pycom16g17160

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000424
Physical Location & Seq
Reverse (-)
13235546 .. 13237095
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g17160.2

Sequence Viewer

Length: 846 bp
ATGTTGGGCTGCTCGGTTAATGGTGTGGTTTGTATTCACGACAGTGAATGTACAAATGTTTGTTTGTGGAACACGTCAATTCAAAAGTTCAAGAAGATTCCCCTTCCAACGTTGGAGCATCAGCCACCATCATATTTCAACAGGTACACTCTCTTCGGGTTCGGATATGATTCAGCAAATGATGACTTTAAAGCTTCGCGATTTACGCAGTTTGAGAACAGAAAGAGAGAGTCTGTGGATTCCCAAGTCGGCGTTTATAGTCTAAAATCGAACTCATGGAAAAAGATTCAGAGCTTGCCTTGCCATGGTTTTTCCGTTCATAGGCGTGAGATTGTTTTTACGAACGGTGCTCTGTGTTGGGTGATGTGGAAAGATAACAGTCGGTGCATAATTCTAACCCTTGATCTTGCCGATGAGAATTATCGGGAGTTTCACACCGCAGTGGACGAGGACGACAATTATCTTATGAATTTGGTGGTTTTAAGGGGCTCTCTATGCGTTTTTGTTAATAATAGGAGCAGTAGACATGAAGTTTGGATTATGAAGGAGTACGGAACGTCTGACTCTTGGACCTTGCTCTATTCTATTGGTGTGGAAACTGGTCCGGAAACTGTGCCTTGGTGGTTTGATCATTGTGAACCTTTGGGGTTCTCAAAGAACGGTGAAATGGTTCTTTTGAAGAAAGGTGAGGGTGCGCTTGTTTGGTTTGATTTAGAGCAGAAAAATAGTAACGAAGTCTACAGTGGGGGTCTGCCACATGTCTTTAAAGTAACCATTTGCTTAGGGAGCCTTTCTCTTCTTGATGGTGGCTCCGTCGTGAGCGAAGAAGGTACTTGGGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

282

Amino Acids

31.96

Weight (kDa)

5.51

Isoelectric Point (pI)

28.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 523, 738
AccII CGCG 1 cut(s) 199
AccIII TCCGGA 1 cut(s) 604
AciI CCGC 1 cut(s) 438
AclI AACGTT 1 cut(s) 110
AcsI RAATTY 1 cut(s) 469
AfaI GTAC 4 cut(s) 52, 146, 551, 832
AfiI CCNNNNNNNGG 2 cut(s) 305, 321
AflIII ACRYGT 2 cut(s) 72, 757
AgsI TTSAA 4 cut(s) 83, 91, 139, 679
AjiI CACGTC 1 cut(s) 75
AleI CACNNNNGTG 2 cut(s) 42, 440
AluBI AGCT 2 cut(s) 194, 294
AluI AGCT 2 cut(s) 194, 294
Alw21I GWGCWC 1 cut(s) 352
Aor13HI TCCGGA 1 cut(s) 604
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 469
ArsI GACNNNNNNTTYG 2 cut(s) 516, 548
Asp700I GAANNNNTTC 1 cut(s) 669
AspLEI GCGC 1 cut(s) 697
AspS9I GGNCC 2 cut(s) 570, 602
AsuHPI GGTGA 3 cut(s) 373, 674, 698
AvaII GGWCC 2 cut(s) 570, 602
BaeI ACNNNNGTAYC 1 cut(s) 822
BanII GRGCYC 1 cut(s) 491
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
Bbv12I GWGCWC 1 cut(s) 352
BccI CCATC 2 cut(s) 136, 797
BclI TGATCA 1 cut(s) 628
BfmI CTRYAG 1 cut(s) 739
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme18I GGWCC 2 cut(s) 570, 602
BmgBI CACGTC 1 cut(s) 75
BmgT120I GGNCC 2 cut(s) 570, 602
BmiI GGNNCC 2 cut(s) 788, 811
BmsI GCATC 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 778, 810
Bpu10I CCTNAGC 1 cut(s) 781
BsaJI CCNNGG 2 cut(s) 304, 617
BsaWI WCCGGW 1 cut(s) 604
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 321
Bse1I ACTGG 1 cut(s) 604
BseAI TCCGGA 1 cut(s) 604
BseDI CCNNGG 2 cut(s) 304, 617
BseLI CCNNNNNNNGG 2 cut(s) 305, 321
BseNI ACTGG 1 cut(s) 604
Bsh1236I CGCG 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 352
BsiSI CCGG 1 cut(s) 605
BslI CCNNNNNNNGG 2 cut(s) 305, 321
Bsp1286I GDGCHC 2 cut(s) 352, 491
Bsp13I TCCGGA 1 cut(s) 604
Bsp1407I TGTACA 1 cut(s) 50
Bsp143I GATC 2 cut(s) 403, 628
Bsp19I CCATGG 1 cut(s) 304
Bsp68I TCGCGA 1 cut(s) 199
BspACI CCGC 1 cut(s) 438
BspEI TCCGGA 1 cut(s) 604
BspFNI CGCG 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 788, 811
BsrGI TGTACA 1 cut(s) 50
BsrI ACTGG 1 cut(s) 604
BssECI CCNNGG 2 cut(s) 304, 617
BssMI GATC 2 cut(s) 403, 628
BssT1I CCWWGG 2 cut(s) 304, 617
Bst4CI ACNGT 6 cut(s) 44, 347, 380, 613, 662, 743
Bst6I CTCTTC 2 cut(s) 158, 801
BstAUI TGTACA 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 781
BstDSI CCRYGG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 697
BstKTI GATC 2 cut(s) 406, 631
BstMBI GATC 2 cut(s) 403, 628
BstMWI GCNNNNNNNGC 4 cut(s) 205, 300, 495, 786
BstNSI RCATGY 1 cut(s) 761
BstSFI CTRYAG 1 cut(s) 739
BstUI CGCG 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 304
BtrI CACGTC 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 3 cut(s) 49, 447, 748
BtuMI TCGCGA 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 296
CfoI GCGC 1 cut(s) 697
Cfr13I GGNCC 2 cut(s) 570, 602
Csp6I GTAC 4 cut(s) 51, 145, 550, 831
CviAII CATG 4 cut(s) 276, 305, 527, 758
CviJI RGCY 7 cut(s) 9, 124, 194, 294, 489, 789, 810
CviKI_1 RGCY 7 cut(s) 9, 124, 194, 294, 489, 789, 810
CviQI GTAC 4 cut(s) 51, 145, 550, 831
DdeI CTNAG 1 cut(s) 781
DpnI GATC 2 cut(s) 405, 630
DpnII GATC 2 cut(s) 403, 628
DraI TTTAAA 2 cut(s) 190, 766
Eam1104I CTCTTC 2 cut(s) 158, 801
EarI CTCTTC 2 cut(s) 158, 801
Eco130I CCWWGG 2 cut(s) 304, 617
Eco24I GRGCYC 1 cut(s) 491
Eco47I GGWCC 2 cut(s) 570, 602
EcoT14I CCWWGG 2 cut(s) 304, 617
EcoT38I GRGCYC 1 cut(s) 491
ErhI CCWWGG 2 cut(s) 304, 617
FaeI CATG 4 cut(s) 279, 308, 530, 761
FatI CATG 4 cut(s) 275, 304, 526, 757
FbaI TGATCA 1 cut(s) 628
FblI GTMKAC 2 cut(s) 523, 738
Fnu4HI GCNGC 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 491
Fsp4HI GCNGC 1 cut(s) 10
GlaI GCGC 1 cut(s) 696
GluI GCNGC 1 cut(s) 10
HapII CCGG 1 cut(s) 605
HhaI GCGC 1 cut(s) 697
Hin1II CATG 4 cut(s) 279, 308, 530, 761
Hin6I GCGC 1 cut(s) 695
HinP1I GCGC 1 cut(s) 695
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 6 cut(s) 97, 170, 230, 239, 286, 563
HpaII CCGG 1 cut(s) 605
HphI GGTGA 3 cut(s) 373, 674, 698
Hpy166II GTNNAC 5 cut(s) 147, 445, 524, 638, 739
Hpy188I TCNGA 3 cut(s) 164, 291, 562
Hpy188III TCNNGA 7 cut(s) 38, 91, 198, 425, 605, 800, 817
Hpy8I GTNNAC 5 cut(s) 147, 445, 524, 638, 739
Hpy99I CGWCG 1 cut(s) 818
HpyAV CCTTC 3 cut(s) 113, 538, 821
HpyCH4III ACNGT 6 cut(s) 44, 347, 380, 613, 662, 743
HpyCH4IV ACGT 3 cut(s) 74, 110, 557
HpyCH4V TGCA 1 cut(s) 387
HpyF10VI GCNNNNNNNGC 4 cut(s) 205, 300, 495, 786
HpyF3I CTNAG 1 cut(s) 781
HpySE526I ACGT 3 cut(s) 74, 110, 557
Hsp92II CATG 4 cut(s) 279, 308, 530, 761
HspAI GCGC 1 cut(s) 695
Kpn2I TCCGGA 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 2 cut(s) 403, 628
LmnI GCTCC 4 cut(s) 115, 516, 786, 815
LpnPI CCDG 3 cut(s) 127, 585, 618
LweI GCATC 1 cut(s) 127
MaeII ACGT 3 cut(s) 74, 110, 557
MaeIII GTNAC 2 cut(s) 728, 769
MalI GATC 2 cut(s) 405, 630
MboI GATC 2 cut(s) 403, 628
MboII GAAGA 5 cut(s) 106, 145, 691, 788, 836
MhlI GDGCHC 2 cut(s) 352, 491
MluCI AATT 5 cut(s) 78, 390, 418, 457, 469
MlyI GAGTC 2 cut(s) 239, 557
MmeI TCCRAC 3 cut(s) 93, 131, 820
MnlI CCTC 2 cut(s) 442, 682
MroI TCCGGA 1 cut(s) 604
MroXI GAANNNNTTC 1 cut(s) 669
MseI TTAA 5 cut(s) 18, 189, 482, 507, 765
MslI CAYNNNNRTG 3 cut(s) 42, 324, 440
MspI CCGG 1 cut(s) 605
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 4 cut(s) 205, 300, 495, 786
NcoI CCATGG 1 cut(s) 304
NdeII GATC 2 cut(s) 403, 628
NlaIII CATG 4 cut(s) 279, 308, 530, 761
NlaIV GGNNCC 2 cut(s) 788, 811
NruI TCGCGA 1 cut(s) 199
NspI RCATGY 1 cut(s) 761
OliI CACNNNNGTG 2 cut(s) 42, 440
PciI ACATGT 1 cut(s) 757
PdmI GAANNNNTTC 1 cut(s) 669
PfeI GAWTC 4 cut(s) 97, 170, 239, 286
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 2 cut(s) 238, 557
PpsI GAGTC 2 cut(s) 238, 557
PscI ACATGT 1 cut(s) 757
Psp1406I AACGTT 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 788, 811
PspPI GGNCC 2 cut(s) 570, 602
RruI TCGCGA 1 cut(s) 199
RsaI GTAC 4 cut(s) 52, 146, 551, 832
RsaNI GTAC 4 cut(s) 51, 145, 550, 831
RseI CAYNNNNRTG 3 cut(s) 42, 324, 440
SaqAI TTAA 5 cut(s) 18, 189, 482, 507, 765
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 403, 628
Sau96I GGNCC 2 cut(s) 570, 602
SchI GAGTC 2 cut(s) 239, 557
SduI GDGCHC 2 cut(s) 352, 491
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 739
SinI GGWCC 2 cut(s) 570, 602
SmiMI CAYNNNNRTG 3 cut(s) 42, 324, 440
Sse9I AATT 5 cut(s) 78, 390, 418, 457, 469
SsiI CCGC 1 cut(s) 438
StyI CCWWGG 2 cut(s) 304, 617
TaaI ACNGT 6 cut(s) 44, 347, 380, 613, 662, 743
TaiI ACGT 3 cut(s) 77, 113, 560
TaqI TCGA 1 cut(s) 269
TasI AATT 5 cut(s) 78, 390, 418, 457, 469
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 4 cut(s) 97, 170, 239, 286
Tru1I TTAA 5 cut(s) 18, 189, 482, 507, 765
Tru9I TTAA 5 cut(s) 18, 189, 482, 507, 765
TscAI CASTG 3 cut(s) 49, 447, 748
TseI GCWGC 1 cut(s) 9
TspDTI ATGAA 4 cut(s) 308, 482, 543, 557
TspGWI ACGGA 3 cut(s) 304, 567, 802
TspRI CASTG 3 cut(s) 49, 447, 748
VpaK11BI GGWCC 2 cut(s) 570, 602
XapI RAATTY 1 cut(s) 469
XceI RCATGY 1 cut(s) 761
XmiI GTMKAC 2 cut(s) 523, 738
XmnI GAANNNNTTC 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.