RLG00000011832

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000424
Physical Location & Seq
Reverse (-)
13135772 .. 13136998
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011832

Sequence Viewer

Length: 1227 bp
ATGGCTCCTGTTCCTACACCTTTAACGATTCGCAGCTTGCCATCTGGGATTGTCGAAGACATTCTTTTACGGCTCTCGCCCAAAGAATTGATTAGATGTCTGTGTGTTTTGAAGTCGTGGAATGCTTTAATTCGGAGCGAACAGTTCTACAAGGCTCACCTCAAGAGGTCTCAGGAAACCAAAAGTTACAGAACGCTTGTAACGGCGAAGGCAAGGACAGACCCAGAGCAAGAGGGGACAGATTTCTTTCAATGTGCCTTTTATGGGAGAGACACATTCAGCAATGCTCTCAAGATTGCACAACCTTTAAGACATCCTAGGAGAGATACTGAGATTGTGGGATACTATGATGGGTTGGTTTGCATACGGAACATATATTATCATCGAGATCTGGCAATTTGGAATCCCTCCATACAGAAATTCAAGAGAATTCCCTCTGCACCCTTCGAGGTGCCAGCAGGGACCAAGGCCAGAGAGCCCAAGTATGGGTTTGGATATGATATATCCAATGATGACTACAAAGTTGTTGGAATTGTGGAACTTGAAATTGATAAAAGGGCTATAGTGGGTTCGGAAGTGAAGGTTTACAGTCTGAAATCCAACTCTTGGAAGAAGATAGAAAGCTTGTCTTGCACGTGGAGTTCATCACGGGCCGTTCCTCTAAAGGGTGCTCTACATTGGTTCGGGAAACTTGAATCATCTTCCTACGGTTTAAGAGTTCTAATTCTTGATTTTGAAAAAGAAATTTTCAGGGAGTTCCCCACTCCATTTGAGGTCCAGTTGGCAATGGGTTTGGAAGTCTTGAATGGAAAGCTCTGCATCGGTGTTTTTCATGACTTAAAGCAACATGATGTGTGGGAAATGGAGGAATATGGAGTGGCTGAATCTTGGACTCATTTGTATACTATTAAGGAGGGGGTTGTGACTTGGACATTTGAGTATTGCACACCTTTGGTCTTATCAAACAATGGTCAAAGGGTTCTTTTTCATGATAAATCCGATTTGACCGATGGAAACCTTTTCTGGTATGACACAGAGAAAAACACGGGAAAAAGGGTTCAAATTCCTGGTATGCCCCGCGACTTTGTAGCGGCTATATGTGTAGCCAACCTTGGTCTCCTTGATGGTGATCCGGTGATTGTTCGGAGGCAGCAACAAGTCCTTCCTATGAAGAGGAAAATTGCAAGCAGGCAAATTTCATACTTGTTTATTTCAACATTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

409

Amino Acids

46.83

Weight (kDa)

8.82

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 10 - 52 5.5e-06 F-box-like
F-box PF00646 12 - 51 7.5e-06 F-box domain
b-prop_At3g26010-like PF24750 81 - 245 1.8e-06 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 103 - 361 1.3e-20 F-box associated beta propeller domain
FBA_1 PF07734 109 - 330 4.9e-23 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 451
AccB7I CCANNNNNTGG 1 cut(s) 606
AccI GTMKAC 1 cut(s) 902
AccII CGCG 1 cut(s) 1080
AciI CCGC 2 cut(s) 1078, 1091
AclWI GGATC 1 cut(s) 1124
AcsI RAATTY 5 cut(s) 419, 429, 744, 1062, 1194
AcvI CACGTG 1 cut(s) 636
AfiI CCNNNNNNNGG 5 cut(s) 264, 485, 486, 606, 665
AgsI TTSAA 9 cut(s) 112, 251, 424, 545, 695, 737, 805, 1061, 1215
AjnI CCWGG 1 cut(s) 1066
AloI GAACNNNNNNTCC 2 cut(s) 1041, 1073
AluBI AGCT 3 cut(s) 36, 624, 814
AluI AGCT 3 cut(s) 36, 624, 814
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 3 cut(s) 174, 264, 1121
AlwI GGATC 1 cut(s) 1124
AoxI GGCC 2 cut(s) 468, 651
ApeKI GCWGC 2 cut(s) 33, 1150
ApoI RAATTY 5 cut(s) 419, 429, 744, 1062, 1194
Asp700I GAANNNNTTC 1 cut(s) 60
AspA2I CCTAGG 1 cut(s) 317
AspS9I GGNCC 3 cut(s) 462, 651, 775
AsuHPI GGTGA 3 cut(s) 149, 1139, 1147
AvaII GGWCC 2 cut(s) 462, 775
AvrII CCTAGG 1 cut(s) 317
BanI GGYRCC 1 cut(s) 451
BanII GRGCYC 1 cut(s) 480
BbrPI CACGTG 1 cut(s) 636
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 2 cut(s) 45, 1162
BccI CCATC 4 cut(s) 49, 344, 1004, 1118
BceAI ACGGC 3 cut(s) 86, 219, 638
BciT130I CCWGG 1 cut(s) 1068
BciVI GTATCC 1 cut(s) 335
BcoDI GTCTC 3 cut(s) 174, 264, 1121
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 561
BfuI GTATCC 1 cut(s) 335
BglII AGATCT 1 cut(s) 388
BisI GCNGC 3 cut(s) 34, 1092, 1151
BlnI CCTAGG 1 cut(s) 317
BlsI GCNGC 3 cut(s) 35, 1093, 1152
Bme1390I CCNGG 1 cut(s) 1068
Bme18I GGWCC 2 cut(s) 462, 775
BmgT120I GGNCC 3 cut(s) 462, 651, 775
BmiI GGNNCC 3 cut(s) 6, 453, 463
BmrFI CCNGG 1 cut(s) 1068
BmsI GCATC 1 cut(s) 828
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 2 cut(s) 146, 275
BsaAI YACGTR 1 cut(s) 636
BsaBI GATNNNNATC 1 cut(s) 1128
BsaI GGTCTC 2 cut(s) 174, 1121
BsaJI CCNNGG 3 cut(s) 317, 465, 1111
BsaWI WCCGGW 1 cut(s) 1132
Bsc4I CCNNNNNNNGG 5 cut(s) 264, 485, 486, 606, 665
Bse1I ACTGG 1 cut(s) 778
Bse3DI GCAATG 2 cut(s) 289, 792
Bse8I GATNNNNATC 1 cut(s) 1128
BseBI CCWGG 1 cut(s) 1068
BseDI CCNNGG 3 cut(s) 317, 465, 1111
BseGI GGATG 1 cut(s) 313
BseJI GATNNNNATC 1 cut(s) 1128
BseLI CCNNNNNNNGG 5 cut(s) 264, 485, 486, 606, 665
BseMI GCAATG 2 cut(s) 289, 792
BseMII CTCAG 2 cut(s) 185, 321
BseNI ACTGG 1 cut(s) 778
BseXI GCAGC 2 cut(s) 45, 1162
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 1080
BshFI GGCC 2 cut(s) 470, 653
BshNI GGYRCC 1 cut(s) 451
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 1 cut(s) 1133
BslFI GGGAC 2 cut(s) 250, 475
BslI CCNNNNNNNGG 5 cut(s) 264, 485, 486, 606, 665
BsmAI GTCTC 3 cut(s) 174, 264, 1121
BsmFI GGGAC 2 cut(s) 250, 475
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 2 cut(s) 470, 653
Bso31I GGTCTC 2 cut(s) 174, 1121
Bsp1286I GDGCHC 2 cut(s) 480, 673
Bsp143I GATC 2 cut(s) 388, 1129
BspACI CCGC 2 cut(s) 1078, 1091
BspANI GGCC 2 cut(s) 470, 653
BspCNI CTCAG 2 cut(s) 184, 322
BspFNI CGCG 1 cut(s) 1080
BspHI TCATGA 2 cut(s) 832, 988
BspLI GGNNCC 3 cut(s) 6, 453, 463
BspPI GGATC 1 cut(s) 1124
BspT107I GGYRCC 1 cut(s) 451
BspTNI GGTCTC 2 cut(s) 174, 1121
BsrDI GCAATG 2 cut(s) 289, 792
BsrI ACTGG 1 cut(s) 778
BssECI CCNNGG 3 cut(s) 317, 465, 1111
BssMI GATC 2 cut(s) 388, 1129
BssNAI GTATAC 1 cut(s) 903
BssT1I CCWWGG 3 cut(s) 317, 465, 1111
Bst1107I GTATAC 1 cut(s) 903
Bst2UI CCWGG 1 cut(s) 1068
Bst4CI ACNGT 3 cut(s) 144, 590, 710
Bst6I CTCTTC 1 cut(s) 1166
BstBAI YACGTR 1 cut(s) 636
BstC8I GCNNGC 4 cut(s) 38, 456, 1186, 1190
BstDEI CTNAG 2 cut(s) 171, 330
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 1080
BstKTI GATC 2 cut(s) 391, 1132
BstMAI GTCTC 3 cut(s) 174, 264, 1121
BstMBI GATC 2 cut(s) 388, 1129
BstMWI GCNNNNNNNGC 1 cut(s) 630
BstNI CCWGG 1 cut(s) 1068
BstSCI CCNGG 1 cut(s) 1066
BstSFI CTRYAG 1 cut(s) 561
BstUI CGCG 1 cut(s) 1080
BstV1I GCAGC 2 cut(s) 45, 1162
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BstZ17I GTATAC 1 cut(s) 903
BsuI GTATCC 1 cut(s) 335
BsuRI GGCC 2 cut(s) 470, 653
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 4 cut(s) 38, 456, 1186, 1190
CciI TCATGA 2 cut(s) 832, 988
Cfr13I GGNCC 3 cut(s) 462, 651, 775
CspCI CAANNNNNGTGG 2 cut(s) 751, 786
CviAII CATG 3 cut(s) 833, 848, 989
DdeI CTNAG 2 cut(s) 171, 330
DpnI GATC 2 cut(s) 390, 1131
DpnII GATC 2 cut(s) 388, 1129
Eam1104I CTCTTC 1 cut(s) 1166
EarI CTCTTC 1 cut(s) 1166
Eco130I CCWWGG 3 cut(s) 317, 465, 1111
Eco24I GRGCYC 1 cut(s) 480
Eco31I GGTCTC 2 cut(s) 174, 1121
Eco47I GGWCC 2 cut(s) 462, 775
Eco72I CACGTG 1 cut(s) 636
EcoRI GAATTC 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 1066
EcoT14I CCWWGG 3 cut(s) 317, 465, 1111
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 3 cut(s) 317, 465, 1111
FaeI CATG 3 cut(s) 836, 851, 992
FalI AAGNNNNNCTT 4 cut(s) 48, 80, 613, 645
FaqI GGGAC 2 cut(s) 250, 475
FatI CATG 3 cut(s) 832, 847, 988
FauI CCCGC 1 cut(s) 1085
FblI GTMKAC 1 cut(s) 902
Fnu4HI GCNGC 3 cut(s) 34, 1092, 1151
FokI GGATG 1 cut(s) 300
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 3 cut(s) 34, 1092, 1151
FspBI CTAG 1 cut(s) 318
GluI GCNGC 3 cut(s) 34, 1092, 1151
HaeIII GGCC 2 cut(s) 470, 653
HapII CCGG 1 cut(s) 1133
Hin1II CATG 3 cut(s) 836, 851, 992
HindIII AAGCTT 1 cut(s) 622
HinfI GANTC 5 cut(s) 28, 403, 695, 884, 892
HpaII CCGG 1 cut(s) 1133
HphI GGTGA 3 cut(s) 149, 1139, 1147
Hpy166II GTNNAC 2 cut(s) 586, 903
Hpy188I TCNGA 5 cut(s) 135, 574, 594, 1000, 1146
Hpy8I GTNNAC 2 cut(s) 586, 903
HpyAV CCTTC 4 cut(s) 202, 454, 574, 1172
HpyCH4III ACNGT 3 cut(s) 144, 590, 710
HpyCH4IV ACGT 1 cut(s) 635
HpyCH4V TGCA 7 cut(s) 299, 363, 440, 633, 819, 945, 1184
HpyF10VI GCNNNNNNNGC 1 cut(s) 630
HpyF3I CTNAG 2 cut(s) 171, 330
HpySE526I ACGT 1 cut(s) 635
Hsp92II CATG 3 cut(s) 836, 851, 992
Kzo9I GATC 2 cut(s) 388, 1129
LmnI GCTCC 2 cut(s) 10, 135
Lsp1109I GCAGC 2 cut(s) 45, 1162
LweI GCATC 1 cut(s) 828
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 635
MaeIII GTNAC 3 cut(s) 185, 199, 922
MalI GATC 2 cut(s) 390, 1131
MboI GATC 2 cut(s) 388, 1129
MboII GAAGA 5 cut(s) 68, 622, 625, 693, 1183
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 2 cut(s) 480, 673
MlyI GAGTC 1 cut(s) 886
MmeI TCCRAC 2 cut(s) 508, 624
MroXI GAANNNNTTC 1 cut(s) 60
MseI TTAA 7 cut(s) 23, 128, 308, 713, 839, 909, 1225
MspI CCGG 1 cut(s) 1133
MspR9I CCNGG 1 cut(s) 1068
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 1 cut(s) 1068
MvnI CGCG 1 cut(s) 1080
MwoI GCNNNNNNNGC 1 cut(s) 630
NdeII GATC 2 cut(s) 388, 1129
NlaIII CATG 3 cut(s) 836, 851, 992
NlaIV GGNNCC 3 cut(s) 6, 453, 463
NmuCI GTSAC 1 cut(s) 922
PagI TCATGA 2 cut(s) 832, 988
PctI GAATGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 4 cut(s) 28, 403, 695, 884
PflMI CCANNNNNTGG 1 cut(s) 606
PkrI GCNGC 3 cut(s) 35, 1093, 1152
PleI GAGTC 1 cut(s) 886
PmaCI CACGTG 1 cut(s) 636
PmlI CACGTG 1 cut(s) 636
PpsI GAGTC 1 cut(s) 886
Ppu21I YACGTR 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 1066
PspCI CACGTG 1 cut(s) 636
PspGI CCWGG 1 cut(s) 1066
PspN4I GGNNCC 3 cut(s) 6, 453, 463
PspPI GGNCC 3 cut(s) 462, 651, 775
PsuI RGATCY 1 cut(s) 388
SaqAI TTAA 7 cut(s) 23, 128, 308, 713, 839, 909, 1225
SatI GCNGC 3 cut(s) 34, 1092, 1151
Sau3AI GATC 2 cut(s) 388, 1129
Sau96I GGNCC 3 cut(s) 462, 651, 775
SchI GAGTC 1 cut(s) 886
ScrFI CCNGG 1 cut(s) 1068
SduI GDGCHC 2 cut(s) 480, 673
SfaNI GCATC 1 cut(s) 828
SfcI CTRYAG 1 cut(s) 561
SinI GGWCC 2 cut(s) 462, 775
SmlI CTYRAG 2 cut(s) 161, 290
SmoI CTYRAG 2 cut(s) 161, 290
SsiI CCGC 2 cut(s) 1078, 1091
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 1066
StyI CCWWGG 3 cut(s) 317, 465, 1111
TaaI ACNGT 3 cut(s) 144, 590, 710
TaiI ACGT 1 cut(s) 638
TaqI TCGA 3 cut(s) 54, 385, 447
TaqII GACCGA 1 cut(s) 1022
TauI GCSGC 1 cut(s) 1094
TfiI GAWTC 4 cut(s) 28, 403, 695, 884
Tru1I TTAA 7 cut(s) 23, 128, 308, 713, 839, 909, 1225
Tru9I TTAA 7 cut(s) 23, 128, 308, 713, 839, 909, 1225
TseFI GTSAC 1 cut(s) 922
TseI GCWGC 2 cut(s) 33, 1150
Tsp45I GTSAC 1 cut(s) 922
TspDTI ATGAA 5 cut(s) 633, 821, 977, 1184, 1188
TspGWI ACGGA 1 cut(s) 382
Van91I CCANNNNNTGG 1 cut(s) 606
VpaK11BI GGWCC 2 cut(s) 462, 775
XapI RAATTY 5 cut(s) 419, 429, 744, 1062, 1194
XmaJI CCTAGG 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 902
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.