Rmu_co8519977.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8519977.1
OG0000424
Physical Location & Seq
Reverse (-)
952 .. 1791
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8519977.1_g000001.1.cds

Sequence Viewer

Length: 840 bp
atggaagaaaggaaaagtagaagacagattttgctcgctcgggccatttgccatctctctctccagagagttctctcacttgtgtatctctattcgacggacaaattcagcaatgctcgcaagattgtgcaactcttggcacaccctgagagagtgacaaaatttgtgggccgctgtaatggtttgctactcctgcataatcgatatcacgatcaagacctggcaatttggaatccgacgattcagaaattcaagagaattccctttgcacccattgagttgccggctgggactcaaaggacacatacaatgtatggttttggatatgatcaatccagtactgactacaaaattgttagaattgtggaagttgtaaatggtgaaaggggttcggaagtgaagctttacagtctgaaatccatcttatggaataagattcaaagcttcccttacacaaggaattcatctcatttttatgcacctgccgttcctctaaatggtgctctacattggctcgtcacaaataattcacaatcccagagtgtaagagttgttgctcttgatctctcaaaagaaactttcaacaagttttctaccccgtttgctgatgtcgaaggcggaattggtttggaggtgttgggaggtagtctctgcatttgtcttaatcatttcaaaaccagtaatgaagtctggaaaatgaaggaatatggagtggctgaatcttgggttcatttctatattgttgagtggaaggttgtgaaaaaacgtttgagtgctgcacaactttggtcttatcaaagactggtgaaagggttcttttgcataacgactctgatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

279

Amino Acids

32.12

Weight (kDa)

9.67

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 490
Acc36I ACCTGC 1 cut(s) 490
AccB7I CCANNNNNTGG 1 cut(s) 426
AciI CCGC 2 cut(s) 172, 618
AclI AACGTT 1 cut(s) 766
AcsI RAATTY 5 cut(s) 104, 161, 248, 258, 460
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 2 cut(s) 426, 497
AgsI TTSAA 4 cut(s) 253, 440, 583, 673
AjnI CCWGG 1 cut(s) 219
AjuI GAANNNNNNNTTGG 2 cut(s) 606, 638
AluBI AGCT 2 cut(s) 403, 444
AluI AGCT 2 cut(s) 403, 444
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 1 cut(s) 653
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 2 cut(s) 42, 169
ApeKI GCWGC 1 cut(s) 776
ApoI RAATTY 5 cut(s) 104, 161, 248, 258, 460
Asp700I GAANNNNTTC 1 cut(s) 812
AspS9I GGNCC 2 cut(s) 42, 169
AsuHPI GGTGA 2 cut(s) 392, 817
AvaI CYCGRG 1 cut(s) 39
BaeI ACNNNNGTAYC 2 cut(s) 68, 101
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 1 cut(s) 763
BccI CCATC 2 cut(s) 60, 428
BceAI ACGGC 1 cut(s) 470
BciT130I CCWGG 1 cut(s) 221
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 653
BfuAI ACCTGC 1 cut(s) 490
BisI GCNGC 2 cut(s) 172, 777
BlsI GCNGC 2 cut(s) 173, 778
BmcAI AGTACT 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 221
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 2 cut(s) 42, 169
BmrFI CCNGG 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 28
BplI GAGNNNNNCTC 2 cut(s) 633, 665
BpmI CTGGAG 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 426, 497
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 3 cut(s) 336, 678, 807
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 221
BseCI ATCGAT 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 426, 497
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 3 cut(s) 336, 678, 807
BseXI GCAGC 1 cut(s) 763
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 762
BshFI GGCC 2 cut(s) 44, 171
BshVI ATCGAT 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 426, 497
BsmAI GTCTC 1 cut(s) 653
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 2 cut(s) 44, 171
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 3 cut(s) 211, 328, 562
BspACI CCGC 2 cut(s) 172, 618
BspANI GGCC 2 cut(s) 44, 171
BspCNI CTCAG 1 cut(s) 139
BspDI ATCGAT 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 490
BsrDI GCAATG 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 3 cut(s) 336, 678, 807
BssAI RCCGGY 1 cut(s) 283
BssMI GATC 3 cut(s) 211, 328, 562
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 410
BstC8I GCNNGC 3 cut(s) 36, 118, 285
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 3 cut(s) 214, 331, 565
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 3 cut(s) 211, 328, 562
BstMWI GCNNNNNNNGC 2 cut(s) 117, 193
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 763
BstV2I GAAGAC 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 202
BsuRI GGCC 2 cut(s) 44, 171
BsuTUI ATCGAT 1 cut(s) 202
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 3 cut(s) 36, 118, 285
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 42, 169
ClaI ATCGAT 1 cut(s) 202
Csp6I GTAC 1 cut(s) 339
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviJI RGCY 7 cut(s) 44, 171, 287, 403, 444, 514, 716
CviKI_1 RGCY 7 cut(s) 44, 171, 287, 403, 444, 514, 716
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 1 cut(s) 147
DpnI GATC 3 cut(s) 213, 330, 564
DpnII GATC 3 cut(s) 211, 328, 562
EciI GGCGGA 1 cut(s) 633
Eco32I GATATC 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 39
EcoRI GAATTC 2 cut(s) 258, 460
EcoRII CCWGG 1 cut(s) 219
EcoRV GATATC 1 cut(s) 206
FaiI YATR 9 cut(s) 198, 306, 315, 327, 427, 477, 708, 738, 824
FalI AAGNNNNNCTT 4 cut(s) 387, 419, 433, 465
FaqI GGGAC 1 cut(s) 304
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 172, 777
Fsp4HI GCNGC 2 cut(s) 172, 777
GluI GCNGC 2 cut(s) 172, 777
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 44, 171
HapII CCGG 1 cut(s) 284
HindIII AAGCTT 2 cut(s) 401, 442
HinfI GANTC 6 cut(s) 232, 241, 292, 436, 719, 829
HpaII CCGG 1 cut(s) 284
HphI GGTGA 2 cut(s) 392, 817
Hpy188I TCNGA 5 cut(s) 237, 246, 394, 414, 834
Hpy188III TCNNGA 6 cut(s) 64, 209, 215, 253, 560, 691
Hpy99I CGWCG 2 cut(s) 100, 241
HpyAV CCTTC 3 cut(s) 608, 694, 745
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 1 cut(s) 766
HpyCH4V TGCA 7 cut(s) 130, 196, 269, 479, 654, 779, 822
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 193
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 766
KroI GCCGGC 1 cut(s) 283
KroNI GCCGGC 1 cut(s) 285
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 3 cut(s) 211, 328, 562
Lsp1109I GCAGC 1 cut(s) 763
MaeII ACGT 1 cut(s) 766
MaeIII GTNAC 2 cut(s) 154, 517
MalI GATC 3 cut(s) 213, 330, 564
MboI GATC 3 cut(s) 211, 328, 562
MboII GAAGA 2 cut(s) 17, 33
MhlI GDGCHC 1 cut(s) 505
MlyI GAGTC 2 cut(s) 286, 823
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 3 cut(s) 501, 625, 635
MroNI GCCGGC 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 812
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 117, 193
NaeI GCCGGC 1 cut(s) 285
NdeII GATC 3 cut(s) 211, 328, 562
NgoMIV GCCGGC 1 cut(s) 283
NmuCI GTSAC 2 cut(s) 154, 517
PaqCI CACCTGC 1 cut(s) 490
PdiI GCCGGC 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 812
PfeI GAWTC 4 cut(s) 232, 241, 436, 719
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 2 cut(s) 173, 778
PleI GAGTC 2 cut(s) 286, 823
PpsI GAGTC 2 cut(s) 286, 823
Psp1406I AACGTT 1 cut(s) 766
Psp6I CCWGG 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 1 cut(s) 219
PspPI GGNCC 2 cut(s) 42, 169
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 2 cut(s) 172, 777
Sau3AI GATC 3 cut(s) 211, 328, 562
Sau96I GGNCC 2 cut(s) 42, 169
ScaI AGTACT 1 cut(s) 340
SchI GAGTC 2 cut(s) 286, 823
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 505
SetI ASST 8 cut(s) 222, 405, 446, 484, 636, 646, 756, 769
SmiMI CAYNNNNRTG 1 cut(s) 474
SsiI CCGC 2 cut(s) 172, 618
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 1 cut(s) 769
TaqI TCGA 3 cut(s) 95, 202, 612
TatI WGTACW 1 cut(s) 338
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 4 cut(s) 232, 241, 436, 719
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TseFI GTSAC 2 cut(s) 154, 517
TseI GCWGC 1 cut(s) 776
Tsp45I GTSAC 2 cut(s) 154, 517
TspDTI ATGAA 4 cut(s) 453, 699, 713, 719
TspGWI ACGGA 1 cut(s) 113
Van91I CCANNNNNTGG 1 cut(s) 426
XapI RAATTY 5 cut(s) 104, 161, 248, 258, 460
XmnI GAANNNNTTC 1 cut(s) 812
ZrmI AGTACT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.