MD16G1218600.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000424
Physical Location & Seq
Forward (+)
21674456 .. 21675482
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1218600.v1.1.491

Sequence Viewer

Length: 456 bp
ATGTTGGGCTGCTCGGTTAATGGTGTGGTTTGTATTCACGACTGTGAATGTACAGATGTTTGTCTGTGGAACACGTCAATTCAAAAGTTGAAGAAGATTCCCCTTCCAACGTTGGAGCATCAGCCACCATCATATTCCAACAGGTACACTCTCTTCGGGTTCGGGTATGATTCAGCTAATGATGACTTTAAAGTTTTGCGAATTACGCAGTTTGAGAACAGAAAGAGAGAGTCTGTGGATTCCCAAGTCGGCGTTTATAGTCTAAAATCTAACTCATGGAAAAAGATCCAGAGCTTGCCTTGCCGTGGGTTTTCTGTTCATAGGCGTGAGATTGTTTTTACCAACGGTGCTCTGTGTTGGCTGATGCGGAAAGATAACAGTCGATGCATAATTCTAACCCTTGATCTTGCCAATGAGAATTATCGGGAGTTTCACACCCCCAGTGGACGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

152

Amino Acids

17.35

Weight (kDa)

8.81

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 5 - 144 5.9e-14 F-box associated beta propeller domain
FBA_1 PF07734 8 - 145 4.4e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 367
AclI AACGTT 1 cut(s) 110
AclWI GGATC 1 cut(s) 280
AfaI GTAC 2 cut(s) 52, 146
AfiI CCNNNNNNNGG 1 cut(s) 305
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 2 cut(s) 83, 91
AjiI CACGTC 1 cut(s) 75
AleI CACNNNNGTG 1 cut(s) 42
AluBI AGCT 2 cut(s) 176, 294
AluI AGCT 2 cut(s) 176, 294
Alw21I GWGCWC 1 cut(s) 352
AlwI GGATC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 9
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
Bbv12I GWGCWC 1 cut(s) 352
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 288
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
BmgBI CACGTC 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 3 cut(s) 127, 354, 374
BmuI ACTGGG 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 50
Bsp143I GATC 2 cut(s) 285, 403
BspACI CCGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 50
BsrI ACTGG 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 285, 403
Bst4CI ACNGT 3 cut(s) 44, 347, 380
Bst6I CTCTTC 1 cut(s) 158
BstAUI TGTACA 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 296
BstDSI CCRYGG 1 cut(s) 304
BstKTI GATC 2 cut(s) 288, 406
BstMBI GATC 2 cut(s) 285, 403
BstMWI GCNNNNNNNGC 2 cut(s) 205, 300
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BtgI CCRYGG 1 cut(s) 304
BtrI CACGTC 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 448
Cac8I GCNNGC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 51, 145
CviAII CATG 1 cut(s) 276
CviJI RGCY 5 cut(s) 9, 124, 176, 294, 361
CviKI_1 RGCY 5 cut(s) 9, 124, 176, 294, 361
CviQI GTAC 2 cut(s) 51, 145
DpnI GATC 2 cut(s) 287, 405
DpnII GATC 2 cut(s) 285, 403
DraI TTTAAA 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 389
FaeI CATG 1 cut(s) 279
FaiI YATR 6 cut(s) 133, 168, 258, 277, 321, 389
FatI CATG 1 cut(s) 275
Fnu4HI GCNGC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 10
Hin1II CATG 1 cut(s) 279
HinfI GANTC 4 cut(s) 97, 170, 230, 239
Hpy166II GTNNAC 2 cut(s) 147, 446
Hpy188III TCNNGA 3 cut(s) 38, 289, 425
Hpy8I GTNNAC 2 cut(s) 147, 446
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 3 cut(s) 44, 347, 380
HpyCH4IV ACGT 2 cut(s) 74, 110
HpyCH4V TGCA 1 cut(s) 387
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 300
HpySE526I ACGT 2 cut(s) 74, 110
Hsp92II CATG 1 cut(s) 279
Kzo9I GATC 2 cut(s) 285, 403
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 2 cut(s) 127, 302
LweI GCATC 3 cut(s) 127, 354, 374
MaeII ACGT 2 cut(s) 74, 110
MalI GATC 2 cut(s) 287, 405
MboI GATC 2 cut(s) 285, 403
MboII GAAGA 3 cut(s) 103, 106, 145
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 4 cut(s) 78, 201, 390, 418
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 3 cut(s) 93, 131, 162
MnlI CCTC 1 cut(s) 443
Mph1103I ATGCAT 1 cut(s) 389
MseI TTAA 2 cut(s) 18, 189
MslI CAYNNNNRTG 2 cut(s) 42, 324
MwoI GCNNNNNNNGC 2 cut(s) 205, 300
NdeII GATC 2 cut(s) 285, 403
NlaIII CATG 1 cut(s) 279
NsiI ATGCAT 1 cut(s) 389
OliI CACNNNNGTG 1 cut(s) 42
PfeI GAWTC 3 cut(s) 97, 170, 239
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp1406I AACGTT 1 cut(s) 110
PsuI RGATCY 1 cut(s) 285
RsaI GTAC 2 cut(s) 52, 146
RsaNI GTAC 2 cut(s) 51, 145
RseI CAYNNNNRTG 2 cut(s) 42, 324
SaqAI TTAA 2 cut(s) 18, 189
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 285, 403
SchI GAGTC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 352
SetI ASST 5 cut(s) 77, 113, 146, 178, 296
SfaNI GCATC 3 cut(s) 127, 354, 374
SmiMI CAYNNNNRTG 2 cut(s) 42, 324
Sse9I AATT 4 cut(s) 78, 201, 390, 418
SsiI CCGC 1 cut(s) 367
TaaI ACNGT 3 cut(s) 44, 347, 380
TaiI ACGT 2 cut(s) 77, 113
TaqI TCGA 1 cut(s) 382
TasI AATT 4 cut(s) 78, 201, 390, 418
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 3 cut(s) 97, 170, 239
Tru1I TTAA 2 cut(s) 18, 189
Tru9I TTAA 2 cut(s) 18, 189
TscAI CASTG 1 cut(s) 448
TseI GCWGC 1 cut(s) 9
TspDTI ATGAA 1 cut(s) 308
TspRI CASTG 1 cut(s) 448
Zsp2I ATGCAT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.