MD07G1058900.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000424
Physical Location & Seq
Reverse (-)
5481462 .. 5482643
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1058900.v1.1.491

Sequence Viewer

Length: 1182 bp
ATGATTAGGTGGAATCCTTTCCTGATTTCTCCAGATTATTGTTGCTCCTCAGAGAAGAAACCAACGTCAATGTCAGACTTCCCACCGGAGCTACTGTTCGACATCCTATCAAGGCTTCCGCCCAAGGATTTGATTCGATTCCTCAGCGTTTCCAAAGCTTGGAATGCCATCATCCGCCACCACCACTTCATCAAAGCTCATCTTCAACGCTCCATCCAAACCAATTCCTTTCGCACCATTTTAGTCAGGTCAATTGGCTCCCCCTCATCAGATTATTTTTCATCGGCTGTCAACGGCAGCGAAACGTTCCGGACAGTCGTTAAAATTGAGCGGCCGTTGAAATCCCCTGAGAGGTATCAGATACTGGGGTGCTCGATTCATGGAGTGGTTTGCATTTGCAATAGTCTCCGTACTAATGTCGCTTTGTGGAACCCGTCAATTCAAAAGTTTAAGATGATTCCCCTCCCAGCCATTGAGCAGCAGCAGCCATCATCAGATTTACATACATCCCTAGGGTTCGGGTATGATTCAGTTTATGATGACTTTAAACATTTGCGAATTGCGGAGCTTAGTAAGGGAGTCTTTGTGAGTTCTGAAGTTAGTATTTATAGCCTCATATTGAACTCATGGAAAAGGATCAAGAACTTGCCTCGCAATGATTTTAGTACACTGAATGTGTATGACACGGCGCTGGAGTTTTCAAATGGTGCTCTGTGTTGGCTAATGCCGAACAGATTAGATATGTATCGATTCATAATTCTGACCTTTGATCTTGCTACTGAAAAGTATCGGGAGTTTGACACCCCGGTGGATGAGGATTACAGTACCGTCATGGAGTTGGAGGTTTTAGGGGGCTCTCTATGTGTTTCTGTTCATGATTGGGACACCGGAAATGATGTTTGGATTATGAAGGATTTTGGAGGACCTTGGACCCTTCTGTATTCTATTAAAAAGGAAACTATGACTTGGTTGCTTAACTATTGCCCACCTTTGGTCTTCGCAAAGAACGGTGAAATGGCTCTTTTGAAGAAGGACGAGGAAGCATTTGTTTGGTTTGATTTAAAGGGAAAAATCGGATACCAAGATAATATTTGCGGTCTGCCACTTCGCTTTGATGCAAAGATATGCGAGGGCAGCCTTTGTCTTATTGATGGTGATCCCGTGATTGGTGGGAGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

394

Amino Acids

44.9

Weight (kDa)

6.26

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 63 4e-11 F-box domain
F-box-like PF12937 25 - 61 2.8e-09 F-box-like
FBA_3 PF08268 98 - 311 7.6e-15 F-box associated beta propeller domain
FBA_1 PF07734 115 - 353 1.3e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 159
AccBSI CCGCTC 1 cut(s) 331
AccIII TCCGGA 1 cut(s) 309
AciI CCGC 5 cut(s) 119, 175, 331, 563, 1095
AclI AACGTT 1 cut(s) 305
AclWI GGATC 2 cut(s) 644, 1151
AcoI YGGCCR 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 3 cut(s) 412, 667, 826
AfiI CCNNNNNNNGG 4 cut(s) 159, 351, 991, 1166
AgsI TTSAA 6 cut(s) 206, 340, 443, 622, 702, 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 883, 915
AleI CACNNNNGTG 1 cut(s) 806
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 4 cut(s) 91, 158, 197, 568
AluI AGCT 4 cut(s) 91, 158, 197, 568
Alw21I GWGCWC 2 cut(s) 374, 712
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 2 cut(s) 644, 1151
AlwNI CAGNNNCTG 1 cut(s) 364
Aor13HI TCCGGA 1 cut(s) 309
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 5 cut(s) 297, 478, 481, 484, 1134
Asp700I GAANNNNTTC 1 cut(s) 17
AspA2I CCTAGG 1 cut(s) 511
AspLEI GCGC 1 cut(s) 691
AspS9I GGNCC 2 cut(s) 923, 930
AsuC2I CCSGG 1 cut(s) 806
AsuHPI GGTGA 2 cut(s) 1022, 1166
AvaII GGWCC 2 cut(s) 923, 930
AvrII CCTAGG 1 cut(s) 511
BaeI ACNNNNGTAYC 2 cut(s) 353, 386
BanII GRGCYC 1 cut(s) 857
BbsI GAAGAC 1 cut(s) 988
Bbv12I GWGCWC 2 cut(s) 374, 712
BbvCI CCTCAGC 1 cut(s) 143
BbvI GCAGC 5 cut(s) 309, 490, 493, 496, 1146
BccI CCATC 4 cut(s) 176, 221, 496, 1145
BceAI ACGGC 3 cut(s) 310, 319, 702
BciVI GTATCC 1 cut(s) 1070
BcnI CCSGG 1 cut(s) 806
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 1 cut(s) 512
BfoI RGCGCY 1 cut(s) 692
BfuI GTATCC 1 cut(s) 1070
BisI GCNGC 6 cut(s) 298, 332, 479, 482, 485, 1135
BlnI CCTAGG 1 cut(s) 511
BlsI GCNGC 6 cut(s) 299, 333, 480, 483, 486, 1136
Bme1390I CCNGG 1 cut(s) 806
Bme18I GGWCC 2 cut(s) 923, 930
BmgT120I GGNCC 2 cut(s) 923, 930
BmiI GGNNCC 3 cut(s) 259, 431, 932
BmrFI CCNGG 1 cut(s) 806
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 1105
BmuI ACTGGG 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 988
BpmI CTGGAG 2 cut(s) 15, 713
Bpu10I CCTNAGC 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 806
Bsa29I ATCGAT 1 cut(s) 748
BsaBI GATNNNNATC 2 cut(s) 744, 1155
BsaJI CCNNGG 4 cut(s) 123, 511, 804, 926
BsaWI WCCGGW 3 cut(s) 85, 309, 887
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 570, 600
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 351, 991, 1166
Bse1I ACTGG 1 cut(s) 369
Bse3DI GCAATG 1 cut(s) 661
Bse8I GATNNNNATC 2 cut(s) 744, 1155
BseAI TCCGGA 1 cut(s) 309
BseCI ATCGAT 1 cut(s) 748
BseDI CCNNGG 4 cut(s) 123, 511, 804, 926
BseGI GGATG 5 cut(s) 102, 171, 213, 506, 817
BseJI GATNNNNATC 2 cut(s) 744, 1155
BseLI CCNNNNNNNGG 4 cut(s) 159, 351, 991, 1166
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 3 cut(s) 63, 157, 339
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 37
BseX3I CGGCCG 1 cut(s) 332
BseXI GCAGC 5 cut(s) 309, 490, 493, 496, 1146
BseYI CCCAGC 1 cut(s) 466
Bsh1285I CGRYCG 1 cut(s) 335
BshFI GGCC 1 cut(s) 334
BshVI ATCGAT 1 cut(s) 748
BsiEI CGRYCG 1 cut(s) 335
BsiHKAI GWGCWC 2 cut(s) 374, 712
BsiSI CCGG 4 cut(s) 86, 310, 806, 888
BslFI GGGAC 1 cut(s) 896
BslI CCNNNNNNNGG 4 cut(s) 159, 351, 991, 1166
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 896
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 1 cut(s) 334
Bsp1286I GDGCHC 3 cut(s) 374, 712, 857
Bsp13I TCCGGA 1 cut(s) 309
Bsp143I GATC 3 cut(s) 636, 769, 1156
BspACI CCGC 5 cut(s) 119, 175, 331, 563, 1095
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 3 cut(s) 62, 156, 340
BspDI ATCGAT 1 cut(s) 748
BspEI TCCGGA 1 cut(s) 309
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 3 cut(s) 259, 431, 932
BspPI GGATC 2 cut(s) 644, 1151
BsrBI CCGCTC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 661
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 4 cut(s) 123, 511, 804, 926
BssMI GATC 3 cut(s) 636, 769, 1156
BssT1I CCWWGG 3 cut(s) 123, 511, 926
Bst4CI ACNGT 5 cut(s) 96, 316, 824, 829, 1010
BstDEI CTNAG 4 cut(s) 49, 143, 348, 569
BstF5I GGATG 5 cut(s) 102, 171, 213, 506, 817
BstH2I RGCGCY 1 cut(s) 692
BstHHI GCGC 1 cut(s) 691
BstKTI GATC 3 cut(s) 639, 772, 1159
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 3 cut(s) 636, 769, 1156
BstMCI CGRYCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 3 cut(s) 164, 484, 1134
BstSCI CCNGG 1 cut(s) 804
BstV1I GCAGC 5 cut(s) 309, 490, 493, 496, 1146
BstV2I GAAGAC 1 cut(s) 988
BstZI CGGCCG 1 cut(s) 332
Bsu15I ATCGAT 1 cut(s) 748
BsuI GTATCC 1 cut(s) 1070
BsuRI GGCC 1 cut(s) 334
BsuTUI ATCGAT 1 cut(s) 748
BtsCI GGATG 5 cut(s) 102, 171, 213, 506, 817
BtsIMutI CAGTG 1 cut(s) 668
CaiI CAGNNNCTG 1 cut(s) 364
CciI TCATGA 1 cut(s) 874
CfoI GCGC 1 cut(s) 691
Cfr13I GGNCC 2 cut(s) 923, 930
ClaI ATCGAT 1 cut(s) 748
Csp6I GTAC 3 cut(s) 411, 666, 825
CviAII CATG 4 cut(s) 380, 627, 832, 875
CviQI GTAC 3 cut(s) 411, 666, 825
DdeI CTNAG 4 cut(s) 49, 143, 348, 569
DpnI GATC 3 cut(s) 638, 771, 1158
DpnII GATC 3 cut(s) 636, 769, 1156
DraI TTTAAA 2 cut(s) 547, 1062
EaeI YGGCCR 1 cut(s) 332
EagI CGGCCG 1 cut(s) 332
EciI GGCGGA 2 cut(s) 108, 164
EclXI CGGCCG 1 cut(s) 332
Eco130I CCWWGG 3 cut(s) 123, 511, 926
Eco24I GRGCYC 1 cut(s) 857
Eco47I GGWCC 2 cut(s) 923, 930
Eco52I CGGCCG 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 923
EcoT14I CCWWGG 3 cut(s) 123, 511, 926
EcoT38I GRGCYC 1 cut(s) 857
ErhI CCWWGG 3 cut(s) 123, 511, 926
FaeI CATG 4 cut(s) 383, 630, 835, 878
FalI AAGNNNNNCTT 4 cut(s) 186, 218, 566, 598
FaqI GGGAC 1 cut(s) 896
FatI CATG 4 cut(s) 379, 626, 831, 874
Fnu4HI GCNGC 6 cut(s) 298, 332, 479, 482, 485, 1135
FokI GGATG 5 cut(s) 89, 158, 200, 493, 824
FriOI GRGCYC 1 cut(s) 857
Fsp4HI GCNGC 6 cut(s) 298, 332, 479, 482, 485, 1135
FspBI CTAG 1 cut(s) 512
GlaI GCGC 1 cut(s) 690
GluI GCNGC 6 cut(s) 298, 332, 479, 482, 485, 1135
GsaI CCCAGC 1 cut(s) 470
GsuI CTGGAG 2 cut(s) 15, 713
HaeII RGCGCY 1 cut(s) 692
HaeIII GGCC 1 cut(s) 334
HapII CCGG 4 cut(s) 86, 310, 806, 888
HhaI GCGC 1 cut(s) 691
Hin1II CATG 4 cut(s) 383, 630, 835, 878
Hin6I GCGC 1 cut(s) 689
HinP1I GCGC 1 cut(s) 689
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 8 cut(s) 13, 133, 138, 376, 457, 527, 579, 750
HpaII CCGG 4 cut(s) 86, 310, 806, 888
HphI GGTGA 2 cut(s) 1022, 1166
Hpy166II GTNNAC 2 cut(s) 292, 668
Hpy188I TCNGA 8 cut(s) 52, 76, 271, 360, 496, 595, 762, 1076
Hpy188III TCNNGA 6 cut(s) 22, 32, 310, 640, 791, 875
Hpy8I GTNNAC 2 cut(s) 292, 668
HpyAV CCTTC 3 cut(s) 904, 944, 1024
HpyCH4III ACNGT 5 cut(s) 96, 316, 824, 829, 1010
HpyCH4IV ACGT 2 cut(s) 65, 305
HpyCH4V TGCA 3 cut(s) 393, 399, 1118
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 484, 1134
HpyF3I CTNAG 4 cut(s) 49, 143, 348, 569
HpySE526I ACGT 2 cut(s) 65, 305
Hsp92II CATG 4 cut(s) 383, 630, 835, 878
HspAI GCGC 1 cut(s) 689
Kpn2I TCCGGA 1 cut(s) 309
Kzo9I GATC 3 cut(s) 636, 769, 1156
LmnI GCTCC 5 cut(s) 50, 88, 215, 263, 565
Lsp1109I GCAGC 5 cut(s) 309, 490, 493, 496, 1146
LweI GCATC 1 cut(s) 1105
MaeI CTAG 1 cut(s) 512
MaeII ACGT 2 cut(s) 65, 305
MalI GATC 3 cut(s) 638, 771, 1158
MbiI CCGCTC 1 cut(s) 331
MboI GATC 3 cut(s) 636, 769, 1156
MboII GAAGA 4 cut(s) 67, 194, 988, 1039
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 3 cut(s) 374, 712, 857
MluCI AATT 6 cut(s) 223, 252, 324, 438, 558, 756
MlyI GAGTC 1 cut(s) 588
MmeI TCCRAC 1 cut(s) 819
MroI TCCGGA 1 cut(s) 309
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 6 cut(s) 321, 450, 546, 948, 975, 1061
MslI CAYNNNNRTG 1 cut(s) 806
MspI CCGG 4 cut(s) 86, 310, 806, 888
MspR9I CCNGG 1 cut(s) 806
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 169
MwoI GCNNNNNNNGC 3 cut(s) 164, 484, 1134
NciI CCSGG 1 cut(s) 806
NdeII GATC 3 cut(s) 636, 769, 1156
NlaIII CATG 4 cut(s) 383, 630, 835, 878
NlaIV GGNNCC 3 cut(s) 259, 431, 932
OliI CACNNNNGTG 1 cut(s) 806
PagI TCATGA 1 cut(s) 874
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 7 cut(s) 13, 133, 138, 376, 457, 527, 750
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 6 cut(s) 299, 333, 480, 483, 486, 1136
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
PpuMI RGGWCCY 1 cut(s) 923
Psp1406I AACGTT 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 923
PspFI CCCAGC 1 cut(s) 466
PspN4I GGNNCC 3 cut(s) 259, 431, 932
PspPI GGNCC 2 cut(s) 923, 930
PspPPI RGGWCCY 1 cut(s) 923
PstNI CAGNNNCTG 1 cut(s) 364
RsaI GTAC 3 cut(s) 412, 667, 826
RsaNI GTAC 3 cut(s) 411, 666, 825
RseI CAYNNNNRTG 1 cut(s) 806
SaqAI TTAA 6 cut(s) 321, 450, 546, 948, 975, 1061
SatI GCNGC 6 cut(s) 298, 332, 479, 482, 485, 1135
Sau3AI GATC 3 cut(s) 636, 769, 1156
Sau96I GGNCC 2 cut(s) 923, 930
SchI GAGTC 1 cut(s) 588
ScrFI CCNGG 1 cut(s) 806
SduI GDGCHC 3 cut(s) 374, 712, 857
SfaNI GCATC 1 cut(s) 1105
SinI GGWCC 2 cut(s) 923, 930
SmiMI CAYNNNNRTG 1 cut(s) 806
Sse9I AATT 6 cut(s) 223, 252, 324, 438, 558, 756
SsiI CCGC 5 cut(s) 119, 175, 331, 563, 1095
SspI AATATT 1 cut(s) 1090
SspMI CTAG 1 cut(s) 512
StyD4I CCNGG 1 cut(s) 804
StyI CCWWGG 3 cut(s) 123, 511, 926
TaaI ACNGT 5 cut(s) 96, 316, 824, 829, 1010
TaiI ACGT 2 cut(s) 68, 308
TaqI TCGA 4 cut(s) 99, 136, 374, 748
TasI AATT 6 cut(s) 223, 252, 324, 438, 558, 756
TatI WGTACW 1 cut(s) 665
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 7 cut(s) 13, 133, 138, 376, 457, 527, 750
Tru1I TTAA 6 cut(s) 321, 450, 546, 948, 975, 1061
Tru9I TTAA 6 cut(s) 321, 450, 546, 948, 975, 1061
TscAI CASTG 1 cut(s) 675
TseI GCWGC 5 cut(s) 297, 478, 481, 484, 1134
TspDTI ATGAA 6 cut(s) 178, 270, 368, 742, 863, 923
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 1 cut(s) 675
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 923, 930
XmaJI CCTAGG 1 cut(s) 511
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.