Prupe.1G556300_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000424
Physical Location & Seq
Forward (+)
45433965 .. 45436708
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G556300.1

Sequence Viewer

Length: 882 bp
ATGGCCTCAAATTCTAGCCCTAAACCCAAGCTTTCAACAACCACCCCATACATCCCACCGGAGCTTTGTGGTCGACATTCTTTTACGGCTTACGCCCAAGGATATGATGTGATTCATTTGTGTTTGCGAAGCTTGGAATGCCATCACCAACGCTCCATCCAAACCAGCTCTTTTTGCTCCCTTTTAATTCATTCAAACAATCGGCGCACAAATTTCTTCTCATTCCCATTTTACGACAACGATAGCATCGCCAAGAGAGCCATCAAACTTGAGCTGCCCTTGAGACACCGTCGCAGTTGTACTGACAGAGCGGGTAACTGTCATGGTTTACTATGCATTGCAAACAACAATAAAAAAGATGTTGCTTTATGGAATCCCTCCATTCAGAGGTTCAAGAGAATCTCATTCTCACTCTCTGAGATAATGGAAAGTGAAGTTGCCAGGTTTGGGTTCGGGTATGATTCTGCTACTGATGACTACAAAGTTGTTAGGATTATGGAGTTTCGTACTTCTAATGGTTTTTGTTCTTCTGAAGTGAAGGTTTATGGCCTAAAATCCAACTCATGGAAAAGGGTCCAGAACTTACCTTCCAATCATCGTTATTTTGGTTCTTATATTCACTGTTTGAACAGTGCTCTACATTGGCTTACCAATCCTGATTTGGGTAACACATTCATAATTCTAACCCTTGATCTTGTGAGTGAGAAATATCACGAATTTCCCACCCCGGAGGACGGTGTGCATGCTTTTCCTCTGCCGGGTTTGACTGCCTTGGGAGGCTGCTTATGTTTTATTGTTAATAATAAGGCTGGAAGTCATGTTTGGGCTATGAAGGAATGTGGAGTGACAAAATCTTGGGTGATGCTTTTTTTTTTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

294

Amino Acids

33.29

Weight (kDa)

8.98

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 564
AccBSI CCGCTC 1 cut(s) 311
AccI GTMKAC 1 cut(s) 73
AciI CCGC 1 cut(s) 311
AcsI RAATTY 3 cut(s) 10, 211, 716
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 2 cut(s) 301, 508
AfiI CCNNNNNNNGG 6 cut(s) 387, 447, 564, 662, 734, 758
AgsI TTSAA 4 cut(s) 36, 195, 394, 628
AjnI CCWGG 1 cut(s) 440
AjuI GAANNNNNNNTTGG 2 cut(s) 805, 837
AloI GAACNNNNNNTCC 2 cut(s) 572, 604
AluBI AGCT 5 cut(s) 31, 64, 132, 168, 274
AluI AGCT 5 cut(s) 31, 64, 132, 168, 274
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 1 cut(s) 277
AoxI GGCC 2 cut(s) 3, 547
ApeKI GCWGC 2 cut(s) 274, 780
ApoI RAATTY 3 cut(s) 10, 211, 716
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 574
AsuC2I CCSGG 2 cut(s) 728, 759
AsuHPI GGTGA 2 cut(s) 137, 871
AvaII GGWCC 1 cut(s) 574
Bbv12I GWGCWC 1 cut(s) 637
BbvI GCAGC 2 cut(s) 261, 767
BccI CCATC 3 cut(s) 150, 164, 269
BceAI ACGGC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 442
BcnI CCSGG 2 cut(s) 728, 759
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 1 cut(s) 15
BisI GCNGC 2 cut(s) 275, 781
BlsI GCNGC 2 cut(s) 276, 782
Bme1390I CCNGG 3 cut(s) 442, 728, 759
Bme18I GGWCC 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 1 cut(s) 575
BmrFI CCNGG 3 cut(s) 442, 728, 759
BmsI GCATC 2 cut(s) 255, 852
BpuEI CTTGAG 2 cut(s) 290, 301
BpuMI CCSGG 2 cut(s) 728, 759
BsaJI CCNNGG 3 cut(s) 97, 726, 771
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 6 cut(s) 387, 447, 564, 662, 734, 758
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 3 cut(s) 97, 726, 771
BseGI GGATG 2 cut(s) 51, 156
BseLI CCNNNNNNNGG 6 cut(s) 387, 447, 564, 662, 734, 758
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 408
BseXI GCAGC 2 cut(s) 261, 767
BshFI GGCC 2 cut(s) 5, 549
BsiHKAI GWGCWC 1 cut(s) 637
BsiSI CCGG 3 cut(s) 59, 728, 758
BslI CCNNNNNNNGG 6 cut(s) 387, 447, 564, 662, 734, 758
BsmAI GTCTC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 2 cut(s) 5, 549
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 1 cut(s) 691
BspACI CCGC 1 cut(s) 311
BspANI GGCC 2 cut(s) 5, 549
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 575
BsrBI CCGCTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 336
BssECI CCNNGG 3 cut(s) 97, 726, 771
BssMI GATC 1 cut(s) 691
BssT1I CCWWGG 2 cut(s) 97, 771
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 5 cut(s) 290, 320, 623, 632, 737
BstC8I GCNNGC 1 cut(s) 744
BstDEI CTNAG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 51, 156
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 1 cut(s) 694
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 1 cut(s) 691
BstMWI GCNNNNNNNGC 3 cut(s) 138, 174, 257
BstNI CCWGG 1 cut(s) 442
BstNSI RCATGY 1 cut(s) 746
BstSCI CCNGG 3 cut(s) 440, 726, 757
BstV1I GCAGC 2 cut(s) 261, 767
BsuRI GGCC 2 cut(s) 5, 549
BtgZI GCGATG 1 cut(s) 232
BtsCI GGATG 2 cut(s) 51, 156
BtsIMutI CAGTG 2 cut(s) 619, 637
Cac8I GCNNGC 1 cut(s) 744
CfoI GCGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 574
Csp6I GTAC 2 cut(s) 300, 507
CviAII CATG 4 cut(s) 323, 564, 743, 818
CviQI GTAC 2 cut(s) 300, 507
DdeI CTNAG 1 cut(s) 417
DpnI GATC 1 cut(s) 693
DpnII GATC 1 cut(s) 691
DraI TTTAAA 1 cut(s) 876
Eco130I CCWWGG 2 cut(s) 97, 771
Eco47I GGWCC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 440
EcoT14I CCWWGG 2 cut(s) 97, 771
EcoT22I ATGCAT 1 cut(s) 338
ErhI CCWWGG 2 cut(s) 97, 771
FaeI CATG 4 cut(s) 326, 567, 746, 821
FatI CATG 4 cut(s) 322, 563, 742, 817
FauI CCCGC 1 cut(s) 304
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 275, 781
FokI GGATG 2 cut(s) 38, 143
Fsp4HI GCNGC 2 cut(s) 275, 781
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 206
GluI GCNGC 2 cut(s) 275, 781
HaeIII GGCC 2 cut(s) 5, 549
HapII CCGG 3 cut(s) 59, 728, 758
HhaI GCGC 1 cut(s) 207
Hin1II CATG 4 cut(s) 326, 567, 746, 821
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HindIII AAGCTT 2 cut(s) 29, 130
HinfI GANTC 4 cut(s) 112, 373, 399, 461
HpaII CCGG 3 cut(s) 59, 728, 758
HphI GGTGA 2 cut(s) 137, 871
Hpy166II GTNNAC 2 cut(s) 74, 329
Hpy188I TCNGA 3 cut(s) 387, 418, 532
Hpy188III TCNNGA 4 cut(s) 394, 577, 656, 713
Hpy8I GTNNAC 2 cut(s) 74, 329
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 3 cut(s) 532, 597, 826
HpyCH4III ACNGT 5 cut(s) 290, 320, 623, 632, 737
HpyCH4V TGCA 3 cut(s) 336, 341, 742
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 174, 257
HpyF3I CTNAG 1 cut(s) 417
Hsp92II CATG 4 cut(s) 326, 567, 746, 821
HspAI GCGC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 691
LmnI GCTCC 3 cut(s) 61, 158, 182
LpnPI CCDG 9 cut(s) 72, 178, 427, 454, 590, 669, 741, 771, 795
Lsp1109I GCAGC 2 cut(s) 261, 767
LweI GCATC 2 cut(s) 255, 852
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 3 cut(s) 314, 665, 844
MalI GATC 1 cut(s) 693
MbiI CCGCTC 1 cut(s) 311
MboI GATC 1 cut(s) 691
MboII GAAGA 2 cut(s) 208, 519
MhlI GDGCHC 1 cut(s) 637
MluCI AATT 6 cut(s) 10, 186, 211, 678, 716, 877
MmeI TCCRAC 1 cut(s) 582
MnlI CCTC 6 cut(s) 16, 381, 388, 724, 762, 770
Mph1103I ATGCAT 1 cut(s) 338
MseI TTAA 4 cut(s) 185, 798, 875, 880
MspI CCGG 3 cut(s) 59, 728, 758
MspR9I CCNGG 3 cut(s) 442, 728, 759
Mva1269I GAATGC 1 cut(s) 143
MvaI CCWGG 1 cut(s) 442
MwoI GCNNNNNNNGC 3 cut(s) 138, 174, 257
NciI CCSGG 2 cut(s) 728, 759
NdeII GATC 1 cut(s) 691
NlaIII CATG 4 cut(s) 326, 567, 746, 821
NlaIV GGNNCC 1 cut(s) 575
NmuCI GTSAC 1 cut(s) 844
NsiI ATGCAT 1 cut(s) 338
NspI RCATGY 1 cut(s) 746
PaeI GCATGC 1 cut(s) 746
PctI GAATGC 1 cut(s) 143
PfeI GAWTC 4 cut(s) 112, 373, 399, 461
PflFI GACNNNGTC 1 cut(s) 288
PflMI CCANNNNNTGG 1 cut(s) 564
PkrI GCNGC 2 cut(s) 276, 782
Psp6I CCWGG 1 cut(s) 440
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 575
PspPI GGNCC 1 cut(s) 574
PsyI GACNNNGTC 1 cut(s) 288
RsaI GTAC 2 cut(s) 301, 508
RsaNI GTAC 2 cut(s) 300, 507
SalI GTCGAC 1 cut(s) 72
SaqAI TTAA 4 cut(s) 185, 798, 875, 880
SatI GCNGC 2 cut(s) 275, 781
Sau3AI GATC 1 cut(s) 691
Sau96I GGNCC 1 cut(s) 574
ScrFI CCNGG 3 cut(s) 442, 728, 759
SduI GDGCHC 1 cut(s) 637
SetI ASST 9 cut(s) 33, 66, 134, 170, 276, 392, 446, 543, 589
SfaNI GCATC 2 cut(s) 255, 852
SinI GGWCC 1 cut(s) 574
SmlI CTYRAG 2 cut(s) 269, 280
SmoI CTYRAG 2 cut(s) 269, 280
SphI GCATGC 1 cut(s) 746
Sse9I AATT 6 cut(s) 10, 186, 211, 678, 716, 877
SsiI CCGC 1 cut(s) 311
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 3 cut(s) 440, 726, 757
StyI CCWWGG 2 cut(s) 97, 771
TaaI ACNGT 5 cut(s) 290, 320, 623, 632, 737
TaqI TCGA 1 cut(s) 73
TasI AATT 6 cut(s) 10, 186, 211, 678, 716, 877
TatI WGTACW 1 cut(s) 299
TfiI GAWTC 4 cut(s) 112, 373, 399, 461
Tru1I TTAA 4 cut(s) 185, 798, 875, 880
Tru9I TTAA 4 cut(s) 185, 798, 875, 880
TscAI CASTG 2 cut(s) 626, 637
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 2 cut(s) 274, 780
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 4 cut(s) 104, 179, 664, 845
TspRI CASTG 2 cut(s) 626, 637
Tth111I GACNNNGTC 1 cut(s) 288
Van91I CCANNNNNTGG 1 cut(s) 564
VpaK11BI GGWCC 1 cut(s) 574
XapI RAATTY 3 cut(s) 10, 211, 716
XceI RCATGY 1 cut(s) 746
XcmI CCANNNNNNNNNTGG 1 cut(s) 658
XmiI GTMKAC 1 cut(s) 73
XspI CTAG 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.