MD16G1218700.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000424
Physical Location & Seq
Forward (+)
21675484 .. 21677489
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1218700.v1.1.491

Sequence Viewer

Length: 306 bp
ATGCACGAGTACGGAACGTCTGACTCTTGGACCTTGCTCTATTCCATTGGTGTGGAAACTGGCCCGGAAACTGTGCCTTGGTGGTTTGATCATTGTGAACCTTTGGGGTTCTCAAAGAACGGTGAAATGGTTCTCTTGAAGAAAGGTGAGGGTGCGCTTGTTTGGTTTGATTTAGAGCAGAAAAATAGTAACCAAGTCTACAGTGGTGGTCTGCCACGTCTCTTTAAAGCAACCATTTGCTTAGGGACCCTTTCTCTTCTTGATGGTGACTCCGTCGTGAGCGAAGAAGGTACTTGGGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

102

Amino Acids

11.16

Weight (kDa)

4.45

Isoelectric Point (pI)

20.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AfaI GTAC 2 cut(s) 11, 292
AgsI TTSAA 1 cut(s) 139
AjiI CACGTC 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 1 cut(s) 61
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 3 cut(s) 30, 62, 246
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 3 cut(s) 134, 158, 278
AvaII GGWCC 2 cut(s) 30, 246
BaeI ACNNNNGTAYC 1 cut(s) 282
BauI CACGAG 1 cut(s) 5
BccI CCATC 1 cut(s) 257
BclI TGATCA 1 cut(s) 88
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 2 cut(s) 30, 246
BmgBI CACGTC 1 cut(s) 218
BmgT120I GGNCC 3 cut(s) 30, 62, 246
BmiI GGNNCC 2 cut(s) 247, 248
BmrFI CCNGG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 64
BshFI GGCC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 88
BspANI GGCC 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 247, 248
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 1 cut(s) 88
BssSI CACGAG 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 5
Bst4CI ACNGT 3 cut(s) 73, 122, 203
Bst6I CTCTTC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 241
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 52
BsuRI GGCC 1 cut(s) 63
BtrI CACGTC 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 208
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 3 cut(s) 30, 62, 246
Csp6I GTAC 2 cut(s) 10, 291
CviJI RGCY 1 cut(s) 63
CviKI_1 RGCY 1 cut(s) 63
CviQI GTAC 2 cut(s) 10, 291
DdeI CTNAG 1 cut(s) 241
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraI TTTAAA 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 77
Eco47I GGWCC 2 cut(s) 30, 246
EcoO109I RGGNCCY 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 224
FaqI GGGAC 1 cut(s) 259
FbaI TGATCA 1 cut(s) 88
FblI GTMKAC 1 cut(s) 198
GlaI GCGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 65
HhaI GCGC 1 cut(s) 157
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HinfI GANTC 2 cut(s) 23, 269
HpaII CCGG 1 cut(s) 65
HphI GGTGA 3 cut(s) 134, 158, 278
Hpy166II GTNNAC 2 cut(s) 98, 199
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 3 cut(s) 136, 260, 277
Hpy8I GTNNAC 2 cut(s) 98, 199
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 3 cut(s) 73, 122, 203
HpyCH4IV ACGT 2 cut(s) 17, 217
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 2 cut(s) 17, 217
HspAI GCGC 1 cut(s) 155
KflI GGGWCCC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 2 cut(s) 45, 78
MaeII ACGT 2 cut(s) 17, 217
MaeIII GTNAC 2 cut(s) 188, 266
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 151, 248, 296
MlyI GAGTC 2 cut(s) 17, 263
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 65
NciI CCSGG 1 cut(s) 65
NdeII GATC 1 cut(s) 88
NlaIV GGNNCC 2 cut(s) 247, 248
NmuCI GTSAC 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 129
PflFI GACNNNGTC 1 cut(s) 272
PleI GAGTC 2 cut(s) 17, 263
PpsI GAGTC 2 cut(s) 17, 263
PpuMI RGGWCCY 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 247, 248
PspPI GGNCC 3 cut(s) 30, 62, 246
PspPPI RGGWCCY 1 cut(s) 246
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 2 cut(s) 11, 292
RsaNI GTAC 2 cut(s) 10, 291
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 3 cut(s) 30, 62, 246
SchI GAGTC 2 cut(s) 17, 263
ScrFI CCNGG 1 cut(s) 65
SetI ASST 6 cut(s) 20, 35, 103, 148, 220, 292
SfcI CTRYAG 1 cut(s) 199
SinI GGWCC 2 cut(s) 30, 246
SmiMI CAYNNNNRTG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 3 cut(s) 73, 122, 203
TaiI ACGT 2 cut(s) 20, 220
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
TspGWI ACGGA 2 cut(s) 27, 262
TspRI CASTG 1 cut(s) 208
Tth111I GACNNNGTC 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 30, 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.