RLG00000011829

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000424
Physical Location & Seq
Reverse (-)
13113586 .. 13114776
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011829

Sequence Viewer

Length: 1017 bp
ATGGCCGCCGTTCCGATTCCTTCAACGATCCACAGCTTGCCGTCTGGGATTATGGAAGACATTCTTCTACGGCTCTCGCTGAAGGAGATGATCAGATGTGTCTGTGTTTTGAAGTCGTGGAAGGCTTTAATTTGCAGCGAACAGTTCTACCAGAATCATCTCAAGAGGTCCCAAGAAACCAACCATTACCGAATGCTTGTGATGCAAGAAGATGACCCAGAGAGTGAGGCAGAGACGACAGCAGCCTTCTATTCGAGGGACAGATTCAGCAATGCTCGCAAGATTGTGGCACACCCTGAGAGAGTGACAGGATTTGTGGGCTGCTGTAATGGATTGCTTGCTGCTCCTGCACAATCTATATCACGATCGAGACCTGGCAATTTGGAATCCGACGATTCAGAAATAAATTCAAGAGAATTCCCTTTACACCCATTGAGTTGCCGGGAGGGACTCAAAGGACACATTCGATGTATGGTTTTGGATATGATCAATCCAGTAGTGACTACAAAATTGTTAGAATTGTGGGATTTAGTTGTTGCTCTTGATCTCTCAAGAGAAATTTACAACGAGTTTTCCACACCGTTTGCTGATGTCAAAGGCGGAATTGGTTTGGAGGTGTTGGGAGGTAGTCTCTGCATTTGTCTTAATCACTGGGAAACCAGTAATGAAGTCTGGAAAATGAATGAATATGGAGTGGCTGAATCTTGGGTTCATTTCTATACTGTTGAGCGGAAGGTTGTGGAAAAGGCGTTTGAGTATTGCACACCTTTGGTGTTATCAAAGACTGGTGAAAGGGTTCTTTTGCATAACGACTCTGATTTGACCGAGGGTTTCCTTTTCTGGTATAATTTGGAGAAAAACACTGGAAAAGTGGTTACAATTCTTGGTTTGCCCCTCCACTTTAGGGCAGCTATCTGTGCAGCCAACCTTGGTCTCCTTGTTGATCCGGTGACTTTTGCAAGGCAGCAACAAGTCCTTCCTGTAAAGAGGAAATATTCAAGCAGGAAAATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

339

Amino Acids

38.22

Weight (kDa)

6.38

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 730
AciI CCGC 3 cut(s) 6, 600, 730
AclWI GGATC 2 cut(s) 22, 938
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 406, 416, 558, 1008
AcuI CTGAAG 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 904
AgsI TTSAA 4 cut(s) 24, 112, 411, 999
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 2 cut(s) 36, 911
AluI AGCT 2 cut(s) 36, 911
Alw26I GTCTC 4 cut(s) 227, 364, 635, 938
AlwI GGATC 2 cut(s) 22, 938
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 7 cut(s) 135, 242, 321, 341, 908, 920, 964
ApoI RAATTY 4 cut(s) 406, 416, 558, 1008
Asp700I GAANNNNTTC 2 cut(s) 60, 795
AspS9I GGNCC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 2 cut(s) 800, 961
AvaII GGWCC 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 7 cut(s) 147, 254, 308, 328, 920, 932, 976
BceAI ACGGC 2 cut(s) 25, 86
BciT130I CCWGG 1 cut(s) 375
BclI TGATCA 2 cut(s) 90, 486
BcnI CCSGG 1 cut(s) 443
BcoDI GTCTC 4 cut(s) 227, 364, 635, 938
BisI GCNGC 8 cut(s) 6, 136, 243, 322, 342, 909, 921, 965
BlsI GCNGC 8 cut(s) 7, 137, 244, 323, 343, 910, 922, 966
Bme1390I CCNGG 2 cut(s) 375, 443
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 2 cut(s) 375, 443
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 661
BpiI GAAGAC 1 cut(s) 63
BplI GAGNNNNNCTC 2 cut(s) 615, 647
BpuEI CTTGAG 2 cut(s) 146, 535
BpuMI CCSGG 1 cut(s) 443
BsaI GGTCTC 2 cut(s) 364, 938
BsaJI CCNNGG 2 cut(s) 825, 928
BsaWI WCCGGW 1 cut(s) 946
Bsc4I CCNNNNNNNGG 1 cut(s) 904
Bse1I ACTGG 5 cut(s) 494, 656, 660, 790, 868
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 825, 928
BseLI CCNNNNNNNGG 1 cut(s) 904
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 5 cut(s) 494, 656, 660, 790, 868
BseXI GCAGC 7 cut(s) 147, 254, 308, 328, 920, 932, 976
BsgI GTGCAG 2 cut(s) 333, 939
Bsh1285I CGRYCG 1 cut(s) 368
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 368
BsiSI CCGG 2 cut(s) 442, 947
BslFI GGGAC 3 cut(s) 154, 272, 462
BslI CCNNNNNNNGG 1 cut(s) 904
BsmAI GTCTC 4 cut(s) 227, 364, 635, 938
BsmBI CGTCTC 1 cut(s) 227
BsmFI GGGAC 3 cut(s) 154, 272, 462
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 364, 938
Bsp143I GATC 6 cut(s) 27, 90, 365, 486, 544, 943
BspACI CCGC 3 cut(s) 6, 600, 730
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 170
BspPI GGATC 2 cut(s) 22, 938
BspTNI GGTCTC 2 cut(s) 364, 938
BsrBI CCGCTC 1 cut(s) 730
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 5 cut(s) 494, 656, 660, 790, 868
BssECI CCNNGG 2 cut(s) 825, 928
BssMI GATC 6 cut(s) 27, 90, 365, 486, 544, 943
BssT1I CCWWGG 1 cut(s) 928
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 3 cut(s) 144, 582, 724
BstC8I GCNNGC 3 cut(s) 38, 277, 339
BstDEI CTNAG 1 cut(s) 297
BstKTI GATC 6 cut(s) 30, 93, 368, 489, 547, 946
BstMAI GTCTC 4 cut(s) 227, 364, 635, 938
BstMBI GATC 6 cut(s) 27, 90, 365, 486, 544, 943
BstMCI CGRYCG 1 cut(s) 368
BstMWI GCNNNNNNNGC 4 cut(s) 202, 276, 347, 917
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 2 cut(s) 373, 441
BstV1I GCAGC 7 cut(s) 147, 254, 308, 328, 920, 932, 976
BstV2I GAAGAC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 649, 861
Cac8I GCNNGC 3 cut(s) 38, 277, 339
Cfr13I GGNCC 1 cut(s) 168
CspCI CAANNNNNGTGG 2 cut(s) 565, 600
CviJI RGCY 9 cut(s) 5, 36, 73, 125, 245, 321, 698, 911, 923
CviKI_1 RGCY 9 cut(s) 5, 36, 73, 125, 245, 321, 698, 911, 923
DdeI CTNAG 1 cut(s) 297
DpnI GATC 6 cut(s) 29, 92, 367, 488, 546, 945
DpnII GATC 6 cut(s) 27, 90, 365, 486, 544, 943
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 928
Eco31I GGTCTC 2 cut(s) 364, 938
Eco47I GGWCC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 168
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 928
ErhI CCWWGG 1 cut(s) 928
Esp3I CGTCTC 1 cut(s) 227
FaiI YATR 8 cut(s) 53, 359, 473, 485, 690, 720, 807, 846
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 3 cut(s) 154, 272, 462
FbaI TGATCA 2 cut(s) 90, 486
Fnu4HI GCNGC 8 cut(s) 6, 136, 243, 322, 342, 909, 921, 965
Fsp4HI GCNGC 8 cut(s) 6, 136, 243, 322, 342, 909, 921, 965
GluI GCNGC 8 cut(s) 6, 136, 243, 322, 342, 909, 921, 965
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 442, 947
HinfI GANTC 8 cut(s) 16, 154, 264, 386, 395, 450, 701, 812
HpaII CCGG 2 cut(s) 442, 947
HphI GGTGA 2 cut(s) 800, 961
Hpy188I TCNGA 5 cut(s) 15, 95, 391, 400, 817
Hpy188III TCNNGA 7 cut(s) 163, 363, 369, 411, 542, 552, 673
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 6 cut(s) 30, 76, 115, 256, 727, 986
HpyCH4III ACNGT 3 cut(s) 144, 582, 724
HpyCH4V TGCA 8 cut(s) 135, 205, 350, 636, 762, 805, 920, 959
HpyF10VI GCNNNNNNNGC 4 cut(s) 202, 276, 347, 917
HpyF3I CTNAG 1 cut(s) 297
Ksp22I TGATCA 2 cut(s) 90, 486
Kzo9I GATC 6 cut(s) 27, 90, 365, 486, 544, 943
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 7 cut(s) 147, 254, 308, 328, 920, 932, 976
LweI GCATC 1 cut(s) 192
MaeIII GTNAC 4 cut(s) 304, 499, 874, 949
MalI GATC 6 cut(s) 29, 92, 367, 488, 546, 945
MbiI CCGCTC 1 cut(s) 730
MboI GATC 6 cut(s) 27, 90, 365, 486, 544, 943
MboII GAAGA 3 cut(s) 56, 68, 221
MlyI GAGTC 2 cut(s) 444, 806
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 9 cut(s) 159, 220, 249, 439, 607, 617, 820, 905, 981
MroXI GAANNNNTTC 2 cut(s) 60, 795
MseI TTAA 2 cut(s) 128, 645
MspI CCGG 2 cut(s) 442, 947
MspR9I CCNGG 2 cut(s) 375, 443
Mva1269I GAATGC 1 cut(s) 198
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 4 cut(s) 202, 276, 347, 917
NciI CCSGG 1 cut(s) 443
NdeII GATC 6 cut(s) 27, 90, 365, 486, 544, 943
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 3 cut(s) 304, 499, 949
PctI GAATGC 1 cut(s) 198
PdmI GAANNNNTTC 2 cut(s) 60, 795
PfeI GAWTC 6 cut(s) 16, 154, 264, 386, 395, 701
PkrI GCNGC 8 cut(s) 7, 137, 244, 323, 343, 910, 922, 966
Ple19I CGATCG 1 cut(s) 368
PleI GAGTC 2 cut(s) 444, 806
PpsI GAGTC 2 cut(s) 444, 806
PpuMI RGGWCCY 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 168
PspPPI RGGWCCY 1 cut(s) 168
PvuI CGATCG 1 cut(s) 368
SaqAI TTAA 2 cut(s) 128, 645
SatI GCNGC 8 cut(s) 6, 136, 243, 322, 342, 909, 921, 965
Sau3AI GATC 6 cut(s) 27, 90, 365, 486, 544, 943
Sau96I GGNCC 1 cut(s) 168
SchI GAGTC 2 cut(s) 444, 806
ScrFI CCNGG 2 cut(s) 375, 443
SetI ASST 9 cut(s) 38, 170, 376, 618, 628, 738, 769, 913, 930
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 1 cut(s) 168
SmlI CTYRAG 2 cut(s) 161, 550
SmoI CTYRAG 2 cut(s) 161, 550
SsiI CCGC 3 cut(s) 6, 600, 730
SspI AATATT 1 cut(s) 995
StyD4I CCNGG 2 cut(s) 373, 441
StyI CCWWGG 1 cut(s) 928
TaaI ACNGT 3 cut(s) 144, 582, 724
TaqI TCGA 3 cut(s) 254, 368, 466
TaqII GACCGA 1 cut(s) 839
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 6 cut(s) 16, 154, 264, 386, 395, 701
Tru1I TTAA 2 cut(s) 128, 645
Tru9I TTAA 2 cut(s) 128, 645
TscAI CASTG 2 cut(s) 656, 868
TseFI GTSAC 3 cut(s) 304, 499, 949
TseI GCWGC 7 cut(s) 135, 242, 321, 341, 908, 920, 964
Tsp45I GTSAC 3 cut(s) 304, 499, 949
TspDTI ATGAA 4 cut(s) 681, 695, 699, 701
TspRI CASTG 2 cut(s) 656, 868
VpaK11BI GGWCC 1 cut(s) 168
XapI RAATTY 4 cut(s) 406, 416, 558, 1008
XmnI GAANNNNTTC 2 cut(s) 60, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.