Rmu_sc0008966.1_g000003

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008966.1
OG0000424
Physical Location & Seq
Reverse (-)
16124 .. 21071
4948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008966.1_g000003.1.cds

Sequence Viewer

Length: 2130 bp
atgcgtgtttgtaaagcttggaagaccaccatccgcagccaagagtttatcaaagcccagcacgatcgctccatgaagaccaacagtcctcgcaccattgtacttttacaacgcggttcctacgacccttgtaaatatttctcttcatctgtttattttgacagagatgtattcagtaatgctgtgaggataaagcagccattggaacaccctgacgaagagaccctcatgctgggttactgtaacggtttggtttgcataaagtactctaactcaatatcgaatgctgcgagttttgtggtatggaatccgtcaattcaaaggttcaagagaattcccttcacagccatcgagctgccagctgacactgggaacagaattccaaagtacgggtttgggtatgattcgaccaatgatgactataaactagtgagagtggtagtgtttacaaataatgatggggatgaagtactgaattcggaagtgaagatttatagtctaaaatctaactcatggaaaaggatccaaagtttgccttgcattaaggattttcaaatgtattcaaaagatctgtcctttttgaatggtgctctacattgcctgattcgtcataggtcagatagtaagatgaaacgaattctatctcttgatcttgcaactgagaagtatgacgactttctggccccgccggtagattacgagaatcctacaatattgatgttggagatcttgggaggatatctatgtgtttgtcctagaccttctccacccgcaaagtggttcccccgaagtgatgtatggattatgaaggaatatggagtggcagcatcttggactcggttatgtactattaagcaggaggatatgcctcggatgaggtacggatattgcaaacctttgttattttcaaagacgcgagaaatgattcttttcaaaagaagttgggccacgcttttctggtatgatttagagaaaaagagggcaaaacaaattgacatgtttgataagccctcatccttttcgactgctatttgtgtgggaaaccttcgtctccttgatggtgaacctgtaactgttcgtggaagcttctccattattcccggtcaaggctccccgctccagtccgcattcattgctgtcgaatggatctatctcgagcctatcggcgacctgaacttgcctccaacagacgagacgcaaaggctgaggcaagaactcgagcaatttcggatggaaaagcaggaccgcgaggctcgttgtcgacgaaaacttgaaaggttcctacaacttgacaatgattcgtcagacaatgaggccatcgacgatctccatcaaactaacaacgtagtagcaaacacatgcgccaacggctttattaagggaatctttggtggacccctcatcgagggggtgggaggcaagtcaaatggggggcagaatggcggagccgaattaggccaatccaaaagggcacgcaacaaatcgtggtgtgagaagatggaaaaaatgattgatgcatgcaagcgtgccgacccacgagagctggaggcggaaattgcaagggacgtcggtatgtctccgtttatcgatgacattttgaatgcggcaaaacctcgccggtttaccaccctgtctcacggggccggcgttgacatggttccaagacctcaaaccgcattccataccggattatacacattaagtcgtgctttcatttcacaatacttctgcaatcgcaaacaaaagaaggacttgaagccaggggaaaaggacatggacgacatcattacaagggttgagggggagatcagaattgaaaaagccaaagaagcacgcgaggcccgactcactgccgttgtcacctcaagagaagttgaatggaataacacaaagaatgacattcatagtgatagaggagggaaacctcaagattatccccttgaagaatggatgacgtgcctcaccctcgctgcaggcgagggtgggatgatggaccacacccttcgccgcgggcaggagtgggatggtggaccacaccctcgctgcaggcgggggtgggatgacgtgcctcacccctcgcccgggcgggagtgggatgatggaccacaccctcgctgcaggcgagggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

709

Amino Acids

81.11

Weight (kDa)

8.67

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1569
AccBSI CCGCTC 1 cut(s) 1117
AccI GTMKAC 1 cut(s) 1261
AccII CGCG 5 cut(s) 114, 916, 1248, 1836, 2010
AclWI GGATC 3 cut(s) 517, 530, 1154
AcsI RAATTY 4 cut(s) 333, 378, 475, 636
AcyI GRCGYC 1 cut(s) 1566
AfaI GTAC 6 cut(s) 102, 266, 389, 471, 847, 881
AfiI CCNNNNNNNGG 8 cut(s) 232, 389, 777, 1106, 1405, 2014, 2081, 2082
AflIII ACRYGT 1 cut(s) 996
AhdI GACNNNNNGTC 1 cut(s) 84
AhlI ACTAGT 1 cut(s) 427
AjiI CACGTC 2 cut(s) 1956, 2065
AjnI CCWGG 1 cut(s) 1759
AluBI AGCT 5 cut(s) 17, 355, 362, 1086, 1543
AluI AGCT 5 cut(s) 17, 355, 362, 1086, 1543
Alw21I GWGCWC 1 cut(s) 592
Alw26I GTCTC 5 cut(s) 215, 1055, 1187, 1581, 1638
AlwI GGATC 3 cut(s) 517, 530, 1154
Ama87I CYCGRG 3 cut(s) 1154, 1217, 2081
AoxI GGCC 6 cut(s) 681, 945, 1314, 1456, 1641, 1839
ApeKI GCWGC 8 cut(s) 36, 196, 287, 355, 824, 1970, 2043, 2115
ApoI RAATTY 4 cut(s) 333, 378, 475, 636
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
Asp700I GAANNNNTTC 1 cut(s) 924
AspLEI GCGC 1 cut(s) 1364
AspS9I GGNCC 9 cut(s) 682, 945, 1243, 1394, 1641, 1840, 1993, 2030, 2102
AsuC2I CCSGG 3 cut(s) 1101, 2082, 2083
AsuHPI GGTGA 4 cut(s) 1073, 1852, 1954, 2063
AvaI CYCGRG 3 cut(s) 1154, 1217, 2081
AvaII GGWCC 5 cut(s) 1243, 1394, 1993, 2030, 2102
BaeGI GKGCMC 1 cut(s) 1474
BamHI GGATCC 1 cut(s) 522
BauI CACGAG 1 cut(s) 1536
BbsI GAAGAC 2 cut(s) 29, 83
Bbv12I GWGCWC 1 cut(s) 592
BbvCI CCTCAGC 1 cut(s) 1205
BbvI GCAGC 8 cut(s) 48, 208, 274, 342, 836, 1957, 2030, 2102
BceAI ACGGC 2 cut(s) 1384, 1838
BciT130I CCWGG 1 cut(s) 1761
BcnI CCSGG 3 cut(s) 1101, 2082, 2083
BcoDI GTCTC 5 cut(s) 215, 1055, 1187, 1581, 1638
BcuI ACTAGT 1 cut(s) 427
BfaI CTAG 2 cut(s) 428, 756
BfmI CTRYAG 3 cut(s) 1971, 2044, 2116
BglII AGATCT 2 cut(s) 568, 726
BmcAI AGTACT 2 cut(s) 266, 471
Bme1390I CCNGG 4 cut(s) 1101, 1761, 2082, 2083
Bme18I GGWCC 5 cut(s) 1243, 1394, 1993, 2030, 2102
BmeRI GACNNNNNGTC 1 cut(s) 84
BmeT110I CYCGRG 3 cut(s) 1154, 1217, 2081
BmgBI CACGTC 2 cut(s) 1956, 2065
BmgT120I GGNCC 9 cut(s) 682, 945, 1243, 1394, 1641, 1840, 1993, 2030, 2102
BmrFI CCNGG 4 cut(s) 1101, 1761, 2082, 2083
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 2 cut(s) 836, 1504
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 2 cut(s) 29, 83
BpmI CTGGAG 2 cut(s) 1103, 1565
Bpu10I CCTNAGC 1 cut(s) 1205
BpuEI CTTGAG 2 cut(s) 1849, 1911
BpuMI CCSGG 3 cut(s) 1101, 2082, 2083
Bsa29I ATCGAT 1 cut(s) 1587
BsaBI GATNNNNATC 1 cut(s) 1329
BsaHI GRCGYC 1 cut(s) 1566
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 4 cut(s) 869, 1760, 2008, 2081
BsaWI WCCGGW 1 cut(s) 1685
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 8 cut(s) 232, 389, 777, 1106, 1405, 2014, 2081, 2082
Bse118I RCCGGY 3 cut(s) 688, 1617, 1643
Bse1I ACTGG 2 cut(s) 373, 1120
Bse3DI GCAATG 2 cut(s) 595, 1131
Bse8I GATNNNNATC 1 cut(s) 1329
BseBI CCWGG 1 cut(s) 1761
BseCI ATCGAT 1 cut(s) 1587
BseDI CCNNGG 4 cut(s) 869, 1760, 2008, 2081
BseJI GATNNNNATC 1 cut(s) 1329
BseLI CCNNNNNNNGG 8 cut(s) 232, 389, 777, 1106, 1405, 2014, 2081, 2082
BseMI GCAATG 2 cut(s) 595, 1131
BseMII CTCAG 2 cut(s) 651, 1196
BseNI ACTGG 2 cut(s) 373, 1120
BseRI GAGGAG 1 cut(s) 1929
BseSI GKGCMC 1 cut(s) 1474
BseXI GCAGC 8 cut(s) 48, 208, 274, 342, 836, 1957, 2030, 2102
BseYI CCCAGC 2 cut(s) 57, 232
Bsh1236I CGCG 5 cut(s) 114, 916, 1248, 1836, 2010
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 6 cut(s) 683, 947, 1316, 1458, 1643, 1841
BshVI ATCGAT 1 cut(s) 1587
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 592
BsiHKCI CYCGRG 3 cut(s) 1154, 1217, 2081
BsiSI CCGG 6 cut(s) 689, 1101, 1618, 1644, 1686, 2082
BslFI GGGAC 1 cut(s) 1577
BslI CCNNNNNNNGG 8 cut(s) 232, 389, 777, 1106, 1405, 2014, 2081, 2082
BsmAI GTCTC 5 cut(s) 215, 1055, 1187, 1581, 1638
BsmBI CGTCTC 2 cut(s) 1055, 1187
BsmFI GGGAC 1 cut(s) 1577
BsmI GAATGC 4 cut(s) 289, 1127, 1606, 1676
BsnI GGCC 6 cut(s) 683, 947, 1316, 1458, 1643, 1841
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 3 cut(s) 1154, 1217, 2081
Bsp1286I GDGCHC 2 cut(s) 592, 1474
Bsp143I GATC 8 cut(s) 64, 522, 568, 649, 726, 1146, 1324, 1806
BspANI GGCC 6 cut(s) 683, 947, 1316, 1458, 1643, 1841
BspCNI CTCAG 2 cut(s) 652, 1197
BspDI ATCGAT 1 cut(s) 1587
BspFNI CGCG 5 cut(s) 114, 916, 1248, 1836, 2010
BspMAI CTGCAG 3 cut(s) 1975, 2048, 2120
BspPI GGATC 3 cut(s) 517, 530, 1154
BspTNI GGTCTC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 1117
BsrDI GCAATG 2 cut(s) 595, 1131
BsrFI RCCGGY 3 cut(s) 688, 1617, 1643
BsrI ACTGG 2 cut(s) 373, 1120
BssAI RCCGGY 3 cut(s) 688, 1617, 1643
BssECI CCNNGG 4 cut(s) 869, 1760, 2008, 2081
BssMI GATC 8 cut(s) 64, 522, 568, 649, 726, 1146, 1324, 1806
BssNI GRCGYC 1 cut(s) 1566
BssSI CACGAG 1 cut(s) 1536
Bst2BI CACGAG 1 cut(s) 1536
Bst2UI CCWGG 1 cut(s) 1761
Bst4CI ACNGT 4 cut(s) 86, 242, 248, 1075
Bst6I CTCTTC 2 cut(s) 148, 213
BstACI GRCGYC 1 cut(s) 1566
BstAPI GCANNNNNTGC 1 cut(s) 1133
BstDEI CTNAG 2 cut(s) 660, 1205
BstDSI CCRYGG 1 cut(s) 2008
BstENI CCTNNNNNAGG 1 cut(s) 1403
BstFNI CGCG 5 cut(s) 114, 916, 1248, 1836, 2010
BstHHI GCGC 1 cut(s) 1364
BstKTI GATC 8 cut(s) 67, 525, 571, 652, 729, 1149, 1327, 1809
BstMAI GTCTC 5 cut(s) 215, 1055, 1187, 1581, 1638
BstMBI GATC 8 cut(s) 64, 522, 568, 649, 726, 1146, 1324, 1806
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 5 cut(s) 1133, 1368, 1556, 1829, 1838
BstNI CCWGG 1 cut(s) 1761
BstNSI RCATGY 3 cut(s) 1000, 1362, 1521
BstSCI CCNGG 4 cut(s) 1099, 1759, 2080, 2081
BstSFI CTRYAG 3 cut(s) 1971, 2044, 2116
BstSLI GKGCMC 1 cut(s) 1474
BstUI CGCG 5 cut(s) 114, 916, 1248, 1836, 2010
BstV1I GCAGC 8 cut(s) 48, 208, 274, 342, 836, 1957, 2030, 2102
BstV2I GAAGAC 2 cut(s) 29, 83
BstX2I RGATCY 4 cut(s) 522, 568, 726, 1146
BstYI RGATCY 4 cut(s) 522, 568, 726, 1146
Bsu15I ATCGAT 1 cut(s) 1587
BsuRI GGCC 6 cut(s) 683, 947, 1316, 1458, 1643, 1841
BsuTUI ATCGAT 1 cut(s) 1587
BtgI CCRYGG 1 cut(s) 2008
BtrI CACGTC 2 cut(s) 1956, 2065
BtsI GCAGTG 1 cut(s) 1848
BtsIMutI CAGTG 2 cut(s) 366, 1848
CfoI GCGC 1 cut(s) 1364
Cfr10I RCCGGY 3 cut(s) 688, 1617, 1643
Cfr13I GGNCC 9 cut(s) 682, 945, 1243, 1394, 1641, 1840, 1993, 2030, 2102
Cfr42I CCGCGG 1 cut(s) 2011
Cfr9I CCCGGG 1 cut(s) 2081
ClaI ATCGAT 1 cut(s) 1587
CseI GACGC 2 cut(s) 922, 1204
Csp6I GTAC 6 cut(s) 101, 265, 388, 470, 846, 880
CviAII CATG 8 cut(s) 73, 229, 513, 997, 1359, 1518, 1654, 1774
CviQI GTAC 6 cut(s) 101, 265, 388, 470, 846, 880
DdeI CTNAG 2 cut(s) 660, 1205
DpnI GATC 8 cut(s) 66, 524, 570, 651, 728, 1148, 1326, 1808
DpnII GATC 8 cut(s) 64, 522, 568, 649, 726, 1146, 1324, 1806
DriI GACNNNNNGTC 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 148, 213
Eam1105I GACNNNNNGTC 1 cut(s) 84
EarI CTCTTC 2 cut(s) 148, 213
EciI GGCGGA 2 cut(s) 1458, 1565
Eco31I GGTCTC 1 cut(s) 215
Eco32I GATATC 1 cut(s) 740
Eco47I GGWCC 5 cut(s) 1243, 1394, 1993, 2030, 2102
Eco88I CYCGRG 3 cut(s) 1154, 1217, 2081
EcoNI CCTNNNNNAGG 1 cut(s) 1403
EcoRI GAATTC 4 cut(s) 333, 378, 475, 636
EcoRII CCWGG 1 cut(s) 1759
EcoRV GATATC 1 cut(s) 740
EcoT22I ATGCAT 1 cut(s) 1519
Esp3I CGTCTC 2 cut(s) 1055, 1187
FaeI CATG 8 cut(s) 76, 232, 516, 1000, 1362, 1521, 1657, 1777
FalI AAGNNNNNCTT 8 cut(s) 520, 552, 1370, 1402, 1693, 1725, 1736, 1768
FaqI GGGAC 1 cut(s) 1577
FatI CATG 8 cut(s) 72, 228, 512, 996, 1358, 1517, 1653, 1773
FauI CCCGC 6 cut(s) 693, 778, 1122, 2003, 2043, 2079
FblI GTMKAC 1 cut(s) 1261
FspBI CTAG 2 cut(s) 428, 756
GlaI GCGC 1 cut(s) 1363
GsaI CCCAGC 2 cut(s) 61, 236
GsuI CTGGAG 2 cut(s) 1103, 1565
HaeIII GGCC 6 cut(s) 683, 947, 1316, 1458, 1643, 1841
HapII CCGG 6 cut(s) 689, 1101, 1618, 1644, 1686, 2082
HgaI GACGC 2 cut(s) 922, 1204
HhaI GCGC 1 cut(s) 1364
Hin1I GRCGYC 1 cut(s) 1566
Hin1II CATG 8 cut(s) 76, 232, 516, 1000, 1362, 1521, 1657, 1777
Hin6I GCGC 1 cut(s) 1362
HinP1I GCGC 1 cut(s) 1362
HincII GTYRAC 2 cut(s) 1262, 1651
HindII GTYRAC 2 cut(s) 1262, 1651
HindIII AAGCTT 2 cut(s) 15, 1084
HinfI GANTC 9 cut(s) 307, 404, 604, 703, 835, 925, 1298, 1383, 1845
HpaII CCGG 6 cut(s) 689, 1101, 1618, 1644, 1686, 2082
HphI GGTGA 4 cut(s) 1073, 1852, 1954, 2063
Hpy166II GTNNAC 7 cut(s) 447, 1064, 1262, 1394, 1623, 1651, 2030
Hpy188I TCNGA 6 cut(s) 481, 619, 873, 1230, 1306, 1811
Hpy188III TCNNGA 5 cut(s) 328, 647, 1154, 1866, 1928
Hpy8I GTNNAC 7 cut(s) 447, 1064, 1262, 1394, 1623, 1651, 2030
Hpy99I CGWCG 3 cut(s) 1266, 1325, 1571
HpyAV CCTTC 6 cut(s) 349, 771, 802, 1055, 1741, 2012
HpyCH4III ACNGT 4 cut(s) 86, 242, 248, 1075
HpyCH4IV ACGT 4 cut(s) 1344, 1566, 1955, 2064
HpyF10VI GCNNNNNNNGC 5 cut(s) 1133, 1368, 1556, 1829, 1838
HpyF3I CTNAG 2 cut(s) 660, 1205
HpySE526I ACGT 4 cut(s) 1344, 1566, 1955, 2064
Hsp92I GRCGYC 1 cut(s) 1566
Hsp92II CATG 8 cut(s) 76, 232, 516, 1000, 1362, 1521, 1657, 1777
HspAI GCGC 1 cut(s) 1362
KroI GCCGGC 1 cut(s) 1643
KroNI GCCGGC 1 cut(s) 1645
KspI CCGCGG 1 cut(s) 2011
Kzo9I GATC 8 cut(s) 64, 522, 568, 649, 726, 1146, 1324, 1806
LmnI GCTCC 4 cut(s) 74, 1115, 1122, 1445
Lsp1109I GCAGC 8 cut(s) 48, 208, 274, 342, 836, 1957, 2030, 2102
LweI GCATC 2 cut(s) 836, 1504
MaeI CTAG 2 cut(s) 428, 756
MaeII ACGT 4 cut(s) 1344, 1566, 1955, 2064
MaeIII GTNAC 4 cut(s) 236, 242, 1069, 1858
MalI GATC 8 cut(s) 66, 524, 570, 651, 728, 1148, 1326, 1808
MbiI CCGCTC 1 cut(s) 1117
MboI GATC 8 cut(s) 64, 522, 568, 649, 726, 1146, 1324, 1806
MboII GAAGA 7 cut(s) 34, 88, 135, 230, 499, 1507, 1955
MflI RGATCY 4 cut(s) 522, 568, 726, 1146
MhlI GDGCHC 2 cut(s) 592, 1474
MlyI GAGTC 2 cut(s) 829, 1839
MmeI TCCRAC 2 cut(s) 702, 1208
Mph1103I ATGCAT 1 cut(s) 1519
MroNI GCCGGC 1 cut(s) 1643
MroXI GAANNNNTTC 1 cut(s) 924
MseI TTAA 4 cut(s) 543, 852, 1377, 1700
MspA1I CMGCKG 2 cut(s) 362, 2010
MspI CCGG 6 cut(s) 689, 1101, 1618, 1644, 1686, 2082
MspR9I CCNGG 4 cut(s) 1101, 1761, 2082, 2083
Mva1269I GAATGC 4 cut(s) 289, 1127, 1606, 1676
MvaI CCWGG 1 cut(s) 1761
MvnI CGCG 5 cut(s) 114, 916, 1248, 1836, 2010
MwoI GCNNNNNNNGC 5 cut(s) 1133, 1368, 1556, 1829, 1838
NaeI GCCGGC 1 cut(s) 1645
NciI CCSGG 3 cut(s) 1101, 2082, 2083
NdeII GATC 8 cut(s) 64, 522, 568, 649, 726, 1146, 1324, 1806
NgoMIV GCCGGC 1 cut(s) 1643
NlaIII CATG 8 cut(s) 76, 232, 516, 1000, 1362, 1521, 1657, 1777
NmuCI GTSAC 1 cut(s) 1858
NsiI ATGCAT 1 cut(s) 1519
NspI RCATGY 3 cut(s) 1000, 1362, 1521
PaeI GCATGC 1 cut(s) 1521
PaeR7I CTCGAG 2 cut(s) 1154, 1217
PciI ACATGT 1 cut(s) 996
PcsI WCGNNNNNNNCGW 6 cut(s) 287, 1261, 1644, 1840, 1974, 2119
PctI GAATGC 4 cut(s) 289, 1127, 1606, 1676
PdiI GCCGGC 1 cut(s) 1645
PdmI GAANNNNTTC 1 cut(s) 924
PfeI GAWTC 7 cut(s) 307, 404, 604, 703, 925, 1298, 1383
Ple19I CGATCG 1 cut(s) 67
PleI GAGTC 2 cut(s) 829, 1839
PpsI GAGTC 2 cut(s) 829, 1839
PscI ACATGT 1 cut(s) 996
Psp6I CCWGG 1 cut(s) 1759
PspFI CCCAGC 2 cut(s) 57, 232
PspGI CCWGG 1 cut(s) 1759
PspPI GGNCC 9 cut(s) 682, 945, 1243, 1394, 1641, 1840, 1993, 2030, 2102
PspXI VCTCGAGB 1 cut(s) 1217
PstI CTGCAG 3 cut(s) 1975, 2048, 2120
PsuI RGATCY 4 cut(s) 522, 568, 726, 1146
PvuI CGATCG 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 6 cut(s) 102, 266, 389, 471, 847, 881
RsaNI GTAC 6 cut(s) 101, 265, 388, 470, 846, 880
SacII CCGCGG 1 cut(s) 2011
SalI GTCGAC 1 cut(s) 1260
SaqAI TTAA 4 cut(s) 543, 852, 1377, 1700
Sau3AI GATC 8 cut(s) 64, 522, 568, 649, 726, 1146, 1324, 1806
Sau96I GGNCC 9 cut(s) 682, 945, 1243, 1394, 1641, 1840, 1993, 2030, 2102
ScaI AGTACT 2 cut(s) 266, 471
SchI GAGTC 2 cut(s) 829, 1839
ScrFI CCNGG 4 cut(s) 1101, 1761, 2082, 2083
SduI GDGCHC 2 cut(s) 592, 1474
SfaNI GCATC 2 cut(s) 836, 1504
SfcI CTRYAG 3 cut(s) 1971, 2044, 2116
Sfr274I CTCGAG 2 cut(s) 1154, 1217
Sfr303I CCGCGG 1 cut(s) 2011
SgrBI CCGCGG 1 cut(s) 2011
SinI GGWCC 5 cut(s) 1243, 1394, 1993, 2030, 2102
SlaI CTCGAG 2 cut(s) 1154, 1217
SmaI CCCGGG 1 cut(s) 2083
SmlI CTYRAG 4 cut(s) 1154, 1217, 1864, 1926
SmoI CTYRAG 4 cut(s) 1154, 1217, 1864, 1926
SpeI ACTAGT 1 cut(s) 427
SphI GCATGC 1 cut(s) 1521
SrfI GCCCGGGC 1 cut(s) 2083
SspI AATATT 2 cut(s) 137, 714
SspMI CTAG 2 cut(s) 428, 756
StyD4I CCNGG 4 cut(s) 1099, 1759, 2080, 2081
TaaI ACNGT 4 cut(s) 86, 242, 248, 1075
TaiI ACGT 4 cut(s) 1347, 1569, 1958, 2067
TatI WGTACW 4 cut(s) 100, 264, 469, 845
TauI GCSGC 2 cut(s) 1607, 2010
TfiI GAWTC 7 cut(s) 307, 404, 604, 703, 925, 1298, 1383
Tru1I TTAA 4 cut(s) 543, 852, 1377, 1700
Tru9I TTAA 4 cut(s) 543, 852, 1377, 1700
TscAI CASTG 2 cut(s) 373, 1855
TseFI GTSAC 1 cut(s) 1858
TseI GCWGC 8 cut(s) 36, 196, 287, 355, 824, 1970, 2043, 2115
Tsp45I GTSAC 1 cut(s) 1858
TspDTI ATGAA 8 cut(s) 89, 135, 480, 644, 821, 1120, 1702, 1892
TspGWI ACGGA 3 cut(s) 300, 897, 1569
TspMI CCCGGG 1 cut(s) 2081
TspRI CASTG 2 cut(s) 373, 1855
VpaK11BI GGWCC 5 cut(s) 1243, 1394, 1993, 2030, 2102
XagI CCTNNNNNAGG 1 cut(s) 1403
XapI RAATTY 4 cut(s) 333, 378, 475, 636
XceI RCATGY 3 cut(s) 1000, 1362, 1521
XcmI CCANNNNNNNNNTGG 1 cut(s) 774
XhoI CTCGAG 2 cut(s) 1154, 1217
XmaI CCCGGG 1 cut(s) 2081
XmiI GTMKAC 1 cut(s) 1261
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 2 cut(s) 428, 756
ZraI GACGTC 1 cut(s) 1567
ZrmI AGTACT 2 cut(s) 266, 471
Zsp2I ATGCAT 1 cut(s) 1519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.