Prupe.1G025300_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000424
Physical Location & Seq
Reverse (-)
1748034 .. 1748954
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G025300.1

Sequence Viewer

Length: 921 bp
ATGTTAAACATCCCACGGGAGCTAATCTTTGACATCCTTTCACGGCTCCAACTGAAGGATTTGATCCGATATATGTGTGTTTCCAGAGCTTGGCATGCTTTCATCCACAACCAAAACTTCATGAAACTGCATCTCGAACTCTCCATCAAAACCAACTCTACTCGCACCATTTTAATCCAGTCACAGTCAGATCCATCATACATGGGTTCATTGCCTTTTGACAGCGATGAGACGCTAGGGAAATCCAAAGTTGTGCACCCGATGCCTCCGTGGAAACACGGAGGAAGATATACTCTAATCCTGGGCTACTCCATTGGTCTGCTTTTTATATGCAACTATGATCTCAATAAGGATTTTACTTTGTGGAACCCGTCAATTCAAAAGTTGAAGAAGCTTCCCTTCACAACCCTTGAGCCGCATCCATCACCAGGTTTAGAGATATCCCGTTCCCATATTACAAATGGATTCGGGTACGATTCAGCCAATGATGACTATAAACTCCTGGGGATTTTGGAGCTTGCTAATAGCGACGATGTTATCGTGAGTTCTCAAGTCCATGTTTATAGCCTAAAATCCCACTCATGGAAAAGGATCCAAAACACGCCTTGCGATGGTTATAGTTTTTCAGAAGATTCAGATAGCATCGTGTTTCTCAATGGTGCTCTAAGTTGGCTCATGTCTAAAGAGTCAGATGATGCAGATAAGTACATGATCGTAACCCTTGATCTTGCCAGTGAGAAATGTCGGGAGTTTCCCATCCCAGTGGACAGGATTAACATTGACATTTCTAGCCTGGATTTGGAGGTCTTAGGGGACTATCTGTGTATTTCTGTTAATTGTTTCTGGTGTCGAAGTGAGGCTTGGATTATGAAGGAATATGGGGTGACAGAATCTTGGAGCCTTCCTTATTCTATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

307

Amino Acids

35.05

Weight (kDa)

5.38

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AciI CCGC 1 cut(s) 416
AclWI GGATC 4 cut(s) 58, 185, 586, 599
AcuI CTGAAG 1 cut(s) 74
AfaI GTAC 2 cut(s) 473, 707
AfiI CCNNNNNNNGG 6 cut(s) 55, 90, 428, 582, 611, 799
AgsI TTSAA 3 cut(s) 380, 388, 917
AjnI CCWGG 4 cut(s) 300, 427, 501, 792
AjuI GAANNNNNNNTTGG 2 cut(s) 844, 876
AluBI AGCT 4 cut(s) 22, 89, 394, 517
AluI AGCT 4 cut(s) 22, 89, 394, 517
Alw21I GWGCWC 2 cut(s) 258, 664
Alw26I GTCTC 1 cut(s) 224
Alw44I GTGCAC 1 cut(s) 254
AlwI GGATC 4 cut(s) 58, 185, 586, 599
ApaLI GTGCAC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 417, 895
BaeGI GKGCMC 1 cut(s) 258
BamHI GGATCC 1 cut(s) 591
Bbv12I GWGCWC 2 cut(s) 258, 664
BccI CCATC 5 cut(s) 152, 202, 430, 605, 764
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 4 cut(s) 302, 429, 503, 794
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 2 cut(s) 236, 789
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme1390I CCNGG 4 cut(s) 302, 429, 503, 794
BmiI GGNNCC 4 cut(s) 47, 368, 593, 899
BmrFI CCNGG 4 cut(s) 302, 429, 503, 794
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 5 cut(s) 139, 252, 427, 651, 685
BmuI ACTGGG 1 cut(s) 755
BpuEI CTTGAG 2 cut(s) 431, 534
BsaJI CCNNGG 4 cut(s) 14, 269, 301, 502
Bsc4I CCNNNNNNNGG 6 cut(s) 55, 90, 428, 582, 611, 799
Bse1I ACTGG 3 cut(s) 178, 732, 761
Bse3DI GCAATG 1 cut(s) 209
BseBI CCWGG 4 cut(s) 302, 429, 503, 794
BseDI CCNNGG 4 cut(s) 14, 269, 301, 502
BseGI GGATG 5 cut(s) 9, 33, 102, 418, 756
BseLI CCNNNNNNNGG 6 cut(s) 55, 90, 428, 582, 611, 799
BseMI GCAATG 1 cut(s) 209
BseNI ACTGG 3 cut(s) 178, 732, 761
BseSI GKGCMC 1 cut(s) 258
BsiHKAI GWGCWC 2 cut(s) 258, 664
BslFI GGGAC 1 cut(s) 827
BslI CCNNNNNNNGG 6 cut(s) 55, 90, 428, 582, 611, 799
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 827
Bsp1286I GDGCHC 2 cut(s) 258, 664
Bsp143I GATC 6 cut(s) 63, 190, 340, 591, 711, 724
BspACI CCGC 1 cut(s) 416
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 4 cut(s) 47, 368, 593, 899
BspPI GGATC 4 cut(s) 58, 185, 586, 599
BsrDI GCAATG 1 cut(s) 209
BsrI ACTGG 3 cut(s) 178, 732, 761
BssECI CCNNGG 4 cut(s) 14, 269, 301, 502
BssMI GATC 6 cut(s) 63, 190, 340, 591, 711, 724
Bst2UI CCWGG 4 cut(s) 302, 429, 503, 794
Bst4CI ACNGT 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 96, 519
BstDEI CTNAG 2 cut(s) 665, 808
BstDSI CCRYGG 2 cut(s) 14, 269
BstF5I GGATG 5 cut(s) 9, 33, 102, 418, 756
BstKTI GATC 6 cut(s) 66, 193, 343, 594, 714, 727
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 6 cut(s) 63, 190, 340, 591, 711, 724
BstMWI GCNNNNNNNGC 2 cut(s) 95, 262
BstNI CCWGG 4 cut(s) 302, 429, 503, 794
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 4 cut(s) 300, 427, 501, 792
BstSLI GKGCMC 1 cut(s) 258
BstX2I RGATCY 2 cut(s) 190, 591
BstXI CCANNNNNNTGG 1 cut(s) 763
BstYI RGATCY 2 cut(s) 190, 591
BtgI CCRYGG 2 cut(s) 14, 269
BtgZI GCGATG 2 cut(s) 240, 624
BtsCI GGATG 5 cut(s) 9, 33, 102, 418, 756
BtsIMutI CAGTG 2 cut(s) 739, 768
Cac8I GCNNGC 2 cut(s) 96, 519
CciI TCATGA 1 cut(s) 120
CseI GACGC 1 cut(s) 241
CsiI ACCWGGT 1 cut(s) 427
Csp6I GTAC 2 cut(s) 472, 706
CviAII CATG 7 cut(s) 95, 121, 202, 557, 582, 676, 709
CviQI GTAC 2 cut(s) 472, 706
DdeI CTNAG 2 cut(s) 665, 808
DpnI GATC 6 cut(s) 65, 192, 342, 593, 713, 726
DpnII GATC 6 cut(s) 63, 190, 340, 591, 711, 724
Eco32I GATATC 1 cut(s) 441
Eco57I CTGAAG 1 cut(s) 74
EcoRII CCWGG 4 cut(s) 300, 427, 501, 792
EcoRV GATATC 1 cut(s) 441
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 7 cut(s) 98, 124, 205, 560, 585, 679, 712
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 844, 876
FaqI GGGAC 1 cut(s) 827
FatI CATG 7 cut(s) 94, 120, 201, 556, 581, 675, 708
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 4 cut(s) 20, 89, 405, 743
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 2 cut(s) 236, 789
GluI GCNGC 1 cut(s) 416
HgaI GACGC 1 cut(s) 241
Hin1II CATG 7 cut(s) 98, 124, 205, 560, 585, 679, 712
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 5 cut(s) 465, 476, 632, 686, 890
HphI GGTGA 2 cut(s) 417, 895
Hpy166II GTNNAC 2 cut(s) 256, 766
Hpy188I TCNGA 5 cut(s) 68, 190, 628, 637, 691
Hpy188III TCNNGA 5 cut(s) 84, 121, 134, 541, 746
Hpy8I GTNNAC 2 cut(s) 256, 766
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 4 cut(s) 49, 409, 865, 911
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 4 cut(s) 130, 256, 333, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 262
HpyF3I CTNAG 2 cut(s) 665, 808
Hsp92II CATG 7 cut(s) 98, 124, 205, 560, 585, 679, 712
Kzo9I GATC 6 cut(s) 63, 190, 340, 591, 711, 724
LmnI GCTCC 4 cut(s) 19, 51, 514, 897
LweI GCATC 5 cut(s) 139, 252, 427, 651, 685
MabI ACCWGGT 1 cut(s) 427
MaeI CTAG 2 cut(s) 236, 789
MaeIII GTNAC 3 cut(s) 180, 715, 883
MalI GATC 6 cut(s) 65, 192, 342, 593, 713, 726
MboI GATC 6 cut(s) 63, 190, 340, 591, 711, 724
MboII GAAGA 3 cut(s) 297, 400, 641
MflI RGATCY 2 cut(s) 190, 591
MhlI GDGCHC 2 cut(s) 258, 664
MluCI AATT 2 cut(s) 375, 835
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 4 cut(s) 275, 276, 796, 850
MseI TTAA 4 cut(s) 5, 173, 774, 834
MslI CAYNNNNRTG 1 cut(s) 761
MspR9I CCNGG 4 cut(s) 302, 429, 503, 794
MvaI CCWGG 4 cut(s) 302, 429, 503, 794
MwoI GCNNNNNNNGC 2 cut(s) 95, 262
NdeII GATC 6 cut(s) 63, 190, 340, 591, 711, 724
NlaIII CATG 7 cut(s) 98, 124, 205, 560, 585, 679, 712
NlaIV GGNNCC 4 cut(s) 47, 368, 593, 899
NmuCI GTSAC 2 cut(s) 180, 883
NspI RCATGY 1 cut(s) 98
PaeI GCATGC 1 cut(s) 98
PagI TCATGA 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PfeI GAWTC 4 cut(s) 465, 476, 632, 890
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 1 cut(s) 417
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
Psp6I CCWGG 4 cut(s) 300, 427, 501, 792
PspGI CCWGG 4 cut(s) 300, 427, 501, 792
PspN4I GGNNCC 4 cut(s) 47, 368, 593, 899
PsuI RGATCY 2 cut(s) 190, 591
RsaI GTAC 2 cut(s) 473, 707
RsaNI GTAC 2 cut(s) 472, 706
RseI CAYNNNNRTG 1 cut(s) 761
SaqAI TTAA 4 cut(s) 5, 173, 774, 834
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 6 cut(s) 63, 190, 340, 591, 711, 724
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 4 cut(s) 302, 429, 503, 794
SduI GDGCHC 2 cut(s) 258, 664
SetI ASST 6 cut(s) 24, 91, 396, 433, 519, 807
SexAI ACCWGGT 1 cut(s) 427
SfaNI GCATC 5 cut(s) 139, 252, 427, 651, 685
SmiMI CAYNNNNRTG 1 cut(s) 761
SmlI CTYRAG 2 cut(s) 410, 549
SmoI CTYRAG 2 cut(s) 410, 549
SphI GCATGC 1 cut(s) 98
Sse9I AATT 2 cut(s) 375, 835
SsiI CCGC 1 cut(s) 416
SspMI CTAG 2 cut(s) 236, 789
StyD4I CCNGG 4 cut(s) 300, 427, 501, 792
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 135, 850
TasI AATT 2 cut(s) 375, 835
TatI WGTACW 1 cut(s) 705
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 4 cut(s) 465, 476, 632, 890
Tru1I TTAA 4 cut(s) 5, 173, 774, 834
Tru9I TTAA 4 cut(s) 5, 173, 774, 834
TscAI CASTG 2 cut(s) 739, 768
TseFI GTSAC 2 cut(s) 180, 883
Tsp45I GTSAC 2 cut(s) 180, 883
TspDTI ATGAA 5 cut(s) 91, 109, 137, 198, 884
TspGWI ACGGA 2 cut(s) 258, 294
TspRI CASTG 2 cut(s) 739, 768
Van91I CCANNNNNTGG 1 cut(s) 90
VneI GTGCAC 1 cut(s) 254
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
XspI CTAG 2 cut(s) 236, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.