Prupe.1G025400_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000424
Physical Location & Seq
Reverse (-)
1750070 .. 1752246
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G025400.1

Sequence Viewer

Length: 699 bp
ATGTCAAACATCCCACCGGAGCTAATCTTTGACATCCTCTTACAGCTCCAACTGAAGGATTTGATCCGATACACATGTGTTTCCAAAGCTTGGCATGCTTTCATCCACAACCAAGACTTCATCAAAGCGCATCTCAAACGCTCCATCAAAACCAACTCTACTCGCACCATTTTACTGGAGGCTCCTCCCTCATATTTATTTTCATTGCCTTTTGACAACGATGAGACGCTCGGGACAGCCACGATAATCGGGTGTTTGATTCAGTCAAAAGGCCCAGGAAAGTATACTACCGGAATAGTGGGCTACGCCAATGGTCTGCTGAAGAAGATTCCCTTAATAACCCATGAACCGCATGCACATCCATCACCAAAATATGGATTCGGGTACAATTCAACCAATGACGACTATAAATTAGTGGGGATTATTAGGAAGCCTGCTAATGAGTATGGCTATGTTACCGTGAGTTATGAAATCCTAACACTTGATCTTGCAAGTGAGAAATATCGGGAGTTTTCCATCCCAGTGGATAGGATTGATAACATTGAACGTTCTGGGCTGGATTTGGACGTCTTGGGAGACCATCTGTGTATTCGTGTTAATCGTTTCATGTCTAGAAGGGAGGCTTGGATTATGAAGGAATATGGAGGGACAGAATCTTGGAGCCTGCTTTATTCTATTGACAATGGGACCGGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

233

Amino Acids

26.31

Weight (kDa)

6.65

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 570
AccB7I CCANNNNNTGG 2 cut(s) 90, 374
AccI GTMKAC 1 cut(s) 284
AciI CCGC 1 cut(s) 350
AclI AACGTT 1 cut(s) 547
AclWI GGATC 1 cut(s) 58
AcuI CTGAAG 2 cut(s) 74, 341
AcyI GRCGYC 1 cut(s) 567
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 3 cut(s) 55, 90, 374
AflIII ACRYGT 1 cut(s) 74
AgeI ACCGGT 1 cut(s) 689
AgsI TTSAA 2 cut(s) 393, 545
AjnI CCWGG 1 cut(s) 274
AjuI GAANNNNNNNTTGG 2 cut(s) 607, 639
AluBI AGCT 3 cut(s) 22, 46, 89
AluI AGCT 3 cut(s) 22, 46, 89
Alw26I GTCTC 2 cut(s) 218, 570
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 1 cut(s) 271
AsiGI ACCGGT 1 cut(s) 689
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 272, 687
AsuHPI GGTGA 1 cut(s) 357
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 687
BaeI ACNNNNGTAYC 2 cut(s) 61, 94
BccI CCATC 4 cut(s) 152, 370, 524, 588
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 2 cut(s) 218, 570
BfaI CTAG 1 cut(s) 612
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 687
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 272, 687
BmiI GGNNCC 3 cut(s) 183, 662, 688
BmrFI CCNGG 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 515
BmsI GCATC 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 515
BpmI CTGGAG 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 274
BsaWI WCCGGW 3 cut(s) 16, 290, 689
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 90, 374
Bse118I RCCGGY 1 cut(s) 689
Bse1I ACTGG 2 cut(s) 180, 521
Bse3DI GCAATG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 5 cut(s) 9, 33, 102, 358, 516
BseLI CCNNNNNNNGG 3 cut(s) 55, 90, 374
BseMI GCAATG 1 cut(s) 203
BseNI ACTGG 2 cut(s) 180, 521
BseRI GAGGAG 1 cut(s) 174
BshFI GGCC 1 cut(s) 273
BshTI ACCGGT 1 cut(s) 689
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 3 cut(s) 17, 291, 690
BslFI GGGAC 2 cut(s) 247, 661
BslI CCNNNNNNNGG 3 cut(s) 55, 90, 374
BsmAI GTCTC 2 cut(s) 218, 570
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 2 cut(s) 247, 661
BsnI GGCC 1 cut(s) 273
Bso31I GGTCTC 1 cut(s) 570
BsoBI CYCGRG 1 cut(s) 230
Bsp143I GATC 2 cut(s) 63, 484
BspACI CCGC 1 cut(s) 350
BspANI GGCC 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 183, 662, 688
BspPI GGATC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 570
BsrDI GCAATG 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 689
BsrI ACTGG 2 cut(s) 180, 521
BssAI RCCGGY 1 cut(s) 689
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 2 cut(s) 63, 484
BssNAI GTATAC 1 cut(s) 285
BssNI GRCGYC 1 cut(s) 567
Bst1107I GTATAC 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 460
BstACI GRCGYC 1 cut(s) 567
BstC8I GCNNGC 4 cut(s) 96, 354, 435, 665
BstF5I GGATG 5 cut(s) 9, 33, 102, 358, 516
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 2 cut(s) 66, 487
BstMAI GTCTC 2 cut(s) 218, 570
BstMBI GATC 2 cut(s) 63, 484
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 3 cut(s) 78, 98, 356
BstSCI CCNGG 1 cut(s) 274
BstXI CCANNNNNNTGG 2 cut(s) 175, 523
BstZ17I GTATAC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 273
BtsCI GGATG 5 cut(s) 9, 33, 102, 358, 516
BtsIMutI CAGTG 1 cut(s) 528
Cac8I GCNNGC 4 cut(s) 96, 354, 435, 665
CfoI GCGC 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 689
Cfr13I GGNCC 2 cut(s) 272, 687
CseI GACGC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 385
CspAI ACCGGT 1 cut(s) 689
CviAII CATG 5 cut(s) 75, 95, 344, 353, 607
CviQI GTAC 1 cut(s) 385
DpnI GATC 2 cut(s) 65, 486
DpnII GATC 2 cut(s) 63, 484
Eco31I GGTCTC 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 687
Eco57I CTGAAG 2 cut(s) 74, 341
Eco88I CYCGRG 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 274
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 5 cut(s) 78, 98, 347, 356, 610
FalI AAGNNNNNCTT 4 cut(s) 317, 349, 607, 639
FaqI GGGAC 2 cut(s) 247, 661
FatI CATG 5 cut(s) 74, 94, 343, 352, 606
FblI GTMKAC 1 cut(s) 284
FokI GGATG 4 cut(s) 20, 89, 345, 503
FspBI CTAG 1 cut(s) 612
GlaI GCGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 273
HapII CCGG 3 cut(s) 17, 291, 690
HgaI GACGC 1 cut(s) 235
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 5 cut(s) 78, 98, 347, 356, 610
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 4 cut(s) 259, 328, 378, 653
HpaII CCGG 3 cut(s) 17, 291, 690
HphI GGTGA 1 cut(s) 357
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 232, 506, 612
Hpy8I GTNNAC 1 cut(s) 285
HpyAV CCTTC 3 cut(s) 49, 609, 628
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 2 cut(s) 547, 567
HpyCH4V TGCA 2 cut(s) 356, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpySE526I ACGT 2 cut(s) 547, 567
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 5 cut(s) 78, 98, 347, 356, 610
HspAI GCGC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 63, 484
LmnI GCTCC 5 cut(s) 19, 51, 146, 187, 660
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 612
MaeII ACGT 2 cut(s) 547, 567
MaeIII GTNAC 1 cut(s) 454
MalI GATC 2 cut(s) 65, 486
MboI GATC 2 cut(s) 63, 484
MboII GAAGA 2 cut(s) 334, 337
MluCI AATT 2 cut(s) 388, 410
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 6 cut(s) 47, 172, 195, 199, 613, 638
MseI TTAA 2 cut(s) 335, 597
MslI CAYNNNNRTG 1 cut(s) 521
MspI CCGG 3 cut(s) 17, 291, 690
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 2 cut(s) 63, 484
NlaIII CATG 5 cut(s) 78, 98, 347, 356, 610
NlaIV GGNNCC 3 cut(s) 183, 662, 688
NspI RCATGY 3 cut(s) 78, 98, 356
PaeI GCATGC 2 cut(s) 98, 356
PciI ACATGT 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 598
PfeI GAWTC 4 cut(s) 259, 328, 378, 653
PflMI CCANNNNNTGG 2 cut(s) 90, 374
PinAI ACCGGT 1 cut(s) 689
PscI ACATGT 1 cut(s) 74
Psp1406I AACGTT 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 3 cut(s) 183, 662, 688
PspPI GGNCC 2 cut(s) 272, 687
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 521
SaqAI TTAA 2 cut(s) 335, 597
Sau3AI GATC 2 cut(s) 63, 484
Sau96I GGNCC 2 cut(s) 272, 687
ScrFI CCNGG 1 cut(s) 276
SetI ASST 5 cut(s) 24, 48, 91, 550, 570
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 1 cut(s) 687
SmiMI CAYNNNNRTG 1 cut(s) 521
SphI GCATGC 2 cut(s) 98, 356
Sse9I AATT 2 cut(s) 388, 410
SsiI CCGC 1 cut(s) 350
SspMI CTAG 1 cut(s) 612
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 2 cut(s) 550, 570
TasI AATT 2 cut(s) 388, 410
TfiI GAWTC 4 cut(s) 259, 328, 378, 653
Tru1I TTAA 2 cut(s) 335, 597
Tru9I TTAA 2 cut(s) 335, 597
TscAI CASTG 1 cut(s) 528
TspDTI ATGAA 7 cut(s) 91, 109, 192, 360, 483, 595, 647
TspRI CASTG 1 cut(s) 528
Van91I CCANNNNNTGG 2 cut(s) 90, 374
VpaK11BI GGWCC 1 cut(s) 687
XbaI TCTAGA 1 cut(s) 611
XceI RCATGY 3 cut(s) 78, 98, 356
XmiI GTMKAC 1 cut(s) 284
XspI CTAG 1 cut(s) 612
ZraI GACGTC 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.