, 50, 617, 891
AclI AACGTT 1 cut(s) 425
AclWI GGATC 3 cut(s) 289, 302, 865
AcsI RAATTY 3 cut(s) 371, 570, 704
AfaI GTAC 1 cut(s) 238
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 5 cut(s) 55, 56, 90, 594, 767
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 7 cut(s) 32, 211, 398, 406, 547, 632, 661
AloI GAACNNNNNNTCC 2 cut(s) 1012, 1044
AluBI AGCT 2 cut(s) 22, 727
AluI AGCT 2 cut(s) 22, 727
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 3 cut(s) 322, 344, 789
Alw44I GTGCAC 1 cut(s) 557
AlwI GGATC 3 cut(s) 289, 302, 865
Ama87I CYCGRG 1 cut(s) 53
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 2 cut(s) 289, 888
ApaLI GTGCAC 1 cut(s) 557
ApeKI GCWGC 3 cut(s) 433, 925, 1107
ApoI RAATTY 3 cut(s) 371, 570, 704
Asp700I GAANNNNTTC 1 cut(s) 948
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 864, 1028
AsuC2I CCSGG 1 cut(s) 761
AsuHPI GGTGA 2 cut(s) 709, 953
AvaI CYCGRG 1 cut(s) 53
AvaII GGWCC 2 cut(s) 864, 1028
BaeGI GKGCMC 1 cut(s) 561
BamHI GGATCC 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 1067
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 3 cut(s) 445, 912, 1119
BccI CCATC 5 cut(s) 110, 138, 152, 448, 1076
BceAI ACGGC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 761
BcoDI GTCTC 3 cut(s) 322, 344, 789
BfmI CTRYAG 3 cut(s) 240, 879, 1023
BfoI RGCGCY 1 cut(s) 142
BfuAI ACCTGC 2 cut(s) 173, 1016
BisI GCNGC 5 cut(s) 434, 617, 891, 926, 1108
BlsI GCNGC 5 cut(s) 435, 618, 892, 927, 1109
Bme1390I CCNGG 1 cut(s) 761
Bme18I GGWCC 2 cut(s) 864, 1028
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 2 cut(s) 864, 1028
BmiI GGNNCC 4 cut(s) 47, 296, 866, 1067
BmrFI CCNGG 1 cut(s) 761
BmsI GCATC 2 cut(s) 59, 823
BpiI GAAGAC 1 cut(s) 1067
BpmI CTGGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 761
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 2 cut(s) 54, 252
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 1057, 1087
Bsc4I CCNNNNNNNGG 5 cut(s) 55, 56, 90, 594, 767
Bse1I ACTGG 2 cut(s) 732, 752
Bse3DI GCAATG 2 cut(s) 331, 528
BseDI CCNNGG 2 cut(s) 54, 252
BseGI GGATG 2 cut(s) 102, 144
BseLI CCNNNNNNNGG 5 cut(s) 55, 56, 90, 594, 767
BseMI GCAATG 2 cut(s) 331, 528
BseNI ACTGG 2 cut(s) 732, 752
BseRI GAGGAG 1 cut(s) 1078
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 3 cut(s) 445, 912, 1119
Bsh1236I CGCG 1 cut(s) 619
Bsh1285I CGRYCG 1 cut(s) 357
BshFI GGCC 2 cut(s) 291, 890
BsiEI CGRYCG 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 3 cut(s) 17, 292, 761
BslFI GGGAC 2 cut(s) 554, 1099
BslI CCNNNNNNNGG 5 cut(s) 55, 56, 90, 594, 767
BsmAI GTCTC 3 cut(s) 322, 344, 789
BsmBI CGTCTC 1 cut(s) 344
BsmFI GGGAC 2 cut(s) 554, 1099
BsmI GAATGC 2 cut(s) 100, 339
BsnI GGCC 2 cut(s) 291, 890
Bso31I GGTCTC 1 cut(s) 322
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 561
Bsp143I GATC 4 cut(s) 24, 294, 648, 857
BspACI CCGC 4 cut(s) 5, 50, 617, 891
BspANI GGCC 2 cut(s) 291, 890
BspFNI CGCG 1 cut(s) 619
BspLI GGNNCC 4 cut(s) 47, 296, 866, 1067
BspMAI CTGCAG 1 cut(s) 1027
BspMI ACCTGC 2 cut(s) 173, 1016
BspPI GGATC 3 cut(s) 289, 302, 865
BspTNI GGTCTC 1 cut(s) 322
BsrDI GCAATG 2 cut(s) 331, 528
BsrI ACTGG 2 cut(s) 732, 752
BssECI CCNNGG 2 cut(s) 54, 252
BssMI GATC 4 cut(s) 24, 294, 648, 857
Bst4CI ACNGT 5 cut(s) 236, 267, 355, 464, 665
BstC8I GCNNGC 3 cut(s) 681, 729, 888
BstDEI CTNAG 2 cut(s) 671, 967
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 102, 144
BstFNI CGCG 1 cut(s) 619
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 4 cut(s) 27, 297, 651, 860
BstMAI GTCTC 3 cut(s) 322, 344, 789
BstMBI GATC 4 cut(s) 24, 294, 648, 857
BstMCI CGRYCG 1 cut(s) 357
BstMWI GCNNNNNNNGC 1 cut(s) 1065
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 759
BstSFI CTRYAG 3 cut(s) 240, 879, 1023
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 1 cut(s) 619
BstV1I GCAGC 3 cut(s) 445, 912, 1119
BstV2I GAAGAC 1 cut(s) 1067
BstX2I RGATCY 2 cut(s) 294, 857
BstYI RGATCY 2 cut(s) 294, 857
BsuRI GGCC 2 cut(s) 291, 890
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 102, 144
BtsIMutI CAGTG 3 cut(s) 643, 739, 745
BveI ACCTGC 2 cut(s) 173, 1016
Cac8I GCNNGC 3 cut(s) 681, 729, 888
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 2 cut(s) 864, 1028
Csp6I GTAC 1 cut(s) 237
CviAII CATG 6 cut(s) 107, 321, 594, 613, 854, 1060
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 2 cut(s) 671, 967
DpnI GATC 4 cut(s) 26, 296, 650, 859
DpnII GATC 4 cut(s) 24, 294, 648, 857
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 322
Eco47I GGWCC 2 cut(s) 864, 1028
Eco47III AGCGCT 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 53
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 6 cut(s) 110, 324, 597, 616, 857, 1063
FaqI GGGAC 2 cut(s) 554, 1099
FatI CATG 6 cut(s) 106, 320, 593, 612, 853, 1059
FauI CCCGC 1 cut(s) 57
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 5 cut(s) 434, 617, 891, 926, 1108
FokI GGATG 2 cut(s) 89, 131
Fsp4HI GCNGC 5 cut(s) 434, 617, 891, 926, 1108
GlaI GCGC 1 cut(s) 140
GluI GCNGC 5 cut(s) 434, 617, 891, 926, 1108
GsuI CTGGAG 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 2 cut(s) 291, 890
HapII CCGG 3 cut(s) 17, 292, 761
HhaI GCGC 1 cut(s) 141
Hin1II CATG 6 cut(s) 110, 324, 597, 616, 857, 1063
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 5 cut(s) 258, 385, 474, 485, 797
HpaII CCGG 3 cut(s) 17, 292, 761
HphI GGTGA 2 cut(s) 709, 953
Hpy166II GTNNAC 2 cut(s) 358, 559
Hpy188I TCNGA 3 cut(s) 263, 448, 957
Hpy188III TCNNGA 2 cut(s) 994, 1079
Hpy8I GTNNAC 2 cut(s) 358, 559
Hpy99I CGWCG 4 cut(s) 200, 236, 468, 500
HpyAV CCTTC 2 cut(s) 281, 841
HpyCH4III ACNGT 5 cut(s) 236, 267, 355, 464, 665
HpyCH4IV ACGT 4 cut(s) 282, 311, 425, 690
HpyCH4V TGCA 9 cut(s) 182, 277, 324, 339, 460, 521, 559, 1025, 1059
HpyF10VI GCNNNNNNNGC 1 cut(s) 1065
HpyF3I CTNAG 2 cut(s) 671, 967
HpySE526I ACGT 4 cut(s) 282, 311, 425, 690
Hsp92II CATG 6 cut(s) 110, 324, 597, 616, 857, 1063
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 4 cut(s) 24, 294, 648, 857
LmnI GCTCC 4 cut(s) 19, 51, 146, 1065
Lsp1109I GCAGC 3 cut(s) 445, 912, 1119
LweI GCATC 2 cut(s) 59, 823
MaeII ACGT 4 cut(s) 282, 311, 425, 690
MaeIII GTNAC 2 cut(s) 63, 715
MalI GATC 4 cut(s) 26, 296, 650, 859
MboI GATC 4 cut(s) 24, 294, 648, 857
MboII GAAGA 2 cut(s) 944, 1067
MflI RGATCY 2 cut(s) 294, 857
MhlI GDGCHC 1 cut(s) 561
MlyI GAGTC 1 cut(s) 791
MmeI TCCRAC 3 cut(s) 612, 986, 997
MnlI CCTC 9 cut(s) 49, 195, 282, 361, 427, 447, 778, 1056, 1127
MroXI GAANNNNTTC 1 cut(s) 948
MseI TTAA 2 cut(s) 534, 765
MslI CAYNNNNRTG 1 cut(s) 1058
MspI CCGG 3 cut(s) 17, 292, 761
MspR9I CCNGG 1 cut(s) 761
Mva1269I GAATGC 2 cut(s) 100, 339
MvnI CGCG 1 cut(s) 619
MwoI GCNNNNNNNGC 1 cut(s) 1065
NciI CCSGG 1 cut(s) 761
NdeII GATC 4 cut(s) 24, 294, 648, 857
NlaIII CATG 6 cut(s) 110, 324, 597, 616, 857, 1063
NlaIV GGNNCC 4 cut(s) 47, 296, 866, 1067
NmuCI GTSAC 1 cut(s) 715
NspI RCATGY 1 cut(s) 616
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PctI GAATGC 2 cut(s) 100, 339
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 4 cut(s) 258, 385, 474, 485
PflFI GACNNNGTC 1 cut(s) 362
PflMI CCANNNNNTGG 2 cut(s) 90, 594
PkrI GCNGC 5 cut(s) 435, 618, 892, 927, 1109
PleI GAGTC 1 cut(s) 791
PpsI GAGTC 1 cut(s) 791
Psp1406I AACGTT 1 cut(s) 425
PspN4I GGNNCC 4 cut(s) 47, 296, 866, 1067
PspPI GGNCC 2 cut(s) 864, 1028
PstI CTGCAG 1 cut(s) 1027
PsuI RGATCY 2 cut(s) 294, 857
PsyI GACNNNGTC 1 cut(s) 362
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 1058
SalI GTCGAC 1 cut(s) 356
SaqAI TTAA 2 cut(s) 534, 765
SatI GCNGC 5 cut(s) 434, 617, 891, 926, 1108
Sau3AI GATC 4 cut(s) 24, 294, 648, 857
Sau96I GGNCC 2 cut(s) 864, 1028
SchI GAGTC 1 cut(s) 791
ScrFI CCNGG 1 cut(s) 761
SduI GDGCHC 1 cut(s) 561
SfaNI GCATC 2 cut(s) 59, 823
SfcI CTRYAG 3 cut(s) 240, 879, 1023
SinI GGWCC 2 cut(s) 864, 1028
SmiMI CAYNNNNRTG 1 cut(s) 1058
SsiI CCGC 4 cut(s) 5, 50, 617, 891
SspI AATATT 1 cut(s) 550
StyD4I CCNGG 1 cut(s) 759
TaaI ACNGT 5 cut(s) 236, 267, 355, 464, 665
TaiI ACGT 4 cut(s) 285, 314, 428, 693
TaqI TCGA 2 cut(s) 357, 366
TauI GCSGC 2 cut(s) 619, 893
TfiI GAWTC 4 cut(s) 258, 385, 474, 485
Tru1I TTAA 2 cut(s) 534, 765
Tru9I TTAA 2 cut(s) 534, 765
TscAI CASTG 3 cut(s) 643, 739, 752
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 3 cut(s) 433, 925, 1107
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 3 cut(s) 860, 974, 1028
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 3 cut(s) 643, 739, 752
Tth111I GACNNNGTC 1 cut(s) 362
Van91I CCANNNNNTGG 2 cut(s) 90, 594
VneI GTGCAC 1 cut(s) 557
VpaK11BI GGWCC 2 cut(s) 864, 1028
XapI RAATTY 3 cut(s) 371, 570, 704
XceI RCATGY 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 357
XmnI GAANNNNTTC 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.