MD07G1058700.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000424
Physical Location & Seq
Reverse (-)
5472239 .. 5473355
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1058700.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGTCAGACTTCCCACCGGAGCTACTGTTCGACATCTTATCAAGGCTTCCGCCCAAGGATTTGATTCGATTCCTCTGTGTTTCCAAAGCTTGGAATGCCATCATCCACCACCACCACTTCATCAAGGCTCATCTTCAACGCTCCATCCAAACCAATTCCTTTCGCACCATTTTAGTCAGGTCAATTGGCTCCCCCTCATCAGATTTTTTTTCATCGGCTTTCGACGGCAGCGAAACGTTCTGGACACCCGTTAAAATTGAGCGGCCGTTGAAATCCCCTGAGAGGTATCAGATACTGGGGTGCTCGATTCATGGAGTGGTTTGCATTTGCAATAGACTCCGTACGAATGTCGCTTTGTGGAACCCGTCAATTCAAAAGTTTAAGACGATTCCCCTCCCAGCCATTGAGCAGCAGCAGCCATCATCAGCTTTACATATATCCCTAGGGTTCGGGTATGATTCAGTTAGTGATGACTTTAAACTTTTGCGAATTGCGGAGCTTGTTAATAGTAAAGGAGTCTTTGTGAGTTCTGAAGTTAGTATTTACAGCCTCAAATTGAACTCATGGAAAAGGATCAAGAACTTGCCTCGCAATGATTTTAGTACACTGAATGTGTATGACACGGCGCTGGTGTTTTCAAATGGTGCTGAATTTGACACCCCGGTGGATGAGGATTACAGTACCGTCATGGAGTTGGAGGTTTTAGGGGGCTCTCTATGTGTTTCTGTTCATGATTGGGACACCGGAAATGATGTTTGGATTATGAAGGATTTTGGAGGACCTTGGACCCTTCTGTATTCTATTAAAAAGGAAACTATGACTTGGTTGCTTAACTATTGCCCACCTTTGGTCTTCGCAAAGAACGGTGAAATAGTTCTTTTGAAGAAGGACGAGGAAGCATTTGTTTGGTTTGATTTAAAGGGAAAAATCGGATACCAAGATAATATTTGCGGTCTGCCACTTCGCTTTGATGCAAAGATTTGCGAGGGCAGCCTTTGTCTTATTGATGGTGATCCCGTGATTGGTGGGAGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

346

Amino Acids

38.99

Weight (kDa)

6.08

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 40 2.4e-11 F-box domain
F-box-like PF12937 2 - 38 9.6e-10 F-box-like
FBA_3 PF08268 91 - 195 3.8e-10 F-box associated beta propeller domain
FBA_1 PF07734 105 - 199 5e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AccBSI CCGCTC 1 cut(s) 262
AciI CCGC 4 cut(s) 50, 262, 494, 951
AclI AACGTT 1 cut(s) 236
AclWI GGATC 2 cut(s) 581, 1007
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 3 cut(s) 343, 604, 682
AfiI CCNNNNNNNGG 4 cut(s) 90, 282, 847, 1022
AgsI TTSAA 6 cut(s) 137, 271, 374, 559, 639, 883
AjuI GAANNNNNNNTTGG 2 cut(s) 739, 771
AleI CACNNNNGTG 1 cut(s) 662
AloI GAACNNNNNNTCC 2 cut(s) 11, 43
AluBI AGCT 4 cut(s) 22, 89, 428, 499
AluI AGCT 4 cut(s) 22, 89, 428, 499
Alw21I GWGCWC 1 cut(s) 305
AlwI GGATC 2 cut(s) 581, 1007
AlwNI CAGNNNCTG 1 cut(s) 295
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 5 cut(s) 228, 409, 412, 415, 990
ApoI RAATTY 1 cut(s) 650
Asp700I GAANNNNTTC 1 cut(s) 873
AspA2I CCTAGG 1 cut(s) 442
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 2 cut(s) 779, 786
AsuC2I CCSGG 1 cut(s) 662
AsuHPI GGTGA 2 cut(s) 878, 1022
AvaII GGWCC 2 cut(s) 779, 786
AvrII CCTAGG 1 cut(s) 442
BaeI ACNNNNGTAYC 2 cut(s) 284, 317
BanII GRGCYC 1 cut(s) 713
BbsI GAAGAC 1 cut(s) 844
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 5 cut(s) 240, 421, 424, 427, 1002
BccI CCATC 4 cut(s) 107, 152, 427, 1001
BceAI ACGGC 3 cut(s) 241, 250, 639
BciVI GTATCC 1 cut(s) 926
BcnI CCSGG 1 cut(s) 662
BfaI CTAG 1 cut(s) 443
BfoI RGCGCY 1 cut(s) 629
BfuI GTATCC 1 cut(s) 926
BisI GCNGC 6 cut(s) 229, 263, 410, 413, 416, 991
BlnI CCTAGG 1 cut(s) 442
BlsI GCNGC 6 cut(s) 230, 264, 411, 414, 417, 992
Bme1390I CCNGG 1 cut(s) 662
Bme18I GGWCC 2 cut(s) 779, 786
BmgT120I GGNCC 2 cut(s) 779, 786
BmiI GGNNCC 3 cut(s) 190, 362, 788
BmrFI CCNGG 1 cut(s) 662
BmrI ACTGGG 1 cut(s) 305
BmsI GCATC 1 cut(s) 961
BmuI ACTGGG 1 cut(s) 305
BpiI GAAGAC 1 cut(s) 844
BpuMI CCSGG 1 cut(s) 662
BsaBI GATNNNNATC 1 cut(s) 1011
BsaJI CCNNGG 4 cut(s) 54, 442, 660, 782
BsaWI WCCGGW 2 cut(s) 16, 743
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 507, 537
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 282, 847, 1022
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 598
Bse8I GATNNNNATC 1 cut(s) 1011
BseDI CCNNGG 4 cut(s) 54, 442, 660, 782
BseGI GGATG 3 cut(s) 102, 144, 673
BseJI GATNNNNATC 1 cut(s) 1011
BseLI CCNNNNNNNGG 4 cut(s) 90, 282, 847, 1022
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 300
BseX3I CGGCCG 1 cut(s) 263
BseXI GCAGC 5 cut(s) 240, 421, 424, 427, 1002
BseYI CCCAGC 1 cut(s) 397
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 3 cut(s) 17, 662, 744
BsiWI CGTACG 1 cut(s) 341
BslFI GGGAC 1 cut(s) 752
BslI CCNNNNNNNGG 4 cut(s) 90, 282, 847, 1022
BsmFI GGGAC 1 cut(s) 752
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 1 cut(s) 265
Bsp1286I GDGCHC 2 cut(s) 305, 713
Bsp143I GATC 2 cut(s) 573, 1012
BspACI CCGC 4 cut(s) 50, 262, 494, 951
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 271
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 3 cut(s) 190, 362, 788
BspPI GGATC 2 cut(s) 581, 1007
BsrBI CCGCTC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 598
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 4 cut(s) 54, 442, 660, 782
BssMI GATC 2 cut(s) 573, 1012
BssT1I CCWWGG 3 cut(s) 54, 442, 782
Bst4CI ACNGT 4 cut(s) 27, 680, 685, 866
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 3 cut(s) 102, 144, 673
BstH2I RGCGCY 1 cut(s) 629
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 2 cut(s) 576, 1015
BstMBI GATC 2 cut(s) 573, 1012
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 3 cut(s) 95, 415, 990
BstSCI CCNGG 1 cut(s) 660
BstV1I GCAGC 5 cut(s) 240, 421, 424, 427, 1002
BstV2I GAAGAC 1 cut(s) 844
BstZI CGGCCG 1 cut(s) 263
BsuI GTATCC 1 cut(s) 926
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 3 cut(s) 102, 144, 673
BtsIMutI CAGTG 1 cut(s) 605
CaiI CAGNNNCTG 1 cut(s) 295
CciI TCATGA 1 cut(s) 730
CfoI GCGC 1 cut(s) 628
Cfr13I GGNCC 2 cut(s) 779, 786
Csp6I GTAC 3 cut(s) 342, 603, 681
CviAII CATG 4 cut(s) 311, 564, 688, 731
CviQI GTAC 3 cut(s) 342, 603, 681
DdeI CTNAG 1 cut(s) 279
DpnI GATC 2 cut(s) 575, 1014
DpnII GATC 2 cut(s) 573, 1012
DraI TTTAAA 2 cut(s) 478, 918
EaeI YGGCCR 1 cut(s) 263
EagI CGGCCG 1 cut(s) 263
EciI GGCGGA 1 cut(s) 39
EclXI CGGCCG 1 cut(s) 263
Eco130I CCWWGG 3 cut(s) 54, 442, 782
Eco24I GRGCYC 1 cut(s) 713
Eco47I GGWCC 2 cut(s) 779, 786
Eco52I CGGCCG 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 779
EcoT14I CCWWGG 3 cut(s) 54, 442, 782
EcoT38I GRGCYC 1 cut(s) 713
ErhI CCWWGG 3 cut(s) 54, 442, 782
FaeI CATG 4 cut(s) 314, 567, 691, 734
FaqI GGGAC 1 cut(s) 752
FatI CATG 4 cut(s) 310, 563, 687, 730
Fnu4HI GCNGC 6 cut(s) 229, 263, 410, 413, 416, 991
FokI GGATG 3 cut(s) 89, 131, 680
FriOI GRGCYC 1 cut(s) 713
Fsp4HI GCNGC 6 cut(s) 229, 263, 410, 413, 416, 991
FspBI CTAG 1 cut(s) 443
GlaI GCGC 1 cut(s) 627
GluI GCNGC 6 cut(s) 229, 263, 410, 413, 416, 991
GsaI CCCAGC 1 cut(s) 401
HaeII RGCGCY 1 cut(s) 629
HaeIII GGCC 1 cut(s) 265
HapII CCGG 3 cut(s) 17, 662, 744
HhaI GCGC 1 cut(s) 628
Hin1II CATG 4 cut(s) 314, 567, 691, 734
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 7 cut(s) 64, 69, 307, 336, 388, 458, 516
HpaII CCGG 3 cut(s) 17, 662, 744
HphI GGTGA 2 cut(s) 878, 1022
Hpy166II GTNNAC 1 cut(s) 605
Hpy188I TCNGA 5 cut(s) 7, 202, 291, 532, 932
Hpy188III TCNNGA 3 cut(s) 241, 577, 731
Hpy8I GTNNAC 1 cut(s) 605
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 760, 800, 880
HpyCH4III ACNGT 4 cut(s) 27, 680, 685, 866
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 3 cut(s) 324, 330, 974
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 415, 990
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 4 cut(s) 314, 567, 691, 734
HspAI GCGC 1 cut(s) 626
Kzo9I GATC 2 cut(s) 573, 1012
LmnI GCTCC 4 cut(s) 19, 146, 194, 496
LpnPI CCDG 9 cut(s) 30, 163, 226, 281, 291, 411, 614, 675, 757
Lsp1109I GCAGC 5 cut(s) 240, 421, 424, 427, 1002
LweI GCATC 1 cut(s) 961
MaeI CTAG 1 cut(s) 443
MaeII ACGT 1 cut(s) 236
MalI GATC 2 cut(s) 575, 1014
MbiI CCGCTC 1 cut(s) 262
MboI GATC 2 cut(s) 573, 1012
MboII GAAGA 3 cut(s) 125, 844, 895
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 2 cut(s) 305, 713
MluCI AATT 7 cut(s) 154, 183, 255, 369, 489, 554, 650
MlyI GAGTC 2 cut(s) 330, 525
MmeI TCCRAC 1 cut(s) 675
MroXI GAANNNNTTC 1 cut(s) 873
MseI TTAA 7 cut(s) 252, 381, 477, 504, 804, 831, 917
MslI CAYNNNNRTG 1 cut(s) 662
MspI CCGG 3 cut(s) 17, 662, 744
MspR9I CCNGG 1 cut(s) 662
MunI CAATTG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 100
MwoI GCNNNNNNNGC 3 cut(s) 95, 415, 990
NciI CCSGG 1 cut(s) 662
NdeII GATC 2 cut(s) 573, 1012
NlaIII CATG 4 cut(s) 314, 567, 691, 734
NlaIV GGNNCC 3 cut(s) 190, 362, 788
OliI CACNNNNGTG 1 cut(s) 662
PagI TCATGA 1 cut(s) 730
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 873
PfeI GAWTC 5 cut(s) 64, 69, 307, 388, 458
Pfl23II CGTACG 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 6 cut(s) 230, 264, 411, 414, 417, 992
PleI GAGTC 2 cut(s) 330, 524
PpsI GAGTC 2 cut(s) 330, 524
PpuMI RGGWCCY 1 cut(s) 779
Psp1406I AACGTT 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 779
PspFI CCCAGC 1 cut(s) 397
PspLI CGTACG 1 cut(s) 341
PspN4I GGNNCC 3 cut(s) 190, 362, 788
PspPI GGNCC 2 cut(s) 779, 786
PspPPI RGGWCCY 1 cut(s) 779
PstNI CAGNNNCTG 1 cut(s) 295
RsaI GTAC 3 cut(s) 343, 604, 682
RsaNI GTAC 3 cut(s) 342, 603, 681
RseI CAYNNNNRTG 1 cut(s) 662
SaqAI TTAA 7 cut(s) 252, 381, 477, 504, 804, 831, 917
SatI GCNGC 6 cut(s) 229, 263, 410, 413, 416, 991
Sau3AI GATC 2 cut(s) 573, 1012
Sau96I GGNCC 2 cut(s) 779, 786
SchI GAGTC 2 cut(s) 330, 525
ScrFI CCNGG 1 cut(s) 662
SduI GDGCHC 2 cut(s) 305, 713
SfaNI GCATC 1 cut(s) 961
SinI GGWCC 2 cut(s) 779, 786
SmiMI CAYNNNNRTG 1 cut(s) 662
Sse9I AATT 7 cut(s) 154, 183, 255, 369, 489, 554, 650
SsiI CCGC 4 cut(s) 50, 262, 494, 951
SspI AATATT 1 cut(s) 946
SspMI CTAG 1 cut(s) 443
StyD4I CCNGG 1 cut(s) 660
StyI CCWWGG 3 cut(s) 54, 442, 782
TaaI ACNGT 4 cut(s) 27, 680, 685, 866
TaiI ACGT 1 cut(s) 239
TaqI TCGA 4 cut(s) 30, 67, 222, 305
TasI AATT 7 cut(s) 154, 183, 255, 369, 489, 554, 650
TatI WGTACW 1 cut(s) 602
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 5 cut(s) 64, 69, 307, 388, 458
Tru1I TTAA 7 cut(s) 252, 381, 477, 504, 804, 831, 917
Tru9I TTAA 7 cut(s) 252, 381, 477, 504, 804, 831, 917
TscAI CASTG 1 cut(s) 612
TseI GCWGC 5 cut(s) 228, 409, 412, 415, 990
TspDTI ATGAA 5 cut(s) 109, 201, 299, 719, 779
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 612
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 2 cut(s) 779, 786
XapI RAATTY 1 cut(s) 650
XmaJI CCTAGG 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 873
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.