FvH4_6g49561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000424
Physical Location & Seq
Forward (+)
37121291 .. 37121809
519 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49561.t1

Sequence Viewer

Length: 252 bp
ATGAAGGAGTATGGGGTGGCAGAGTCTTGGACACAGTTATGTACTATAGATACAAGTGAATTGCCTTGGAGGAGGCCCGTGCCTCAGCAGTATGCTTTTCAATTTTGGGAACCCTTTGTGCTCTCAAAGACCGGCAAGCAGTCCCAAATAGTAAAAGCAGCAACGCCGCTCTACAAGGCAATGGAATATGACGTCGCCCTTCTCGGAGATGCTAGTAAACTCTCCGTCAACGAAATCGGGTTTTATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.51

Weight (kDa)

5.25

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AccBSI CCGCTC 1 cut(s) 169
AciI CCGC 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 43
AgsI TTSAA 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 123
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 123
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 170
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 2 cut(s) 159, 167
BlsI GCNGC 2 cut(s) 160, 168
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 111
BmsI GCATC 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 65
Bse118I RCCGGY 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 65
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 123
BspACI CCGC 1 cut(s) 167
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 111
BsrBI CCGCTC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 65
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 42
CviJI RGCY 1 cut(s) 76
CviKI_1 RGCY 1 cut(s) 76
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaiI YATR 5 cut(s) 12, 40, 47, 93, 189
FaqI GGGAC 1 cut(s) 127
Fnu4HI GCNGC 2 cut(s) 159, 167
Fsp4HI GCNGC 2 cut(s) 159, 167
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 159, 167
HaeIII GGCC 1 cut(s) 76
HapII CCGG 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 192
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 1 cut(s) 23
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 218, 229
Hpy188I TCNGA 1 cut(s) 206
Hpy8I GTNNAC 2 cut(s) 218, 229
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4IV ACGT 1 cut(s) 192
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 192
LpnPI CCDG 1 cut(s) 145
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 199
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 192
MbiI CCGCTC 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 2 cut(s) 59, 101
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 3 cut(s) 63, 66, 93
MslI CAYNNNNRTG 1 cut(s) 37
MspI CCGG 1 cut(s) 132
NlaIV GGNNCC 1 cut(s) 111
PkrI GCNGC 2 cut(s) 160, 168
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 75
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 37
SatI GCNGC 2 cut(s) 159, 167
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 123
SetI ASST 1 cut(s) 195
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 37
Sse9I AATT 2 cut(s) 59, 101
SsiI CCGC 1 cut(s) 167
SspMI CTAG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 36
TaiI ACGT 1 cut(s) 195
TasI AATT 2 cut(s) 59, 101
TatI WGTACW 1 cut(s) 41
TauI GCSGC 1 cut(s) 169
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 214
XspI CTAG 1 cut(s) 213
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.