Rroxscaffold_2G00081980

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000424
Physical Location & Seq
Reverse (-)
4890474 .. 4891620
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081980.1

Sequence Viewer

Length: 1131 bp
ATGTCCAACCTTTCAACAAAATCATATTTACCGCCGGAAATGATCTTTAACATCCTTTTACGGCTCCCAACCAAGGATCTGATACGGTTCATGTGTGTTTGTAGAGCTTGGAATGCTACTATCCACGACGAAAAGTTCATCAAAGCTCATCATGACCTCGTGACAACCAACAGTGCTCGCACCCTTGTACTTGTACCATACGGTCCACAGTCCGGAGAATCCTCTGTATCGATTTCTTTCGACGGATATGTATTTGGTAATGCCGTAAGAATTCAGCGGCCATTGGAACAGAATACCAGGATAGTGAGTTACTGTAACGGTTTGGTTTGCACTGATATCTATGATGCAGTATCTAAACAAGCGGATTTTGCAGTATGGAATCCGTCGATTCAAAGGTTGAAGAGAATTCCCTTAACAGCCATCGAGCTGCCAGCAGGGCCTACAGCGAGATATCCGAAGTGGATGTATGGGTTTGGGTACGATTCAACCAATGATGACTATAAATTTGTGAAAGCGGTGGTATCTGTTAATAGGAATCATGAACTGAAAATTTATAGCTTAAAATCCAACTCATGGAAGAAGATCCAAAACGTGCCTCGCATTGGGCGTTTTGGACTAGCTGCAGAATATCTATCCTTTCTGTCCTTTCTGAATGGTGCTCTACATTGGCTGATGCATCGTAACTTAATTGTAACTCTTGATCTCGCAACTGAGAAGTATGACCATTTTCCCACCCCGGTGGTTGTTGATCTCATTGATGATCCCCTTCGATGGACTCTGGAGGTCTTGGGAGGATATCTGTGTGTGTATTATAAAGACACAGGCTTATATTTGAATCATGTGTGGATTATGAAAGAATATGGAGTGACAGCATCTTGGACTCGGTTATATACTATAGATGCGAGGGATATGCCTCGGAGGCCTTTTCATTATCCCCACCCCTATTATAAACCCTTGGTGTTTTCAAAGACCGGCAAGATGGTTCTATTAGTAGTAGACAACAACATGCTTTGCTGGTATGACTTGGAGAAAAAGAGTGCGAAAGAAGTTGAGATTCTTGGTACGCCCTTTAAATTTACAGCAGCTATTTGTGTGGGAAACCTTCATCTCCTCAATAATGATCCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

376

Amino Acids

43.22

Weight (kDa)

8.95

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 9 - 44 3.1e-09 F-box-like
F-box PF00646 10 - 47 9.5e-11 F-box domain
FBA_3 PF08268 95 - 358 8.8e-16 F-box associated beta propeller domain
FBA_1 PF07734 96 - 351 6.7e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 813, 948
AccB7I CCANNNNNTGG 1 cut(s) 573
AccI GTMKAC 1 cut(s) 996
AccIII TCCGGA 1 cut(s) 212
AciI CCGC 4 cut(s) 32, 277, 362, 515
AclWI GGATC 4 cut(s) 84, 577, 755, 1115
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 5 cut(s) 270, 405, 503, 549, 1073
AfaI GTAC 4 cut(s) 189, 195, 479, 1063
AfiI CCNNNNNNNGG 5 cut(s) 73, 212, 573, 602, 771
AgsI TTSAA 6 cut(s) 15, 392, 400, 486, 835, 966
AjnI CCWGG 1 cut(s) 296
AleI CACNNNNGTG 1 cut(s) 737
AluBI AGCT 6 cut(s) 107, 146, 427, 558, 620, 1085
AluI AGCT 6 cut(s) 107, 146, 427, 558, 620, 1085
Alw21I GWGCWC 2 cut(s) 178, 661
AlwI GGATC 4 cut(s) 84, 577, 755, 1115
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 3 cut(s) 278, 437, 920
ApeKI GCWGC 3 cut(s) 427, 620, 1082
ApoI RAATTY 5 cut(s) 270, 405, 503, 549, 1073
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
AspS9I GGNCC 2 cut(s) 203, 437
AsuC2I CCSGG 1 cut(s) 737
AvaII GGWCC 1 cut(s) 203
BauI CACGAG 1 cut(s) 158
Bbv12I GWGCWC 2 cut(s) 178, 661
BbvI GCAGC 3 cut(s) 414, 607, 1094
BccI CCATC 3 cut(s) 428, 765, 973
BceAI ACGGC 2 cut(s) 77, 248
BcgI CGANNNNNNTGC 2 cut(s) 892, 926
BciT130I CCWGG 1 cut(s) 298
BcnI CCSGG 1 cut(s) 737
BfaI CTAG 1 cut(s) 617
BfmI CTRYAG 3 cut(s) 441, 621, 894
BglI GCCNNNNNGGC 2 cut(s) 436, 919
BisI GCNGC 4 cut(s) 278, 428, 621, 1083
BlsI GCNGC 4 cut(s) 279, 429, 622, 1084
Bme1390I CCNGG 2 cut(s) 298, 737
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 203, 437
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 2 cut(s) 298, 737
BmsI GCATC 5 cut(s) 334, 663, 685, 881, 889
BpmI CTGGAG 1 cut(s) 800
BpuMI CCSGG 1 cut(s) 737
Bsa29I ATCGAT 1 cut(s) 230
BsaJI CCNNGG 4 cut(s) 72, 735, 914, 954
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 5 cut(s) 73, 212, 573, 602, 771
Bse118I RCCGGY 1 cut(s) 971
BseAI TCCGGA 1 cut(s) 212
BseBI CCWGG 1 cut(s) 298
BseCI ATCGAT 1 cut(s) 230
BseDI CCNNGG 4 cut(s) 72, 735, 914, 954
BseGI GGATG 2 cut(s) 51, 468
BseLI CCNNNNNNNGG 5 cut(s) 73, 212, 573, 602, 771
BseMII CTCAG 1 cut(s) 702
BseRI GAGGAG 1 cut(s) 1100
BseXI GCAGC 3 cut(s) 414, 607, 1094
BshFI GGCC 3 cut(s) 280, 439, 922
BshVI ATCGAT 1 cut(s) 230
BsiHKAI GWGCWC 2 cut(s) 178, 661
BsiSI CCGG 4 cut(s) 35, 213, 737, 972
BslI CCNNNNNNNGG 5 cut(s) 73, 212, 573, 602, 771
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 3 cut(s) 280, 439, 922
Bsp1286I GDGCHC 2 cut(s) 178, 661
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 7 cut(s) 42, 76, 582, 700, 748, 760, 1120
BspACI CCGC 4 cut(s) 32, 277, 362, 515
BspANI GGCC 3 cut(s) 280, 439, 922
BspCNI CTCAG 1 cut(s) 703
BspDI ATCGAT 1 cut(s) 230
BspEI TCCGGA 1 cut(s) 212
BspHI TCATGA 2 cut(s) 151, 538
BspLI GGNNCC 1 cut(s) 65
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 4 cut(s) 84, 577, 755, 1115
BsrFI RCCGGY 1 cut(s) 971
BssAI RCCGGY 1 cut(s) 971
BssECI CCNNGG 4 cut(s) 72, 735, 914, 954
BssMI GATC 7 cut(s) 42, 76, 582, 700, 748, 760, 1120
BssSI CACGAG 1 cut(s) 158
BssT1I CCWWGG 2 cut(s) 72, 954
Bst2BI CACGAG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 6 cut(s) 87, 173, 203, 210, 314, 320
Bst6I CTCTTC 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 178, 432
BstDEI CTNAG 1 cut(s) 711
BstF5I GGATG 2 cut(s) 51, 468
BstKTI GATC 7 cut(s) 45, 79, 585, 703, 751, 763, 1123
BstMBI GATC 7 cut(s) 42, 76, 582, 700, 748, 760, 1120
BstMWI GCNNNNNNNGC 4 cut(s) 113, 368, 436, 919
BstNI CCWGG 1 cut(s) 298
BstNSI RCATGY 1 cut(s) 1009
BstSCI CCNGG 2 cut(s) 296, 735
BstSFI CTRYAG 3 cut(s) 441, 621, 894
BstV1I GCAGC 3 cut(s) 414, 607, 1094
BstX2I RGATCY 2 cut(s) 76, 582
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 2 cut(s) 76, 582
Bsu15I ATCGAT 1 cut(s) 230
BsuRI GGCC 3 cut(s) 280, 439, 922
BsuTUI ATCGAT 1 cut(s) 230
BtsCI GGATG 2 cut(s) 51, 468
BtsIMutI CAGTG 2 cut(s) 178, 330
Cac8I GCNNGC 2 cut(s) 178, 432
CciI TCATGA 2 cut(s) 151, 538
Cfr10I RCCGGY 1 cut(s) 971
Cfr13I GGNCC 2 cut(s) 203, 437
ClaI ATCGAT 1 cut(s) 230
Csp6I GTAC 4 cut(s) 188, 194, 478, 1062
CviAII CATG 6 cut(s) 91, 152, 539, 573, 839, 1006
CviQI GTAC 4 cut(s) 188, 194, 478, 1062
DdeI CTNAG 1 cut(s) 711
DpnI GATC 7 cut(s) 44, 78, 584, 702, 750, 762, 1122
DpnII GATC 7 cut(s) 42, 76, 582, 700, 748, 760, 1120
DraI TTTAAA 1 cut(s) 1072
EaeI YGGCCR 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Eco130I CCWWGG 2 cut(s) 72, 954
Eco147I AGGCCT 1 cut(s) 922
Eco32I GATATC 3 cut(s) 337, 452, 797
Eco47I GGWCC 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 437
EcoRI GAATTC 2 cut(s) 270, 405
EcoRII CCWGG 1 cut(s) 296
EcoRV GATATC 3 cut(s) 337, 452, 797
EcoT14I CCWWGG 2 cut(s) 72, 954
EcoT22I ATGCAT 1 cut(s) 678
ErhI CCWWGG 2 cut(s) 72, 954
FaeI CATG 6 cut(s) 94, 155, 542, 576, 842, 1009
FatI CATG 6 cut(s) 90, 151, 538, 572, 838, 1005
FblI GTMKAC 1 cut(s) 996
Fnu4HI GCNGC 4 cut(s) 278, 428, 621, 1083
FokI GGATG 2 cut(s) 38, 475
Fsp4HI GCNGC 4 cut(s) 278, 428, 621, 1083
FspBI CTAG 1 cut(s) 617
GluI GCNGC 4 cut(s) 278, 428, 621, 1083
GsuI CTGGAG 1 cut(s) 800
HaeIII GGCC 3 cut(s) 280, 439, 922
HapII CCGG 4 cut(s) 35, 213, 737, 972
Hin1II CATG 6 cut(s) 94, 155, 542, 576, 842, 1009
HinfI GANTC 9 cut(s) 218, 379, 388, 482, 535, 775, 835, 880, 1054
HpaII CCGG 4 cut(s) 35, 213, 737, 972
Hpy166II GTNNAC 2 cut(s) 206, 997
Hpy188I TCNGA 4 cut(s) 81, 456, 651, 918
Hpy188III TCNNGA 6 cut(s) 152, 160, 213, 539, 698, 779
Hpy8I GTNNAC 2 cut(s) 206, 997
Hpy99I CGWCG 3 cut(s) 131, 245, 388
HpyAV CCTTC 2 cut(s) 776, 1112
HpyCH4III ACNGT 6 cut(s) 87, 173, 203, 210, 314, 320
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 5 cut(s) 330, 347, 371, 623, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 368, 436, 919
HpyF3I CTNAG 1 cut(s) 711
HpySE526I ACGT 1 cut(s) 591
Hsp92II CATG 6 cut(s) 94, 155, 542, 576, 842, 1009
Kpn2I TCCGGA 1 cut(s) 212
Kzo9I GATC 7 cut(s) 42, 76, 582, 700, 748, 760, 1120
LmnI GCTCC 1 cut(s) 69
Lsp1109I GCAGC 3 cut(s) 414, 607, 1094
LweI GCATC 5 cut(s) 334, 663, 685, 881, 889
MaeI CTAG 1 cut(s) 617
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 6 cut(s) 160, 308, 314, 680, 691, 865
MalI GATC 7 cut(s) 44, 78, 584, 702, 750, 762, 1122
MboI GATC 7 cut(s) 42, 76, 582, 700, 748, 760, 1120
MboII GAAGA 3 cut(s) 412, 589, 592
MflI RGATCY 2 cut(s) 76, 582
MhlI GDGCHC 2 cut(s) 178, 661
MluCI AATT 6 cut(s) 270, 405, 503, 549, 687, 1073
MlyI GAGTC 2 cut(s) 769, 874
MmeI TCCRAC 2 cut(s) 30, 591
MnlI CCTC 9 cut(s) 167, 232, 606, 775, 785, 897, 912, 924, 1121
Mph1103I ATGCAT 1 cut(s) 678
MroI TCCGGA 1 cut(s) 212
MseI TTAA 6 cut(s) 48, 413, 528, 560, 686, 1071
MslI CAYNNNNRTG 1 cut(s) 737
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 4 cut(s) 35, 213, 737, 972
MspR9I CCNGG 2 cut(s) 298, 737
Mva1269I GAATGC 1 cut(s) 118
MvaI CCWGG 1 cut(s) 298
MwoI GCNNNNNNNGC 4 cut(s) 113, 368, 436, 919
NciI CCSGG 1 cut(s) 737
NdeII GATC 7 cut(s) 42, 76, 582, 700, 748, 760, 1120
NlaIII CATG 6 cut(s) 94, 155, 542, 576, 842, 1009
NlaIV GGNNCC 1 cut(s) 65
NmuCI GTSAC 2 cut(s) 160, 865
NsiI ATGCAT 1 cut(s) 678
NspI RCATGY 1 cut(s) 1009
OliI CACNNNNGTG 1 cut(s) 737
PagI TCATGA 2 cut(s) 151, 538
PceI AGGCCT 1 cut(s) 922
PcsI WCGNNNNNNNCGW 1 cut(s) 604
PctI GAATGC 1 cut(s) 118
PfeI GAWTC 7 cut(s) 218, 379, 388, 482, 535, 835, 1054
PflMI CCANNNNNTGG 1 cut(s) 573
PkrI GCNGC 4 cut(s) 279, 429, 622, 1084
PleI GAGTC 2 cut(s) 769, 874
PpsI GAGTC 2 cut(s) 769, 874
PsiI TTATAA 2 cut(s) 813, 948
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 2 cut(s) 203, 437
PstI CTGCAG 1 cut(s) 625
PsuI RGATCY 2 cut(s) 76, 582
RsaI GTAC 4 cut(s) 189, 195, 479, 1063
RsaNI GTAC 4 cut(s) 188, 194, 478, 1062
RseI CAYNNNNRTG 1 cut(s) 737
SaqAI TTAA 6 cut(s) 48, 413, 528, 560, 686, 1071
SatI GCNGC 4 cut(s) 278, 428, 621, 1083
Sau3AI GATC 7 cut(s) 42, 76, 582, 700, 748, 760, 1120
Sau96I GGNCC 2 cut(s) 203, 437
SchI GAGTC 2 cut(s) 769, 874
ScrFI CCNGG 2 cut(s) 298, 737
SduI GDGCHC 2 cut(s) 178, 661
SfaNI GCATC 5 cut(s) 334, 663, 685, 881, 889
SfcI CTRYAG 3 cut(s) 441, 621, 894
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 737
Sse9I AATT 6 cut(s) 270, 405, 503, 549, 687, 1073
SseBI AGGCCT 1 cut(s) 922
SsiI CCGC 4 cut(s) 32, 277, 362, 515
SspMI CTAG 1 cut(s) 617
StuI AGGCCT 1 cut(s) 922
StyD4I CCNGG 2 cut(s) 296, 735
StyI CCWWGG 2 cut(s) 72, 954
TaaI ACNGT 6 cut(s) 87, 173, 203, 210, 314, 320
TaiI ACGT 1 cut(s) 594
TaqI TCGA 5 cut(s) 230, 240, 386, 423, 769
TasI AATT 6 cut(s) 270, 405, 503, 549, 687, 1073
TatI WGTACW 1 cut(s) 187
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 7 cut(s) 218, 379, 388, 482, 535, 835, 1054
Tru1I TTAA 6 cut(s) 48, 413, 528, 560, 686, 1071
Tru9I TTAA 6 cut(s) 48, 413, 528, 560, 686, 1071
TscAI CASTG 2 cut(s) 178, 337
TseFI GTSAC 2 cut(s) 160, 865
TseI GCWGC 3 cut(s) 427, 620, 1082
Tsp45I GTSAC 2 cut(s) 160, 865
TspDTI ATGAA 6 cut(s) 79, 127, 555, 866, 917, 1094
TspGWI ACGGA 2 cut(s) 258, 372
TspRI CASTG 2 cut(s) 178, 337
Van91I CCANNNNNTGG 1 cut(s) 573
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 5 cut(s) 270, 405, 503, 549, 1073
XceI RCATGY 1 cut(s) 1009
XmiI GTMKAC 1 cut(s) 996
XspI CTAG 1 cut(s) 617
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.