FvH4_2g26290

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000424
Physical Location & Seq
Forward (+)
21155489 .. 21158515
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26290.t1

Sequence Viewer

Length: 1242 bp
ATGGCGGTGATTACGGACTTGCCTGTTGAGCTTATTACTGACATTCTGGTACGGCTCTCCCCCCAGAGATTGCTTCAATGCGTGTGCGCGTTGAAATCGTTGAATGCTCTGATTTCCAGCGAAGGGTTCTCTGAGGCTTATGTTAAGAGGTCGCTCGAAACCAACAATTACCGAACACTTTTGATGGCAGAGGAGACGGCAGAGGGGGAGGATTTTAAATACCCCACAGAGTTCTTTGCTGCATCATTCTATCCAAGAGAGTCATTTAGCAATGCTCGCTCTGTTATTCAGCCACTGATACGCCCTGGGAGAGTACGTACAGAGATTGTGGGGTGCTATAATGGGCTAGTGTGCATACACAACCCTCATCATTCTCGAGATTTGGCGGTTTGGAACCCGTCGATTCGGAGATTCAAGAGAATCCCATTTTCACCCATTGAGGTGCCAGCAGCAGCAAAGACCGGCAGCATCAGTGGGGTCAAGTATGGGTTTGGATACGATCCAGCCACGCAGGACTATAAAGTTGTTCGGATTTATGAATTTTCTTGTGATCGAAGGGCTAATGTGGGTTCGGAAGTGAAGGTTTACGGCTTGAAAACCAAGTCCTGGAAGAAGATAGAAAGCTTCTCTTGCACATGGGTTTCAGACCGGGCTATTCCTCTAGAGGGTGCTCTTCATTGGGTCGGGAAACTTGAACCACTTTCCGATGGTTTAAGGGTTTTAGCTCTTGATTTGGGAAAGGAAGTTTTCAAGGAGTTTCGCACCCCGTTTCGGAGGCATAATACAATGGATTTGGAAGTCTTGAATGGAAAACTCTGTATGGGTGTTTTTGTGGGCTTTTCCGAACATGATATCTGGGAAATGGAAGAATATGGAGTGTCCGAGTCTTGGATTCGTTTGTATACTTTTAGAGAGGGAATTGTGGATTGGGGTTTTGAGTACTTGACACCTCTTGCCTTATCAAGGACTGGAAAAGGAATTCTTATGCATGATCGCTCTGTTTCGACTGATGGAAACCTTTTCTGGTATGATCCAAAGAAAAACACAGGAAAAGCAGTTCAATTTCTTGGTATGCCCAAGGCCTTTGCAGCAGCTGTTTGTGTGGCCAACATCGGACTCCTTGATGGTGATCCAGTCATTAGGCAGCAACAACTCCTTCCTATCAAGAGGAAAAGTGGAAGCAGGAAAATCTTTGAAGGGGAAGGATCGACTGAAAAAGCAAAACAAGGTGACCTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

414

Amino Acids

46.56

Weight (kDa)

8.63

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 83 - 361 4.8e-20 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 94 - 245 1.5e-07 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 106 - 302 8.4e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 606
AccI GTMKAC 1 cut(s) 902
AccII CGCG 1 cut(s) 89
AciI CCGC 2 cut(s) 5, 386
AclWI GGATC 4 cut(s) 494, 1025, 1124, 1213
AcoI YGGCCR 1 cut(s) 1104
AcsI RAATTY 2 cut(s) 539, 978
AfaI GTAC 4 cut(s) 51, 315, 319, 941
AfiI CCNNNNNNNGG 6 cut(s) 123, 606, 665, 771, 888, 963
AjnI CCWGG 2 cut(s) 304, 605
AjuI GAANNNNNNNTTGG 2 cut(s) 910, 942
AloI GAACNNNNNNTCC 2 cut(s) 1041, 1073
AluBI AGCT 4 cut(s) 31, 624, 725, 1094
AluI AGCT 4 cut(s) 31, 624, 725, 1094
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 4 cut(s) 494, 1025, 1124, 1213
AlwNI CAGNNNCTG 2 cut(s) 295, 1094
Ama87I CYCGRG 1 cut(s) 375
AoxI GGCC 2 cut(s) 1080, 1104
ApeKI GCWGC 7 cut(s) 239, 449, 452, 465, 1088, 1091, 1144
ApoI RAATTY 2 cut(s) 539, 978
AspLEI GCGC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 650
AsuHPI GGTGA 4 cut(s) 19, 423, 1139, 1241
AvaI CYCGRG 1 cut(s) 375
BalI TGGCCA 1 cut(s) 1106
BanI GGYRCC 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 7 cut(s) 226, 461, 464, 477, 1100, 1103, 1156
BccI CCATC 4 cut(s) 178, 701, 1004, 1118
BceAI ACGGC 3 cut(s) 68, 213, 604
BciT130I CCWGG 2 cut(s) 306, 607
BciVI GTATCC 1 cut(s) 488
BcnI CCSGG 1 cut(s) 650
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 2 cut(s) 347, 662
BfuI GTATCC 1 cut(s) 488
BisI GCNGC 7 cut(s) 240, 450, 453, 466, 1089, 1092, 1145
BlsI GCNGC 7 cut(s) 241, 451, 454, 467, 1090, 1093, 1146
BmcAI AGTACT 1 cut(s) 941
Bme1390I CCNGG 3 cut(s) 306, 607, 650
BmeT110I CYCGRG 1 cut(s) 375
BmiI GGNNCC 2 cut(s) 395, 444
BmrFI CCNGG 3 cut(s) 306, 607, 650
BmsI GCATC 2 cut(s) 251, 477
BpuMI CCSGG 1 cut(s) 650
BsaAI YACGTR 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 1128
BsaJI CCNNGG 3 cut(s) 304, 305, 1077
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 6 cut(s) 123, 606, 665, 771, 888, 963
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 2 cut(s) 973, 1133
Bse3DI GCAATG 1 cut(s) 277
Bse8I GATNNNNATC 1 cut(s) 1128
BseBI CCWGG 2 cut(s) 306, 607
BseDI CCNNGG 3 cut(s) 304, 305, 1077
BseJI GATNNNNATC 1 cut(s) 1128
BseLI CCNNNNNNNGG 6 cut(s) 123, 606, 665, 771, 888, 963
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 2 cut(s) 973, 1133
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 7 cut(s) 226, 461, 464, 477, 1100, 1103, 1156
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 1082, 1106
BshNI GGYRCC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 673
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 2 cut(s) 462, 649
BslI CCNNNNNNNGG 6 cut(s) 123, 606, 665, 771, 888, 963
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 2 cut(s) 1082, 1106
BsoBI CYCGRG 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 673
Bsp143I GATC 6 cut(s) 499, 550, 991, 1030, 1129, 1205
BspACI CCGC 2 cut(s) 5, 386
BspANI GGCC 2 cut(s) 1082, 1106
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 2 cut(s) 395, 444
BspPI GGATC 4 cut(s) 494, 1025, 1124, 1213
BspQI GCTCTTC 1 cut(s) 678
BspT107I GGYRCC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 461
BsrI ACTGG 2 cut(s) 973, 1133
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 3 cut(s) 304, 305, 1077
BssMI GATC 6 cut(s) 499, 550, 991, 1030, 1129, 1205
BssNAI GTATAC 1 cut(s) 903
BssT1I CCWWGG 1 cut(s) 1077
Bst1107I GTATAC 1 cut(s) 903
Bst2UI CCWGG 2 cut(s) 306, 607
Bst6I CTCTTC 1 cut(s) 678
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 277, 447
BstDEI CTNAG 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 1229
BstENI CCTNNNNNAGG 1 cut(s) 961
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 6 cut(s) 502, 553, 994, 1033, 1132, 1208
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 6 cut(s) 499, 550, 991, 1030, 1129, 1205
BstMWI GCNNNNNNNGC 4 cut(s) 28, 276, 630, 1088
BstNI CCWGG 2 cut(s) 306, 607
BstPI GGTNACC 1 cut(s) 1229
BstSCI CCNGG 3 cut(s) 304, 605, 648
BstSNI TACGTA 1 cut(s) 317
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 7 cut(s) 226, 461, 464, 477, 1100, 1103, 1156
BstZ17I GTATAC 1 cut(s) 903
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 2 cut(s) 1082, 1106
BtsIMutI CAGTG 2 cut(s) 293, 478
Cac8I GCNNGC 2 cut(s) 277, 447
CaiI CAGNNNCTG 2 cut(s) 295, 1094
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 461
Csp6I GTAC 4 cut(s) 50, 314, 318, 940
CviAII CATG 3 cut(s) 636, 848, 989
CviQI GTAC 4 cut(s) 50, 314, 318, 940
DdeI CTNAG 1 cut(s) 132
DpnI GATC 6 cut(s) 501, 552, 993, 1032, 1131, 1207
DpnII GATC 6 cut(s) 499, 550, 991, 1030, 1129, 1205
DraI TTTAAA 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 1104
Eam1104I CTCTTC 1 cut(s) 678
EarI CTCTTC 1 cut(s) 678
Eco105I TACGTA 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 1077
Eco147I AGGCCT 1 cut(s) 1082
Eco32I GATATC 1 cut(s) 853
Eco88I CYCGRG 1 cut(s) 375
Eco91I GGTNACC 1 cut(s) 1229
EcoNI CCTNNNNNAGG 1 cut(s) 961
EcoO65I GGTNACC 1 cut(s) 1229
EcoRI GAATTC 1 cut(s) 978
EcoRII CCWGG 2 cut(s) 304, 605
EcoRV GATATC 1 cut(s) 853
EcoT14I CCWWGG 1 cut(s) 1077
EcoT22I ATGCAT 1 cut(s) 990
ErhI CCWWGG 1 cut(s) 1077
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 3 cut(s) 639, 851, 992
FalI AAGNNNNNCTT 4 cut(s) 613, 645, 966, 998
FatI CATG 3 cut(s) 635, 847, 988
FblI GTMKAC 1 cut(s) 902
Fnu4HI GCNGC 7 cut(s) 240, 450, 453, 466, 1089, 1092, 1145
Fsp4HI GCNGC 7 cut(s) 240, 450, 453, 466, 1089, 1092, 1145
FspBI CTAG 2 cut(s) 347, 662
GlaI GCGC 1 cut(s) 88
GluI GCNGC 7 cut(s) 240, 450, 453, 466, 1089, 1092, 1145
HaeIII GGCC 2 cut(s) 1082, 1106
HapII CCGG 2 cut(s) 462, 649
HhaI GCGC 1 cut(s) 89
Hin1II CATG 3 cut(s) 639, 851, 992
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 622
HinfI GANTC 7 cut(s) 260, 403, 411, 420, 884, 892, 1116
HpaII CCGG 2 cut(s) 462, 649
HphI GGTGA 4 cut(s) 19, 423, 1139, 1241
Hpy166II GTNNAC 2 cut(s) 586, 903
Hpy188III TCNNGA 8 cut(s) 375, 377, 415, 662, 685, 728, 802, 1165
Hpy8I GTNNAC 2 cut(s) 586, 903
Hpy99I CGWCG 1 cut(s) 403
HpyAV CCTTC 6 cut(s) 116, 549, 574, 1166, 1190, 1196
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 5 cut(s) 242, 354, 633, 988, 1088
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 276, 630, 1088
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 3 cut(s) 639, 851, 992
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 6 cut(s) 499, 550, 991, 1030, 1129, 1205
LguI GCTCTTC 1 cut(s) 678
Lsp1109I GCAGC 7 cut(s) 226, 461, 464, 477, 1100, 1103, 1156
LweI GCATC 2 cut(s) 251, 477
MaeI CTAG 2 cut(s) 347, 662
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 1229
MalI GATC 6 cut(s) 501, 552, 993, 1032, 1131, 1207
MboI GATC 6 cut(s) 499, 550, 991, 1030, 1129, 1205
MboII GAAGA 4 cut(s) 622, 625, 665, 878
MhlI GDGCHC 1 cut(s) 673
MlsI TGGCCA 1 cut(s) 1106
MluCI AATT 5 cut(s) 166, 539, 918, 978, 1061
MluNI TGGCCA 1 cut(s) 1106
MlyI GAGTC 3 cut(s) 269, 893, 1110
Mox20I TGGCCA 1 cut(s) 1106
Mph1103I ATGCAT 1 cut(s) 990
MscI TGGCCA 1 cut(s) 1106
MseI TTAA 4 cut(s) 144, 216, 713, 1240
MslI CAYNNNNRTG 1 cut(s) 440
Msp20I TGGCCA 1 cut(s) 1106
MspA1I CMGCKG 1 cut(s) 1094
MspI CCGG 2 cut(s) 462, 649
MspR9I CCNGG 3 cut(s) 306, 607, 650
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 2 cut(s) 306, 607
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 4 cut(s) 28, 276, 630, 1088
NciI CCSGG 1 cut(s) 650
NdeII GATC 6 cut(s) 499, 550, 991, 1030, 1129, 1205
NlaIII CATG 3 cut(s) 639, 851, 992
NlaIV GGNNCC 2 cut(s) 395, 444
NmuCI GTSAC 1 cut(s) 1229
NsiI ATGCAT 1 cut(s) 990
PaeR7I CTCGAG 1 cut(s) 375
PasI CCCWGGG 1 cut(s) 305
PceI AGGCCT 1 cut(s) 1082
PciSI GCTCTTC 1 cut(s) 678
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 4 cut(s) 403, 411, 420, 892
PflMI CCANNNNNTGG 1 cut(s) 606
PfoI TCCNGGA 1 cut(s) 605
PkrI GCNGC 7 cut(s) 241, 451, 454, 467, 1090, 1093, 1146
PleI GAGTC 3 cut(s) 268, 892, 1110
PpsI GAGTC 3 cut(s) 268, 892, 1110
Ppu21I YACGTR 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 304, 605
PspEI GGTNACC 1 cut(s) 1229
PspGI CCWGG 2 cut(s) 304, 605
PspN4I GGNNCC 2 cut(s) 395, 444
PstNI CAGNNNCTG 2 cut(s) 295, 1094
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 4 cut(s) 51, 315, 319, 941
RsaNI GTAC 4 cut(s) 50, 314, 318, 940
RseI CAYNNNNRTG 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 4 cut(s) 144, 216, 713, 1240
SatI GCNGC 7 cut(s) 240, 450, 453, 466, 1089, 1092, 1145
Sau3AI GATC 6 cut(s) 499, 550, 991, 1030, 1129, 1205
ScaI AGTACT 1 cut(s) 941
SchI GAGTC 3 cut(s) 269, 893, 1110
ScrFI CCNGG 3 cut(s) 306, 607, 650
SduI GDGCHC 1 cut(s) 673
SfaNI GCATC 2 cut(s) 251, 477
Sfr274I CTCGAG 1 cut(s) 375
SlaI CTCGAG 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 375
SmoI CTYRAG 1 cut(s) 375
SnaBI TACGTA 1 cut(s) 317
Sse9I AATT 5 cut(s) 166, 539, 918, 978, 1061
SseBI AGGCCT 1 cut(s) 1082
SsiI CCGC 2 cut(s) 5, 386
SspMI CTAG 2 cut(s) 347, 662
StuI AGGCCT 1 cut(s) 1082
StyD4I CCNGG 3 cut(s) 304, 605, 648
StyI CCWWGG 1 cut(s) 1077
TaiI ACGT 1 cut(s) 319
TaqI TCGA 6 cut(s) 156, 376, 401, 553, 1004, 1208
TasI AATT 5 cut(s) 166, 539, 918, 978, 1061
TatI WGTACW 1 cut(s) 939
TfiI GAWTC 4 cut(s) 403, 411, 420, 892
Tru1I TTAA 4 cut(s) 144, 216, 713, 1240
Tru9I TTAA 4 cut(s) 144, 216, 713, 1240
TscAI CASTG 2 cut(s) 300, 478
TseFI GTSAC 1 cut(s) 1229
TseI GCWGC 7 cut(s) 239, 449, 452, 465, 1088, 1091, 1144
Tsp45I GTSAC 1 cut(s) 1229
TspDTI ATGAA 2 cut(s) 552, 665
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 2 cut(s) 300, 478
Van91I CCANNNNNTGG 1 cut(s) 606
XagI CCTNNNNNAGG 1 cut(s) 961
XapI RAATTY 2 cut(s) 539, 978
XbaI TCTAGA 1 cut(s) 661
XhoI CTCGAG 1 cut(s) 375
XmiI GTMKAC 1 cut(s) 902
XspI CTAG 2 cut(s) 347, 662
ZrmI AGTACT 1 cut(s) 941
Zsp2I ATGCAT 1 cut(s) 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.