RLG00000021887

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000424
Physical Location & Seq
Forward (+)
79055851 .. 79057020
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021887

Sequence Viewer

Length: 1170 bp
ATGGCCAACCTTTCAACAAAATCATATTTACCGCCGGAAATGATCTTTAACATCCTTTTACGGCTCCCAACCAAGGATCTGATACGGTTCATGTGTGTTTGTAGAGCTTGGAATGCTACTATCCACGACGAAAAGTTCATCAAAGCTCATCATGACCTCATGACAACCAACAGTTCTCGCACCCTTGTACTTATACCATACGGTCCACTGCCCGGAGAACCCTCTGTATCGATTTCTTTCGACGGAGATGTATTTGGTAATGCCGTGAGAATTCAGCGGCCATTGGAACAAAATACCAGGATAGTGAGTTACTGTAACGGTTTGGTTTGCATTAATATCTATGATGCAGTATCTAAACAAGAGTATTTTGCAGTATGGAATCCGTCGATTCAAAGGTTGAAGAGAATTCCCTTAACAGCCATCGAGCTGCCAGCAGGGCCGACAGCGAGATATCCGAAGTGGATGTATGGGTTTGGGTACGATTCAACCAATGATGACCATAAATTTGTGAAAGCGGTGGTATCTGTTAATAGGAATCATGAACTGGATTCGAAAGTGAAAATTTATAGCTTAAAATCCAACTCATGGAAAAAGATCCAAAACATGCCTTGCATTGGGCGTTTTGGACTAGCTGCACCATATCTATCCTTTCTGAATGGTGCTCTACATTGGCTGGTGCATTGTAACTTAATTGTAACTCTTGATCTCGCAACTGAGAAGTATGACCATTTTCCCACCCCAGTGGTTGTTGATCTCATTGTTGATCCCTTTCGATGGACTTTGGAGGTCTTGGGAGGATATCTGTGTGTGTATTCTAAAGACACAGGCTCATATTTGAATGATGTTTGGATTATGAAAGAATATGGAGTGACAGCACCTTGGACTCGGTTATATACTATAGATGCGAGGGATATGCCTCGGTGGCCTTTTCAGTATCCCCACGGACCCCACCCCTATTATAAACCCTTGGTGTTTTTAAAGACCGGCAAGATGGTTCTATTAGTATCAGACGACAACATGCTTTGCTGGTATGACTTGGAGAAAAAGAGTGCGAAAGAAGTTGAGATTCTTGGTACGCCCTTTAAATTTACAGCAGCTATTTGTGTGGGAAACCTTCATCTCCTTAATAATGATCCTGTGGGATCACTAGGTTTTCTATTATGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

390

Amino Acids

44.45

Weight (kDa)

8.57

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 9 - 44 3.7e-09 F-box-like
F-box PF00646 10 - 47 1e-10 F-box domain
FBA_1 PF07734 96 - 355 1.5e-20 F-box associated beta propeller domain
FBA_3 PF08268 97 - 362 9.8e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 960
AccB7I CCANNNNNTGG 1 cut(s) 585
AciI CCGC 3 cut(s) 32, 277, 515
AclWI GGATC 5 cut(s) 84, 589, 758, 1127, 1150
AcoI YGGCCR 2 cut(s) 3, 278
AcsI RAATTY 5 cut(s) 270, 405, 503, 561, 1085
AfaI GTAC 3 cut(s) 189, 479, 1075
AfiI CCNNNNNNNGG 5 cut(s) 73, 212, 585, 614, 774
AgsI TTSAA 5 cut(s) 15, 392, 400, 486, 838
AjnI CCWGG 1 cut(s) 296
AleI CACNNNNGTG 1 cut(s) 740
AluBI AGCT 6 cut(s) 107, 146, 427, 570, 632, 1097
AluI AGCT 6 cut(s) 107, 146, 427, 570, 632, 1097
Alw21I GWGCWC 1 cut(s) 664
AlwI GGATC 5 cut(s) 84, 589, 758, 1127, 1150
AoxI GGCC 4 cut(s) 3, 278, 437, 923
ApeKI GCWGC 3 cut(s) 427, 632, 1094
ApoI RAATTY 5 cut(s) 270, 405, 503, 561, 1085
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
AseI ATTAAT 1 cut(s) 333
AspS9I GGNCC 3 cut(s) 203, 437, 944
AsuC2I CCSGG 1 cut(s) 213
AsuII TTCGAA 1 cut(s) 551
AvaII GGWCC 2 cut(s) 203, 944
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 664
BbvI GCAGC 3 cut(s) 414, 619, 1106
BccI CCATC 3 cut(s) 428, 768, 985
BceAI ACGGC 2 cut(s) 77, 248
BcgI CGANNNNNNTGC 2 cut(s) 895, 929
BciT130I CCWGG 1 cut(s) 298
BciVI GTATCC 1 cut(s) 945
BcnI CCSGG 1 cut(s) 213
BfaI CTAG 2 cut(s) 629, 1148
BfmI CTRYAG 1 cut(s) 897
BfuI GTATCC 1 cut(s) 945
BglI GCCNNNNNGGC 2 cut(s) 436, 922
BisI GCNGC 4 cut(s) 278, 428, 633, 1095
BlsI GCNGC 4 cut(s) 279, 429, 634, 1096
Bme1390I CCNGG 2 cut(s) 213, 298
Bme18I GGWCC 2 cut(s) 203, 944
BmgT120I GGNCC 3 cut(s) 203, 437, 944
BmiI GGNNCC 2 cut(s) 65, 946
BmrFI CCNGG 2 cut(s) 213, 298
BmrI ACTGGG 1 cut(s) 734
BmsI GCATC 2 cut(s) 334, 892
BmuI ACTGGG 1 cut(s) 734
Bpu14I TTCGAA 1 cut(s) 551
BpuMI CCSGG 1 cut(s) 213
Bsa29I ATCGAT 1 cut(s) 230
BsaJI CCNNGG 5 cut(s) 72, 878, 917, 940, 966
Bsc4I CCNNNNNNNGG 5 cut(s) 73, 212, 585, 614, 774
Bse118I RCCGGY 1 cut(s) 983
Bse1I ACTGG 2 cut(s) 549, 740
BseBI CCWGG 1 cut(s) 298
BseCI ATCGAT 1 cut(s) 230
BseDI CCNNGG 5 cut(s) 72, 878, 917, 940, 966
BseGI GGATG 2 cut(s) 51, 468
BseLI CCNNNNNNNGG 5 cut(s) 73, 212, 585, 614, 774
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 2 cut(s) 549, 740
BseXI GCAGC 3 cut(s) 414, 619, 1106
BsgI GTGCAG 1 cut(s) 618
BshFI GGCC 4 cut(s) 5, 280, 439, 925
BshVI ATCGAT 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 664
BsiSI CCGG 3 cut(s) 35, 213, 984
BslI CCNNNNNNNGG 5 cut(s) 73, 212, 585, 614, 774
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 4 cut(s) 5, 280, 439, 925
Bsp119I TTCGAA 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 664
Bsp143I GATC 8 cut(s) 42, 76, 594, 703, 751, 763, 1132, 1142
BspACI CCGC 3 cut(s) 32, 277, 515
BspANI GGCC 4 cut(s) 5, 280, 439, 925
BspCNI CTCAG 1 cut(s) 706
BspDI ATCGAT 1 cut(s) 230
BspHI TCATGA 3 cut(s) 151, 159, 538
BspLI GGNNCC 2 cut(s) 65, 946
BspPI GGATC 5 cut(s) 84, 589, 758, 1127, 1150
BspT104I TTCGAA 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 983
BsrI ACTGG 2 cut(s) 549, 740
BssAI RCCGGY 1 cut(s) 983
BssECI CCNNGG 5 cut(s) 72, 878, 917, 940, 966
BssMI GATC 8 cut(s) 42, 76, 594, 703, 751, 763, 1132, 1142
BssT1I CCWWGG 3 cut(s) 72, 878, 966
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 5 cut(s) 87, 173, 203, 314, 320
Bst6I CTCTTC 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 714
BstDSI CCRYGG 1 cut(s) 940
BstF5I GGATG 2 cut(s) 51, 468
BstKTI GATC 8 cut(s) 45, 79, 597, 706, 754, 766, 1135, 1145
BstMBI GATC 8 cut(s) 42, 76, 594, 703, 751, 763, 1132, 1142
BstMWI GCNNNNNNNGC 3 cut(s) 113, 436, 922
BstNI CCWGG 1 cut(s) 298
BstNSI RCATGY 2 cut(s) 607, 1021
BstSCI CCNGG 2 cut(s) 211, 296
BstSFI CTRYAG 1 cut(s) 897
BstV1I GCAGC 3 cut(s) 414, 619, 1106
BstX2I RGATCY 2 cut(s) 76, 594
BstXI CCANNNNNNTGG 1 cut(s) 742
BstYI RGATCY 2 cut(s) 76, 594
Bsu15I ATCGAT 1 cut(s) 230
BsuI GTATCC 1 cut(s) 945
BsuRI GGCC 4 cut(s) 5, 280, 439, 925
BsuTUI ATCGAT 1 cut(s) 230
BtgI CCRYGG 1 cut(s) 940
BtsCI GGATG 2 cut(s) 51, 468
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 206, 747
Cac8I GCNNGC 1 cut(s) 432
CciI TCATGA 3 cut(s) 151, 159, 538
Cfr10I RCCGGY 1 cut(s) 983
Cfr13I GGNCC 3 cut(s) 203, 437, 944
ClaI ATCGAT 1 cut(s) 230
Csp6I GTAC 3 cut(s) 188, 478, 1074
CviAII CATG 7 cut(s) 91, 152, 160, 539, 585, 604, 1018
CviQI GTAC 3 cut(s) 188, 478, 1074
DdeI CTNAG 1 cut(s) 714
DpnI GATC 8 cut(s) 44, 78, 596, 705, 753, 765, 1134, 1144
DpnII GATC 8 cut(s) 42, 76, 594, 703, 751, 763, 1132, 1142
DraI TTTAAA 2 cut(s) 978, 1084
EaeI YGGCCR 2 cut(s) 3, 278
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Eco130I CCWWGG 3 cut(s) 72, 878, 966
Eco32I GATATC 2 cut(s) 452, 800
Eco47I GGWCC 2 cut(s) 203, 944
EcoRI GAATTC 2 cut(s) 270, 405
EcoRII CCWGG 1 cut(s) 296
EcoRV GATATC 2 cut(s) 452, 800
EcoT14I CCWWGG 3 cut(s) 72, 878, 966
ErhI CCWWGG 3 cut(s) 72, 878, 966
FaeI CATG 7 cut(s) 94, 155, 163, 542, 588, 607, 1021
FatI CATG 7 cut(s) 90, 151, 159, 538, 584, 603, 1017
Fnu4HI GCNGC 4 cut(s) 278, 428, 633, 1095
FokI GGATG 2 cut(s) 38, 475
Fsp4HI GCNGC 4 cut(s) 278, 428, 633, 1095
FspBI CTAG 2 cut(s) 629, 1148
GluI GCNGC 4 cut(s) 278, 428, 633, 1095
HaeIII GGCC 4 cut(s) 5, 280, 439, 925
HapII CCGG 3 cut(s) 35, 213, 984
Hin1II CATG 7 cut(s) 94, 155, 163, 542, 588, 607, 1021
HinfI GANTC 7 cut(s) 379, 388, 482, 535, 548, 883, 1066
HpaII CCGG 3 cut(s) 35, 213, 984
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 4 cut(s) 81, 456, 654, 1009
Hpy188III TCNNGA 4 cut(s) 152, 160, 539, 701
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 3 cut(s) 131, 245, 388
HpyAV CCTTC 1 cut(s) 1124
HpyCH4III ACNGT 5 cut(s) 87, 173, 203, 314, 320
HpyCH4V TGCA 6 cut(s) 330, 347, 371, 612, 635, 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 436, 922
HpyF3I CTNAG 1 cut(s) 714
Hsp92II CATG 7 cut(s) 94, 155, 163, 542, 588, 607, 1021
Kzo9I GATC 8 cut(s) 42, 76, 594, 703, 751, 763, 1132, 1142
LmnI GCTCC 1 cut(s) 69
Lsp1109I GCAGC 3 cut(s) 414, 619, 1106
LweI GCATC 2 cut(s) 334, 892
MaeI CTAG 2 cut(s) 629, 1148
MaeIII GTNAC 5 cut(s) 308, 314, 683, 694, 868
MalI GATC 8 cut(s) 44, 78, 596, 705, 753, 765, 1134, 1144
MboI GATC 8 cut(s) 42, 76, 594, 703, 751, 763, 1132, 1142
MboII GAAGA 1 cut(s) 412
MflI RGATCY 2 cut(s) 76, 594
MhlI GDGCHC 1 cut(s) 664
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 270, 405, 503, 561, 690, 1085
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 877
MmeI TCCRAC 1 cut(s) 603
MnlI CCTC 6 cut(s) 167, 232, 778, 788, 900, 927
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 9 cut(s) 48, 333, 413, 528, 572, 689, 977, 1083, 1125
MslI CAYNNNNRTG 1 cut(s) 740
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 3 cut(s) 35, 213, 984
MspR9I CCNGG 2 cut(s) 213, 298
Mva1269I GAATGC 1 cut(s) 118
MvaI CCWGG 1 cut(s) 298
MwoI GCNNNNNNNGC 3 cut(s) 113, 436, 922
NciI CCSGG 1 cut(s) 213
NdeII GATC 8 cut(s) 42, 76, 594, 703, 751, 763, 1132, 1142
NlaIII CATG 7 cut(s) 94, 155, 163, 542, 588, 607, 1021
NlaIV GGNNCC 2 cut(s) 65, 946
NmuCI GTSAC 1 cut(s) 868
NspI RCATGY 2 cut(s) 607, 1021
NspV TTCGAA 1 cut(s) 551
OliI CACNNNNGTG 1 cut(s) 740
PagI TCATGA 3 cut(s) 151, 159, 538
PctI GAATGC 1 cut(s) 118
PfeI GAWTC 6 cut(s) 379, 388, 482, 535, 548, 1066
PflMI CCANNNNNTGG 1 cut(s) 585
PkrI GCNGC 4 cut(s) 279, 429, 634, 1096
PleI GAGTC 1 cut(s) 877
PpsI GAGTC 1 cut(s) 877
PshBI ATTAAT 1 cut(s) 333
PsiI TTATAA 1 cut(s) 960
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 65, 946
PspPI GGNCC 3 cut(s) 203, 437, 944
PsuI RGATCY 2 cut(s) 76, 594
RsaI GTAC 3 cut(s) 189, 479, 1075
RsaNI GTAC 3 cut(s) 188, 478, 1074
RseI CAYNNNNRTG 1 cut(s) 740
SaqAI TTAA 9 cut(s) 48, 333, 413, 528, 572, 689, 977, 1083, 1125
SatI GCNGC 4 cut(s) 278, 428, 633, 1095
Sau3AI GATC 8 cut(s) 42, 76, 594, 703, 751, 763, 1132, 1142
Sau96I GGNCC 3 cut(s) 203, 437, 944
SchI GAGTC 1 cut(s) 877
ScrFI CCNGG 2 cut(s) 213, 298
SduI GDGCHC 1 cut(s) 664
SfaNI GCATC 2 cut(s) 334, 892
SfcI CTRYAG 1 cut(s) 897
SfuI TTCGAA 1 cut(s) 551
SinI GGWCC 2 cut(s) 203, 944
SmiMI CAYNNNNRTG 1 cut(s) 740
Sse9I AATT 6 cut(s) 270, 405, 503, 561, 690, 1085
SsiI CCGC 3 cut(s) 32, 277, 515
SspMI CTAG 2 cut(s) 629, 1148
StyD4I CCNGG 2 cut(s) 211, 296
StyI CCWWGG 3 cut(s) 72, 878, 966
TaaI ACNGT 5 cut(s) 87, 173, 203, 314, 320
TaqI TCGA 6 cut(s) 230, 240, 386, 423, 551, 772
TasI AATT 6 cut(s) 270, 405, 503, 561, 690, 1085
TatI WGTACW 1 cut(s) 187
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 6 cut(s) 379, 388, 482, 535, 548, 1066
Tru1I TTAA 9 cut(s) 48, 333, 413, 528, 572, 689, 977, 1083, 1125
Tru9I TTAA 9 cut(s) 48, 333, 413, 528, 572, 689, 977, 1083, 1125
TscAI CASTG 2 cut(s) 213, 747
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 3 cut(s) 427, 632, 1094
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 5 cut(s) 79, 127, 555, 869, 1106
TspGWI ACGGA 3 cut(s) 258, 372, 957
TspRI CASTG 2 cut(s) 213, 747
Van91I CCANNNNNTGG 1 cut(s) 585
VpaK11BI GGWCC 2 cut(s) 203, 944
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 5 cut(s) 270, 405, 503, 561, 1085
XceI RCATGY 2 cut(s) 607, 1021
XspI CTAG 2 cut(s) 629, 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.