RchiOBHm_Chr7g0180241

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000424
Physical Location & Seq
Forward (+)
2224796 .. 2226626
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16071

Sequence Viewer

Length: 1704 bp
ATGGCTTTTGATGTCACCAGAAAACAATGGCATGAAGTCCAACTGTGGCTGCCTGCTTCTGGTGATCATCGGTTCAGTGGGAGGGCTGTGGTTGTAGGTGACACTATCTATACCTTTAAGATTTCAAGTAATAGTGTTGTTGCATACAACTTTTGGTGGGATTTAGATCAGGAAGGTGATGTTACATTTTATATAAGCCCTCAACCCGATTTGGAAGGCTTGCATATCAACAAGGCCTTTCTGGTGCAAACAGGTCGTTATAAGTTTACAGAAACTAGACAAGGATATTTGGTTCACTTGGGAAACTTGGATTTTTGTCTTGTCCAAAATCGGTTCAAAAAACATAGAGCTGATCGTGAACAGAAACTCTGTATCACCACGTTTCAAGTTGTGGTCGACGATGAACGGGGAGGGAAGCATATCATCAAGACCTTACATTCAACTTTATGTGAGGTGGACTCCCTCATTCATTTGGGTTTCAGCTTTACTCCAGATTGTGATGATTTTGAACCCACAGAAGAGGAAATGAGACAAGCTGCAACATTGAGTCACCTTGCTGATTTCGATGCAAATGAATTCGGCATGTCACACACTATCCCACAAGAGCTAATCTTTGACATACTTGCAAGGCTTTCGACCAAGGATTTGATACGACTCATGTGTGTTTCCAAAGCATGGAATGCAGCCATCCAAGACCCAGAATGGGCCAAGCTGCATCGCCAGCTCTCCATCAAGCGCAACTCTTTGGATCCGACCTTTTTAATTCTACCATCTCAGCTTGATGAGTTTTTTACAATGACCTTGTTCGACAATGGCACAAAGGGAAGACTTGTGTTAATCAAGCAGCAGTCAAAGCAGGTTGAGAAAAGAAATAAGATCTTGGGCTGCAGCAATGGTTTGCTTTGCATTTACGAATCTATGGAAAATGAAGACTTTGGTTTGTGGAATCCGACAATCCACAAGTTTAAGAGGATTCCTTTGTCAGCCTTCAATAAGTGGACGCAGAGCAAGACCTTTTATGGCTTCGGGTATGATTCAGTCAATGATGACTATAAGTTTGTGAAAATGGGACAGTTTAAGGATCCGAGTGGTGTTGTTACAAGCTCGGAAGTGCAGGTTTATAGTCTAAAATTGCACTCATGGAAAAGGGTCCAAGATTTGCCTTCTCATCTTAATAAAGATTATATACTTGCCTCAAATGGGGTTTGTCTGGCTAGTTCCTTACATTGGTTGATGAGATTAGGTGATAAAGGTGGAGGACCAATGATAGTTCTATCCCTTGATCTGGCAAGTGAAGAATACCACTGGTTTTCTGCCCCAGCTTGTTATAACAGTGAGCATTTGAGTATCAACTACTTGGATTTGCATGTAATGGCAGGGTTCTTATGCTTTTGTTTCGACACTGATTCCCTCCGGGAGACTTGGATTTTGAAGGAATATGGAGTTACCAAATCTTGGACCAAGCTTTGTTATTATAAAAGAAATTGGGGTTGCAATCCTTTGATCTTTTCAAAGTGTGGTAAGAAGATTCTTTTCGCAAGAGTTGCGGAATTGTTTTGGTATGATCTGGAGAACAAGAGAATTGAAAATGTCAGCACTGATATCAGGCCTGTGAGGAGTAGGCCGTTACAGACGGTAACTTCTGTGGAAAACCTTAATCTTCTTAGGAGGCGACCAGAACTACCTTATAATAACTGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

567

Amino Acids

65.62

Weight (kDa)

7.02

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 199 - 240 1.2e-09 F-box-like
F-box PF00646 199 - 234 4.2e-09 F-box domain
FBA_3 PF08268 261 - 493 1.2e-17 F-box associated beta propeller domain
FBA_1 PF07734 280 - 493 1.8e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 261, 1329, 1476, 1689
Acc36I ACCTGC 2 cut(s) 847, 1105
AccB7I CCANNNNNTGG 2 cut(s) 675, 1455
AccI GTMKAC 1 cut(s) 396
AciI CCGC 1 cut(s) 1547
AclWI GGATC 4 cut(s) 743, 756, 1076, 1089
AcsI RAATTY 1 cut(s) 575
AfiI CCNNNNNNNGG 7 cut(s) 59, 675, 703, 1200, 1227, 1285, 1455
AgsI TTSAA 9 cut(s) 126, 337, 386, 441, 509, 991, 1432, 1512, 1586
AloI GAACNNNNNNTCC 2 cut(s) 276, 308
Alw26I GTCTC 2 cut(s) 523, 1412
AlwI GGATC 4 cut(s) 743, 756, 1076, 1089
AoxI GGCC 4 cut(s) 234, 705, 1607, 1622
ApeKI GCWGC 7 cut(s) 49, 536, 683, 712, 844, 885, 888
ApoI RAATTY 1 cut(s) 575
ArsI GACNNNNNNTTYG 6 cut(s) 628, 660, 1040, 1072, 1411, 1443
AspLEI GCGC 1 cut(s) 738
AspS9I GGNCC 4 cut(s) 705, 1150, 1259, 1458
AsuC2I CCSGG 1 cut(s) 1415
AsuHPI GGTGA 7 cut(s) 7, 74, 110, 188, 367, 542, 1256
AvaII GGWCC 3 cut(s) 1150, 1259, 1458
BamHI GGATCC 2 cut(s) 748, 1081
BbsI GAAGAC 2 cut(s) 832, 936
BbvI GCAGC 7 cut(s) 36, 523, 695, 699, 856, 872, 900
BccI CCATC 3 cut(s) 695, 737, 778
BceAI ACGGC 1 cut(s) 1609
BcgI CGANNNNNNTGC 4 cut(s) 236, 270, 615, 649
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 1 cut(s) 1415
BcoDI GTCTC 2 cut(s) 523, 1412
BfaI CTAG 2 cut(s) 276, 1215
BfmI CTRYAG 1 cut(s) 886
BfuAI ACCTGC 2 cut(s) 847, 1105
BglII AGATCT 1 cut(s) 876
BisI GCNGC 7 cut(s) 50, 537, 684, 713, 845, 886, 889
BlsI GCNGC 7 cut(s) 51, 538, 685, 714, 846, 887, 890
Bme1390I CCNGG 1 cut(s) 1415
Bme18I GGWCC 3 cut(s) 1150, 1259, 1458
BmgT120I GGNCC 4 cut(s) 705, 1150, 1259, 1458
BmiI GGNNCC 3 cut(s) 750, 1083, 1151
BmrFI CCNGG 1 cut(s) 1415
BmsI GCATC 2 cut(s) 556, 724
BpiI GAAGAC 2 cut(s) 832, 936
BplI GAGNNNNNCTC 2 cut(s) 443, 475
BpmI CTGGAG 2 cut(s) 474, 1589
BpuMI CCSGG 1 cut(s) 1415
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 639
Bsc4I CCNNNNNNNGG 7 cut(s) 59, 675, 703, 1200, 1227, 1285, 1455
Bse1I ACTGG 1 cut(s) 1310
Bse3DI GCAATG 1 cut(s) 898
Bse8I GATNNNNATC 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 639
BseGI GGATG 1 cut(s) 687
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 7 cut(s) 59, 675, 703, 1200, 1227, 1285, 1455
BseMI GCAATG 1 cut(s) 898
BseMII CTCAG 1 cut(s) 788
BseNI ACTGG 1 cut(s) 1310
BseRI GAGGAG 1 cut(s) 1630
BseXI GCAGC 7 cut(s) 36, 523, 695, 699, 856, 872, 900
BseYI CCCAGC 1 cut(s) 1318
BsgI GTGCAG 1 cut(s) 1133
BshFI GGCC 4 cut(s) 236, 707, 1609, 1624
BsiSI CCGG 1 cut(s) 1414
BslFI GGGAC 1 cut(s) 1083
BslI CCNNNNNNNGG 7 cut(s) 59, 675, 703, 1200, 1227, 1285, 1455
BsmAI GTCTC 2 cut(s) 523, 1412
BsmFI GGGAC 1 cut(s) 1083
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 4 cut(s) 236, 707, 1609, 1624
Bsp143I GATC 9 cut(s) 64, 166, 352, 748, 876, 1081, 1282, 1503, 1564
BspACI CCGC 1 cut(s) 1547
BspANI GGCC 4 cut(s) 236, 707, 1609, 1624
BspCNI CTCAG 1 cut(s) 787
BspLI GGNNCC 3 cut(s) 750, 1083, 1151
BspMAI CTGCAG 1 cut(s) 890
BspMI ACCTGC 2 cut(s) 847, 1105
BspPI GGATC 4 cut(s) 743, 756, 1076, 1089
BsrDI GCAATG 1 cut(s) 898
BsrI ACTGG 1 cut(s) 1310
BssECI CCNNGG 1 cut(s) 639
BssMI GATC 9 cut(s) 64, 166, 352, 748, 876, 1081, 1282, 1503, 1564
BssT1I CCWWGG 1 cut(s) 639
Bst4CI ACNGT 5 cut(s) 45, 1074, 1334, 1636, 1697
Bst6I CTCTTC 1 cut(s) 513
BstAPI GCANNNNNTGC 2 cut(s) 680, 1544
BstC8I GCNNGC 3 cut(s) 54, 221, 722
BstDEI CTNAG 2 cut(s) 774, 1664
BstF5I GGATG 1 cut(s) 687
BstHHI GCGC 1 cut(s) 738
BstKTI GATC 9 cut(s) 67, 169, 355, 751, 879, 1084, 1285, 1506, 1567
BstMAI GTCTC 2 cut(s) 523, 1412
BstMBI GATC 9 cut(s) 64, 166, 352, 748, 876, 1081, 1282, 1503, 1564
BstMWI GCNNNNNNNGC 4 cut(s) 680, 721, 853, 1544
BstNSI RCATGY 2 cut(s) 586, 1370
BstSCI CCNGG 1 cut(s) 1413
BstSFI CTRYAG 1 cut(s) 886
BstV1I GCAGC 7 cut(s) 36, 523, 695, 699, 856, 872, 900
BstV2I GAAGAC 2 cut(s) 832, 936
BstX2I RGATCY 3 cut(s) 748, 876, 1081
BstYI RGATCY 3 cut(s) 748, 876, 1081
BsuRI GGCC 4 cut(s) 236, 707, 1609, 1624
BtgZI GCGATG 1 cut(s) 701
BtsCI GGATG 1 cut(s) 687
BtsIMutI CAGTG 5 cut(s) 82, 1303, 1339, 1401, 1596
BveI ACCTGC 2 cut(s) 847, 1105
Cac8I GCNNGC 3 cut(s) 54, 221, 722
CfoI GCGC 1 cut(s) 738
Cfr13I GGNCC 4 cut(s) 705, 1150, 1259, 1458
CseI GACGC 1 cut(s) 1009
CviAII CATG 6 cut(s) 32, 583, 658, 675, 1140, 1367
DdeI CTNAG 2 cut(s) 774, 1664
DpnI GATC 9 cut(s) 66, 168, 354, 750, 878, 1083, 1284, 1505, 1566
DpnII GATC 9 cut(s) 64, 166, 352, 748, 876, 1081, 1282, 1503, 1564
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco130I CCWWGG 1 cut(s) 639
Eco147I AGGCCT 2 cut(s) 236, 1609
Eco32I GATATC 1 cut(s) 1603
Eco47I GGWCC 3 cut(s) 1150, 1259, 1458
EcoRI GAATTC 1 cut(s) 575
EcoRV GATATC 1 cut(s) 1603
EcoT14I CCWWGG 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 6 cut(s) 35, 586, 661, 678, 1143, 1370
FaqI GGGAC 1 cut(s) 1083
FatI CATG 6 cut(s) 31, 582, 657, 674, 1139, 1366
FbaI TGATCA 1 cut(s) 64
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 7 cut(s) 50, 537, 684, 713, 845, 886, 889
FokI GGATG 1 cut(s) 674
Fsp4HI GCNGC 7 cut(s) 50, 537, 684, 713, 845, 886, 889
FspBI CTAG 2 cut(s) 276, 1215
GlaI GCGC 1 cut(s) 737
GluI GCNGC 7 cut(s) 50, 537, 684, 713, 845, 886, 889
GsaI CCCAGC 1 cut(s) 1322
GsuI CTGGAG 2 cut(s) 474, 1589
HaeIII GGCC 4 cut(s) 236, 707, 1609, 1624
HapII CCGG 1 cut(s) 1414
HgaI GACGC 1 cut(s) 1009
HhaI GCGC 1 cut(s) 738
Hin1II CATG 6 cut(s) 35, 586, 661, 678, 1143, 1370
Hin6I GCGC 1 cut(s) 736
HinP1I GCGC 1 cut(s) 736
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 1463
HinfI GANTC 9 cut(s) 458, 547, 654, 914, 946, 973, 1034, 1406, 1528
HpaII CCGG 1 cut(s) 1414
HphI GGTGA 7 cut(s) 7, 74, 110, 188, 367, 542, 1256
Hpy166II GTNNAC 6 cut(s) 267, 295, 359, 397, 457, 999
Hpy188I TCNGA 4 cut(s) 753, 951, 1086, 1108
Hpy188III TCNNGA 5 cut(s) 170, 356, 427, 491, 1568
Hpy8I GTNNAC 6 cut(s) 267, 295, 359, 397, 457, 999
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 5 cut(s) 167, 209, 997, 1173, 1426
HpyCH4III ACNGT 5 cut(s) 45, 1074, 1334, 1636, 1697
HpyCH4IV ACGT 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 4 cut(s) 680, 721, 853, 1544
HpyF3I CTNAG 2 cut(s) 774, 1664
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 6 cut(s) 35, 586, 661, 678, 1143, 1370
HspAI GCGC 1 cut(s) 736
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 9 cut(s) 64, 166, 352, 748, 876, 1081, 1282, 1503, 1564
Lsp1109I GCAGC 7 cut(s) 36, 523, 695, 699, 856, 872, 900
LweI GCATC 2 cut(s) 556, 724
MaeI CTAG 2 cut(s) 276, 1215
MaeII ACGT 1 cut(s) 380
MalI GATC 9 cut(s) 66, 168, 354, 750, 878, 1083, 1284, 1505, 1566
MboI GATC 9 cut(s) 64, 166, 352, 748, 876, 1081, 1282, 1503, 1564
MboII GAAGA 6 cut(s) 530, 837, 941, 1307, 1537, 1652
MflI RGATCY 3 cut(s) 748, 876, 1081
MluCI AATT 6 cut(s) 575, 762, 1130, 1483, 1550, 1581
MlyI GAGTC 3 cut(s) 452, 556, 648
MmeI TCCRAC 3 cut(s) 64, 776, 974
MseI TTAA 7 cut(s) 117, 761, 836, 966, 1077, 1173, 1656
MspI CCGG 1 cut(s) 1414
MspR9I CCNGG 1 cut(s) 1415
Mva1269I GAATGC 1 cut(s) 685
MwoI GCNNNNNNNGC 4 cut(s) 680, 721, 853, 1544
NciI CCSGG 1 cut(s) 1415
NdeII GATC 9 cut(s) 64, 166, 352, 748, 876, 1081, 1282, 1503, 1564
NlaIII CATG 6 cut(s) 35, 586, 661, 678, 1143, 1370
NlaIV GGNNCC 3 cut(s) 750, 1083, 1151
NmuCI GTSAC 5 cut(s) 13, 98, 548, 585, 1697
NspI RCATGY 2 cut(s) 586, 1370
PceI AGGCCT 2 cut(s) 236, 1609
PctI GAATGC 1 cut(s) 685
PfeI GAWTC 6 cut(s) 914, 946, 973, 1034, 1406, 1528
PflMI CCANNNNNTGG 2 cut(s) 675, 1455
PfoI TCCNGGA 1 cut(s) 1413
PkrI GCNGC 7 cut(s) 51, 538, 685, 714, 846, 887, 890
PleI GAGTC 3 cut(s) 452, 555, 648
PpsI GAGTC 3 cut(s) 452, 555, 648
PsiI TTATAA 4 cut(s) 261, 1329, 1476, 1689
PspFI CCCAGC 1 cut(s) 1318
PspN4I GGNNCC 3 cut(s) 750, 1083, 1151
PspPI GGNCC 4 cut(s) 705, 1150, 1259, 1458
PstI CTGCAG 1 cut(s) 890
PsuI RGATCY 3 cut(s) 748, 876, 1081
SalI GTCGAC 1 cut(s) 395
SaqAI TTAA 7 cut(s) 117, 761, 836, 966, 1077, 1173, 1656
SatI GCNGC 7 cut(s) 50, 537, 684, 713, 845, 886, 889
Sau3AI GATC 9 cut(s) 64, 166, 352, 748, 876, 1081, 1282, 1503, 1564
Sau96I GGNCC 4 cut(s) 705, 1150, 1259, 1458
SchI GAGTC 3 cut(s) 452, 556, 648
ScrFI CCNGG 1 cut(s) 1415
SfaNI GCATC 2 cut(s) 556, 724
SfcI CTRYAG 1 cut(s) 886
SinI GGWCC 3 cut(s) 1150, 1259, 1458
Sse9I AATT 6 cut(s) 575, 762, 1130, 1483, 1550, 1581
SseBI AGGCCT 2 cut(s) 236, 1609
SsiI CCGC 1 cut(s) 1547
SspMI CTAG 2 cut(s) 276, 1215
StuI AGGCCT 2 cut(s) 236, 1609
StyD4I CCNGG 1 cut(s) 1413
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 5 cut(s) 45, 1074, 1334, 1636, 1697
TaiI ACGT 1 cut(s) 383
TaqI TCGA 5 cut(s) 396, 564, 635, 807, 1398
TasI AATT 6 cut(s) 575, 762, 1130, 1483, 1550, 1581
TfiI GAWTC 6 cut(s) 914, 946, 973, 1034, 1406, 1528
Tru1I TTAA 7 cut(s) 117, 761, 836, 966, 1077, 1173, 1656
Tru9I TTAA 7 cut(s) 117, 761, 836, 966, 1077, 1173, 1656
TscAI CASTG 5 cut(s) 82, 1310, 1339, 1408, 1603
TseFI GTSAC 5 cut(s) 13, 98, 548, 585, 1697
TseI GCWGC 7 cut(s) 49, 536, 683, 712, 844, 885, 888
Tsp45I GTSAC 5 cut(s) 13, 98, 548, 585, 1697
TspDTI ATGAA 5 cut(s) 48, 417, 458, 588, 942
TspRI CASTG 5 cut(s) 82, 1310, 1339, 1408, 1603
Van91I CCANNNNNTGG 2 cut(s) 675, 1455
VpaK11BI GGWCC 3 cut(s) 1150, 1259, 1458
XapI RAATTY 1 cut(s) 575
XceI RCATGY 2 cut(s) 586, 1370
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 2 cut(s) 276, 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.