MD08G1079600.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000424
Physical Location & Seq
Reverse (-)
6631929 .. 6632861
933 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1079600.v1.1.491

Sequence Viewer

Length: 933 bp
ATGTCAGACTACTTCCCACCGGAGCTACTCTTCGAAATCCTTGTACTTCTCCCGGCCAAGGATTTGATCCGATGCATGTGTGTTTCCAAAGCTTGGAATGCTTACATCCGCGACGAACGCTTCACCAAAAGGCATCTTCAACGCTCCATCAATACCATCCCTAGCACCATTTTATTTAGCCTATGGGGTACCATTTATACCAAGGATTTCTTTTTGTTGGCTCTTTCCGTCGACGATTCATTCAGCACAGCCGTAGAAATTTGGCAACCGTTGGTTGAACGTCGCGGCTGGGGTGAAATATCGATATTGGGATCCTGTAATGGCGTGGTTTGCATTAAAAACACTGAAAATGCTGAGATAGCTTTGTGGAATCCTTCCATTCAAAAGTTCAAGAGAATTCCCTTCACACCCTCAGTTTCAAGTCCTCAGTATGGATTCGGATATGATTCGACTAATGATGACTATAAACTTGTGGAAATTGAGAAGATCTCAACTCCGTATTCGGTAGACGTTTCTAAGTGGTCTTGGGAAAACATTTCTAATGGTTCTTGGCCCTATTGTGTTACTTTGACTTATGAAGTGCATGTTTACAGCCTAAAATCCAACTTGTGGAAGAAGATCCAAAGCATGCCTTCCAAGGGCCTTGAACTTGTTTCGAAAATCCAATTTTCAAACGGAGCTCTAAATTGGGTGATGGGTGATAACAATATGAGCATAATTTTAACTCTTGATCTTGCCACTGAGAAATATGGTGAGTTTTACTGCCCGGTCAACGGCATTTTGGATGTCAGGATTGAGCTGGAGGTCTTGGGAGGCTATCTATGTGTTTGTATTCGTAACTATAACAACAGCGAATTCGGTATTTGGATTATGAAGGAATATGGAGCGAGAGAATCTGACCTTGCTTTATTCAAGTATTTCTCATCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

311

Amino Acids

35.57

Weight (kDa)

5.28

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 43 1.3e-09 F-box domain
F-box-like PF12937 6 - 45 1.1e-09 F-box-like
FBA_1 PF07734 97 - 298 4.7e-18 F-box associated beta propeller domain
FBA_3 PF08268 100 - 295 2.3e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 188
AccB1I GGYRCC 1 cut(s) 188
AccB7I CCANNNNNTGG 2 cut(s) 93, 609
AccI GTMKAC 2 cut(s) 231, 507
AccII CGCG 2 cut(s) 111, 285
AciI CCGC 2 cut(s) 109, 285
AclWI GGATC 4 cut(s) 61, 306, 319, 613
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 3 cut(s) 258, 396, 854
AfaI GTAC 2 cut(s) 45, 190
AfiI CCNNNNNNNGG 6 cut(s) 58, 93, 431, 609, 638, 773
AgsI TTSAA 8 cut(s) 140, 278, 383, 391, 420, 647, 672, 913
AluBI AGCT 5 cut(s) 25, 92, 362, 680, 799
AluI AGCT 5 cut(s) 25, 92, 362, 680, 799
Alw21I GWGCWC 1 cut(s) 682
AlwI GGATC 4 cut(s) 61, 306, 319, 613
AoxI GGCC 3 cut(s) 54, 551, 640
ApoI RAATTY 3 cut(s) 258, 396, 854
Asp718I GGTACC 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 552, 640
AsuC2I CCSGG 2 cut(s) 53, 767
AsuHPI GGTGA 5 cut(s) 115, 305, 703, 710, 764
AsuII TTCGAA 2 cut(s) 33, 656
BamHI GGATCC 1 cut(s) 311
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 682
Bbv12I GWGCWC 1 cut(s) 682
BccI CCATC 3 cut(s) 155, 164, 688
BceAI ACGGC 2 cut(s) 236, 790
BcnI CCSGG 2 cut(s) 53, 767
BfaI CTAG 1 cut(s) 162
BglII AGATCT 1 cut(s) 486
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme1390I CCNGG 2 cut(s) 53, 767
BmgT120I GGNCC 2 cut(s) 552, 640
BmiI GGNNCC 2 cut(s) 190, 313
BmrFI CCNGG 2 cut(s) 53, 767
BmsI GCATC 2 cut(s) 62, 142
BplI GAGNNNNNCTC 2 cut(s) 473, 505
BpmI CTGGAG 1 cut(s) 821
Bpu14I TTCGAA 2 cut(s) 33, 656
BpuMI CCSGG 2 cut(s) 53, 767
Bsa29I ATCGAT 1 cut(s) 302
BsaJI CCNNGG 3 cut(s) 57, 201, 636
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 93, 431, 609, 638, 773
BseCI ATCGAT 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 57, 201, 636
BseGI GGATG 3 cut(s) 105, 156, 790
BseLI CCNNNNNNNGG 6 cut(s) 58, 93, 431, 609, 638, 773
BseMII CTCAG 4 cut(s) 345, 426, 440, 732
BseYI CCCAGC 1 cut(s) 288
Bsh1236I CGCG 2 cut(s) 111, 285
BshFI GGCC 3 cut(s) 56, 553, 642
BshNI GGYRCC 1 cut(s) 188
BshVI ATCGAT 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 682
BsiSI CCGG 3 cut(s) 20, 53, 767
BslI CCNNNNNNNGG 6 cut(s) 58, 93, 431, 609, 638, 773
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 3 cut(s) 56, 553, 642
Bsp119I TTCGAA 2 cut(s) 33, 656
Bsp1286I GDGCHC 1 cut(s) 682
Bsp143I GATC 5 cut(s) 66, 311, 486, 618, 730
BspACI CCGC 2 cut(s) 109, 285
BspANI GGCC 3 cut(s) 56, 553, 642
BspCNI CTCAG 4 cut(s) 346, 425, 439, 733
BspDI ATCGAT 1 cut(s) 302
BspFNI CGCG 2 cut(s) 111, 285
BspLI GGNNCC 2 cut(s) 190, 313
BspPI GGATC 4 cut(s) 61, 306, 319, 613
BspT104I TTCGAA 2 cut(s) 33, 656
BspT107I GGYRCC 1 cut(s) 188
BssECI CCNNGG 3 cut(s) 57, 201, 636
BssMI GATC 5 cut(s) 66, 311, 486, 618, 730
BssT1I CCWWGG 3 cut(s) 57, 201, 636
Bst4CI ACNGT 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 35
BstBI TTCGAA 2 cut(s) 33, 656
BstC8I GCNNGC 1 cut(s) 629
BstDEI CTNAG 5 cut(s) 354, 412, 426, 516, 741
BstF5I GGATG 3 cut(s) 105, 156, 790
BstFNI CGCG 2 cut(s) 111, 285
BstKTI GATC 5 cut(s) 69, 314, 489, 621, 733
BstMBI GATC 5 cut(s) 66, 311, 486, 618, 730
BstMWI GCNNNNNNNGC 4 cut(s) 98, 117, 330, 359
BstNSI RCATGY 3 cut(s) 79, 587, 631
BstSCI CCNGG 2 cut(s) 51, 765
BstUI CGCG 2 cut(s) 111, 285
BstX2I RGATCY 3 cut(s) 311, 486, 618
BstYI RGATCY 3 cut(s) 311, 486, 618
Bsu15I ATCGAT 1 cut(s) 302
BsuRI GGCC 3 cut(s) 56, 553, 642
BsuTUI ATCGAT 1 cut(s) 302
BtsCI GGATG 3 cut(s) 105, 156, 790
BtsIMutI CAGTG 2 cut(s) 342, 738
Cac8I GCNNGC 1 cut(s) 629
Cfr13I GGNCC 2 cut(s) 552, 640
ClaI ATCGAT 1 cut(s) 302
Csp6I GTAC 2 cut(s) 44, 189
CviAII CATG 3 cut(s) 76, 584, 628
CviQI GTAC 2 cut(s) 44, 189
DdeI CTNAG 5 cut(s) 354, 412, 426, 516, 741
DpnI GATC 5 cut(s) 68, 313, 488, 620, 732
DpnII GATC 5 cut(s) 66, 311, 486, 618, 730
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 680
Eco130I CCWWGG 3 cut(s) 57, 201, 636
Eco24I GRGCYC 1 cut(s) 682
Eco53kI GAGCTC 1 cut(s) 680
EcoICRI GAGCTC 1 cut(s) 680
EcoO109I RGGNCCY 1 cut(s) 640
EcoRI GAATTC 2 cut(s) 396, 854
EcoT14I CCWWGG 3 cut(s) 57, 201, 636
EcoT22I ATGCAT 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 682
ErhI CCWWGG 3 cut(s) 57, 201, 636
FaeI CATG 3 cut(s) 79, 587, 631
FalI AAGNNNNNCTT 4 cut(s) 194, 226, 616, 648
FatI CATG 3 cut(s) 75, 583, 627
FblI GTMKAC 2 cut(s) 231, 507
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 3 cut(s) 92, 143, 797
FriOI GRGCYC 1 cut(s) 682
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 1 cut(s) 162
GluI GCNGC 1 cut(s) 286
GsaI CCCAGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 821
HaeIII GGCC 3 cut(s) 56, 553, 642
HapII CCGG 3 cut(s) 20, 53, 767
Hin1II CATG 3 cut(s) 79, 587, 631
HincII GTYRAC 2 cut(s) 232, 772
HindII GTYRAC 2 cut(s) 232, 772
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 5 cut(s) 236, 370, 435, 446, 893
HpaII CCGG 3 cut(s) 20, 53, 767
HphI GGTGA 5 cut(s) 115, 305, 703, 710, 764
Hpy166II GTNNAC 4 cut(s) 232, 508, 589, 772
Hpy188I TCNGA 4 cut(s) 7, 71, 440, 898
Hpy188III TCNNGA 3 cut(s) 391, 728, 790
Hpy8I GTNNAC 4 cut(s) 232, 508, 589, 772
Hpy99I CGWCG 4 cut(s) 116, 233, 236, 285
HpyAV CCTTC 4 cut(s) 384, 412, 642, 868
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4IV ACGT 2 cut(s) 280, 510
HpyCH4V TGCA 3 cut(s) 75, 333, 583
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 117, 330, 359
HpyF3I CTNAG 5 cut(s) 354, 412, 426, 516, 741
HpySE526I ACGT 2 cut(s) 280, 510
Hsp92II CATG 3 cut(s) 79, 587, 631
KpnI GGTACC 1 cut(s) 192
Kzo9I GATC 5 cut(s) 66, 311, 486, 618, 730
LmnI GCTCC 4 cut(s) 22, 149, 677, 884
LpnPI CCDG 7 cut(s) 33, 66, 274, 328, 775, 780, 785
LweI GCATC 2 cut(s) 62, 142
MaeI CTAG 1 cut(s) 162
MaeII ACGT 2 cut(s) 280, 510
MaeIII GTNAC 2 cut(s) 562, 836
MalI GATC 5 cut(s) 68, 313, 488, 620, 732
MboI GATC 5 cut(s) 66, 311, 486, 618, 730
MboII GAAGA 5 cut(s) 22, 128, 496, 625, 628
MflI RGATCY 3 cut(s) 311, 486, 618
MhlI GDGCHC 1 cut(s) 682
MluCI AATT 7 cut(s) 258, 396, 477, 665, 685, 717, 854
MmeI TCCRAC 1 cut(s) 627
MnlI CCTC 4 cut(s) 421, 435, 796, 806
Mph1103I ATGCAT 1 cut(s) 77
MseI TTAA 2 cut(s) 336, 722
MspI CCGG 3 cut(s) 20, 53, 767
MspR9I CCNGG 2 cut(s) 53, 767
Mva1269I GAATGC 1 cut(s) 103
MvnI CGCG 2 cut(s) 111, 285
MwoI GCNNNNNNNGC 4 cut(s) 98, 117, 330, 359
NciI CCSGG 2 cut(s) 53, 767
NdeII GATC 5 cut(s) 66, 311, 486, 618, 730
NlaIII CATG 3 cut(s) 79, 587, 631
NlaIV GGNNCC 2 cut(s) 190, 313
NsiI ATGCAT 1 cut(s) 77
NspI RCATGY 3 cut(s) 79, 587, 631
NspV TTCGAA 2 cut(s) 33, 656
PaeI GCATGC 1 cut(s) 631
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 5 cut(s) 236, 370, 435, 446, 893
PflMI CCANNNNNTGG 2 cut(s) 93, 609
PkrI GCNGC 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 682
PspFI CCCAGC 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 190, 313
PspPI GGNCC 2 cut(s) 552, 640
PsuI RGATCY 3 cut(s) 311, 486, 618
RsaI GTAC 2 cut(s) 45, 190
RsaNI GTAC 2 cut(s) 44, 189
SacI GAGCTC 1 cut(s) 682
SalI GTCGAC 1 cut(s) 230
SaqAI TTAA 2 cut(s) 336, 722
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 5 cut(s) 66, 311, 486, 618, 730
Sau96I GGNCC 2 cut(s) 552, 640
ScrFI CCNGG 2 cut(s) 53, 767
SduI GDGCHC 1 cut(s) 682
SetI ASST 9 cut(s) 27, 94, 283, 364, 513, 682, 801, 807, 903
SfaNI GCATC 2 cut(s) 62, 142
SfuI TTCGAA 2 cut(s) 33, 656
SgrDI CGTCGACG 1 cut(s) 230
SphI GCATGC 1 cut(s) 631
Sse9I AATT 7 cut(s) 258, 396, 477, 665, 685, 717, 854
SsiI CCGC 2 cut(s) 109, 285
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 682
StyD4I CCNGG 2 cut(s) 51, 765
StyI CCWWGG 3 cut(s) 57, 201, 636
TaaI ACNGT 1 cut(s) 270
TaiI ACGT 2 cut(s) 283, 513
TaqI TCGA 5 cut(s) 33, 231, 302, 449, 656
TasI AATT 7 cut(s) 258, 396, 477, 665, 685, 717, 854
TatI WGTACW 1 cut(s) 43
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 5 cut(s) 236, 370, 435, 446, 893
Tru1I TTAA 2 cut(s) 336, 722
Tru9I TTAA 2 cut(s) 336, 722
TscAI CASTG 2 cut(s) 349, 745
TspDTI ATGAA 3 cut(s) 228, 591, 887
TspGWI ACGGA 3 cut(s) 217, 486, 690
TspRI CASTG 2 cut(s) 349, 745
Van91I CCANNNNNTGG 2 cut(s) 93, 609
XapI RAATTY 3 cut(s) 258, 396, 854
XceI RCATGY 3 cut(s) 79, 587, 631
XmiI GTMKAC 2 cut(s) 231, 507
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.