MD16G1218400.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000424
Physical Location & Seq
Forward (+)
21657039 .. 21657317
279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1218400.v1.1.491

Sequence Viewer

Length: 279 bp
ATGAAGGAATATGGAGTGATAGAATCTTGGAACCCGTTTTATTCTACTGAGCATGAAATTATGCCTTGGTGGCTTGGGTATTGCAAACCCTTGGTGTTCACGAAGAACGGTGAAATGGTTCTTTTGAAGAAAGACTATCTTGTTTGGCTTGATTTAGAGGGAAAAAATGGCAACCGAGTAGAAATTGGTGGCCTGCCACTTACCTTTGAAGCAATCATTTGCATAGGGAGCCTTTCTCTTCTTAATGGTGATCCCGTGATTGTTGGGAGGCAGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

93

Amino Acids

10.53

Weight (kDa)

5.29

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 274
AclWI GGATC 1 cut(s) 245
AgsI TTSAA 2 cut(s) 127, 209
AlwI GGATC 1 cut(s) 245
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 271
Asp700I GAANNNNTTC 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 122, 260
BglI GCCNNNNNGGC 1 cut(s) 70
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 32, 230
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BsaJI CCNNGG 2 cut(s) 65, 90
BseDI CCNNGG 2 cut(s) 65, 90
BseMII CTCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 192
BsnI GGCC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 1 cut(s) 274
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 32, 230
BspPI GGATC 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 65, 90
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 2 cut(s) 65, 90
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 70, 228
BsuRI GGCC 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 194
CviAII CATG 1 cut(s) 53
CviJI RGCY 4 cut(s) 73, 148, 192, 231
CviKI_1 RGCY 4 cut(s) 73, 148, 192, 231
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 65, 90
EcoT14I CCWWGG 2 cut(s) 65, 90
ErhI CCWWGG 2 cut(s) 65, 90
FaeI CATG 1 cut(s) 56
FaiI YATR 4 cut(s) 12, 54, 62, 224
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 272
GluI GCNGC 1 cut(s) 272
HaeIII GGCC 1 cut(s) 192
Hin1II CATG 1 cut(s) 56
HinfI GANTC 1 cut(s) 23
HphI GGTGA 2 cut(s) 122, 260
Hpy166II GTNNAC 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 99
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 84, 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 228
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 1 cut(s) 56
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 1 cut(s) 206
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 3 cut(s) 115, 139, 230
MluCI AATT 2 cut(s) 57, 183
MnlI CCTC 2 cut(s) 151, 261
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 274
MwoI GCNNNNNNNGC 2 cut(s) 70, 228
NdeII GATC 1 cut(s) 250
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 2 cut(s) 32, 230
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 32, 230
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 1 cut(s) 250
SetI ASST 1 cut(s) 206
Sse9I AATT 2 cut(s) 57, 183
SsiI CCGC 1 cut(s) 274
StyI CCWWGG 2 cut(s) 65, 90
TaaI ACNGT 1 cut(s) 110
TasI AATT 2 cut(s) 57, 183
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TseI GCWGC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 17, 69
XmnI GAANNNNTTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.