pycom16g17180

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000424
Physical Location & Seq
Reverse (-)
13249594 .. 13250006
413 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g17180.1

Sequence Viewer

Length: 369 bp
ATGACATTTTATTATTATTCTTCTTACAATAGAGGTCCACTGGCCATCTCCGTCCTCATCCGCTTTGGCAAAGTCGACGAGCTCAAAGAAGCACAAGCTTTGAAGCGCACGACCCGGAAGATTTTTTGCGGAACAGAGAACGATGAGAAGAAACCATGTCAGAATCACACTTCCCACCGGAGATACTTGTTGACATCCTTTCACGCTTGGAACGCCATCATCCGCGACCATCGCTTCATCAAATCTCATCTTCAACGCTCCATCCATACCAATTCTGCTCGAACCCTTTTACTCAAGTCATATAATGATCCTCCATCAGATTTCTTTCATTGCCTTTCAAAGGCGATGAAGAGTTTGGGACGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

123

Amino Acids

14.34

Weight (kDa)

10.02

Isoelectric Point (pI)

25.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AccII CGCG 1 cut(s) 225
AciI CCGC 3 cut(s) 61, 129, 223
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 3 cut(s) 103, 254, 339
AluBI AGCT 2 cut(s) 82, 98
AluI AGCT 2 cut(s) 82, 98
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 1 cut(s) 302
AoxI GGCC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 115
AvaII GGWCC 1 cut(s) 35
BalI TGGCCA 1 cut(s) 44
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BccI CCATC 5 cut(s) 53, 224, 237, 269, 322
BcnI CCSGG 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 328
BseGI GGATG 4 cut(s) 57, 194, 219, 261
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 2 cut(s) 115, 178
BslI CCNNNNNNNGG 1 cut(s) 340
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 3 cut(s) 61, 129, 223
BspANI GGCC 1 cut(s) 44
BspFNI CGCG 1 cut(s) 225
BspPI GGATC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 1 cut(s) 45
BssMI GATC 1 cut(s) 307
Bst4CI ACNGT 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 344
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 4 cut(s) 57, 194, 219, 261
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 212, 231
BstSCI CCNGG 1 cut(s) 113
BstUI CGCG 1 cut(s) 225
BsuRI GGCC 1 cut(s) 44
BtgZI GCGATG 2 cut(s) 215, 359
BtsCI GGATG 4 cut(s) 57, 194, 219, 261
BtsIMutI CAGTG 1 cut(s) 38
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 1 cut(s) 156
CviJI RGCY 3 cut(s) 44, 82, 98
CviKI_1 RGCY 3 cut(s) 44, 82, 98
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 35
Eco53kI GAGCTC 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 82
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 1 cut(s) 159
FaiI YATR 4 cut(s) 157, 267, 301, 303
FatI CATG 1 cut(s) 155
FblI GTMKAC 1 cut(s) 75
FokI GGATG 4 cut(s) 44, 181, 206, 248
FriOI GRGCYC 1 cut(s) 84
GlaI GCGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 44
HapII CCGG 2 cut(s) 115, 178
HhaI GCGC 1 cut(s) 108
Hin1II CATG 1 cut(s) 159
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HincII GTYRAC 2 cut(s) 76, 192
HindII GTYRAC 2 cut(s) 76, 192
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 1 cut(s) 163
HpaII CCGG 2 cut(s) 115, 178
Hpy166II GTNNAC 3 cut(s) 38, 76, 192
Hpy188I TCNGA 2 cut(s) 162, 319
Hpy8I GTNNAC 3 cut(s) 38, 76, 192
Hpy99I CGWCG 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 231
Hsp92II CATG 1 cut(s) 159
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 3 cut(s) 26, 128, 191
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 5 cut(s) 12, 130, 160, 242, 361
MhlI GDGCHC 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 1 cut(s) 271
MluNI TGGCCA 1 cut(s) 44
MnlI CCTC 3 cut(s) 26, 65, 321
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
Msp20I TGGCCA 1 cut(s) 44
MspI CCGG 2 cut(s) 115, 178
MspR9I CCNGG 1 cut(s) 115
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 212, 231
NciI CCSGG 1 cut(s) 115
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 159
PfeI GAWTC 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 35
SacI GAGCTC 1 cut(s) 84
SalI GTCGAC 1 cut(s) 74
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 84
SetI ASST 3 cut(s) 37, 84, 100
SinI GGWCC 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 271
SsiI CCGC 3 cut(s) 61, 129, 223
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 363
TaqI TCGA 2 cut(s) 75, 280
TasI AATT 1 cut(s) 271
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 1 cut(s) 45
TspDTI ATGAA 3 cut(s) 226, 317, 362
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 35
XagI CCTNNNNNAGG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.