RchiOBHm_Chr7g0180101

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
2141566 .. 2142078
513 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16057

Sequence Viewer

Length: 513 bp
ATGGGGCAGTTTAAGGATCCGAGTGGTGTTGTTACAAGCTCGGAAGGTCAGGTTTATAGTCTAAAATTGCACTCATGGAAAAGGGTCCAAGACTTGCCTGCTCATCTTAATTTTGCCTCAAATGGGGTTTGTCTGGATAGTTCTTTACATTGGTTGATGAGGTTAGGTGACAAAGGTGGAGGACCAATGGCAGTTCTAACCTTTGATCTCGCAAGTGAAGAGTGCCACTGGTTTTCTGCCCCAGATCATTATAACAGTAAGCATTTGAGTATAAACTACTTGGATTTGCATGTTATGGGAGGGTTCTTATGCTTTTGTTTAGAATCTAGTGTTCTCTGGGAGACTTGGATTTTGAAGGAATATGGAGTTACCAAATCTTGGACCAAGCTTTGTTGTTACGACAGGCATAGGTATTGCAGCAATCCTCTGATCTTTTCAAAGTGTGGTAAAAAGCGTTTTTTTTTTTTTTTTTGCAAAATATTCGGGATTTTATTGGTATGGGGTGGAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

19.48

Weight (kDa)

8.07

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 12 - 130 2.7e-06 F-box associated beta propeller domain
FBA_1 PF07734 14 - 132 5.5e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 252
AccB7I CCANNNNNTGG 1 cut(s) 378
AclWI GGATC 2 cut(s) 11, 24
AfiI CCNNNNNNNGG 2 cut(s) 123, 378
AgsI TTSAA 2 cut(s) 355, 438
AluBI AGCT 2 cut(s) 39, 388
AluI AGCT 2 cut(s) 39, 388
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 2 cut(s) 11, 24
ApeKI GCWGC 1 cut(s) 417
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AspS9I GGNCC 3 cut(s) 85, 182, 381
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 3 cut(s) 85, 182, 381
BamHI GGATCC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 429
BcgI CGANNNNNNTGC 2 cut(s) 463, 497
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 1 cut(s) 327
BisI GCNGC 1 cut(s) 418
BlsI GCNGC 1 cut(s) 419
Bme18I GGWCC 3 cut(s) 85, 182, 381
BmgT120I GGNCC 3 cut(s) 85, 182, 381
BmiI GGNNCC 2 cut(s) 18, 86
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 378
Bse1I ACTGG 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 123, 378
BseNI ACTGG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 429
BslI CCNNNNNNNGG 2 cut(s) 123, 378
BsmAI GTCTC 1 cut(s) 335
Bsp143I GATC 4 cut(s) 16, 205, 244, 429
BspLI GGNNCC 2 cut(s) 18, 86
BspPI GGATC 2 cut(s) 11, 24
BsrI ACTGG 1 cut(s) 233
BssMI GATC 4 cut(s) 16, 205, 244, 429
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 99
BstKTI GATC 4 cut(s) 19, 208, 247, 432
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 4 cut(s) 16, 205, 244, 429
BstNSI RCATGY 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 429
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 3 cut(s) 85, 182, 381
CviAII CATG 2 cut(s) 75, 290
CviJI RGCY 2 cut(s) 39, 388
CviKI_1 RGCY 2 cut(s) 39, 388
DpnI GATC 4 cut(s) 18, 207, 246, 431
DpnII GATC 4 cut(s) 16, 205, 244, 429
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco47I GGWCC 3 cut(s) 85, 182, 381
FaeI CATG 2 cut(s) 78, 293
FatI CATG 2 cut(s) 74, 289
Fnu4HI GCNGC 1 cut(s) 418
Fsp4HI GCNGC 1 cut(s) 418
FspBI CTAG 1 cut(s) 327
GluI GCNGC 1 cut(s) 418
Hin1II CATG 2 cut(s) 78, 293
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 1 cut(s) 323
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 3 cut(s) 21, 43, 429
Hpy188III TCNNGA 2 cut(s) 134, 484
HpyAV CCTTC 2 cut(s) 38, 349
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 4 cut(s) 70, 289, 417, 474
Hsp92II CATG 2 cut(s) 78, 293
Kzo9I GATC 4 cut(s) 16, 205, 244, 429
LpnPI CCDG 7 cut(s) 35, 111, 119, 214, 255, 322, 388
Lsp1109I GCAGC 1 cut(s) 429
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 4 cut(s) 31, 167, 367, 395
MalI GATC 4 cut(s) 18, 207, 246, 431
MboI GATC 4 cut(s) 16, 205, 244, 429
MboII GAAGA 1 cut(s) 230
MflI RGATCY 1 cut(s) 16
MluCI AATT 2 cut(s) 65, 109
MnlI CCTC 5 cut(s) 127, 153, 173, 293, 435
MseI TTAA 2 cut(s) 12, 108
NdeII GATC 4 cut(s) 16, 205, 244, 429
NlaIII CATG 2 cut(s) 78, 293
NlaIV GGNNCC 2 cut(s) 18, 86
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 1 cut(s) 293
PfeI GAWTC 1 cut(s) 323
PflMI CCANNNNNTGG 1 cut(s) 378
PkrI GCNGC 1 cut(s) 419
PsiI TTATAA 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 18, 86
PspPI GGNCC 3 cut(s) 85, 182, 381
PsuI RGATCY 1 cut(s) 16
SaqAI TTAA 2 cut(s) 12, 108
SatI GCNGC 1 cut(s) 418
Sau3AI GATC 4 cut(s) 16, 205, 244, 429
Sau96I GGNCC 3 cut(s) 85, 182, 381
SetI ASST 9 cut(s) 41, 49, 54, 164, 169, 178, 203, 390, 413
SinI GGWCC 3 cut(s) 85, 182, 381
Sse9I AATT 2 cut(s) 65, 109
SspI AATATT 1 cut(s) 480
SspMI CTAG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 257
TasI AATT 2 cut(s) 65, 109
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 12, 108
Tru9I TTAA 2 cut(s) 12, 108
TscAI CASTG 1 cut(s) 233
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 1 cut(s) 417
Tsp45I GTSAC 1 cut(s) 167
TspRI CASTG 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 378
VpaK11BI GGWCC 3 cut(s) 85, 182, 381
XceI RCATGY 1 cut(s) 293
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.