Prupe.1G024800_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000424
Physical Location & Seq
Forward (+)
1704111 .. 1705663
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G024800.1

Sequence Viewer

Length: 1158 bp
ATGTTAAACATCCCACGGGAGCTAATCTGGGACATCCTTTTACGGCTCCAGCTGAAGGATTTGATCCGATACAGATGTGTTTCCAAAGCTTGGTATGCTTTCATCCACAACCAAGACTTCATCAAACTGCATCTCGAACGCTCCATCAAAACCAACTCTACTCGCACCATTTTACTCCACACTACTCCCTCATATTTCTTTTCGTTGCCTTTTGACAACGATGAGAAGCTCGGGACAGCCACGGTAGTCAGGTTTTCGATTCCGTCAAAAGACCCAGTGAGGGAAACTACTGTGACAGTGGGCTATGCCAATGGTCTGGTTTGCATACGCAACTCTATCGATGAGGATATGTCTTATATTGCTTTGTGGAACCCGTCAATTCAAAAGCTGAAGAAAATTCCCACTAGAACACATGAACCGCGTGCACAGCCATCCCTAAAATCAGAGATGTTGAATATATATGGATTCGGGTACGATTCAACCAATGACGACTATAAAATAGTGGGGATTATTAGGAAGCCTGCTCATGAGTATGAAGTCAGTGTTTATAGCCTAAAAGCCAACTCATGGAAAAGGATCCAGAACATGCCTTGCAGTGGTTTTTCGTTACAGTCATATAGCATGGTGTTTTCAAAGGGCGCTCTAAGTTGGCTTATGTGGAAAAAGTTACACCATGAACATCAGTACATGATCGTAGGCGTAACCCTTGATCTTGCCAGTGAGAAATATCGGGAGTTTCCCAGCCCAGTGGATAGGATTGATGAAATTGAAACTTCTATGCTGGAATTGGATGTCTTGGGAGACTATCTGTGTGTTTGTATTAATCGTTTCATGAATCGATGTGAGGCTTGGATTATGAAGGAATATGGAGTGACAGAATCTTGGAGCCTGATTTATTCTATTGAAATGGTTTTGTCTATTGACATGCTTTATTATACTCTGGAGTTTCAGACCTACAAACCTTTGGTGTTTTCAAAGAATGGCAAAACGGTTCTTTTGAAGATGAGCAAAAATTTCAAGTCCGATAGTCTTGTTTGGTATGATTTAGAGAAAAAGAGTTTCAAACAAGTTGAAATTAGTGGGCTGCCCGGTCTATTCAAACCAACCATTTGCTGGGGGAGCCTTTGTCTTCTTGATGGCGATCCTGTTATTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

386

Amino Acids

44.76

Weight (kDa)

8.26

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 90, 567, 1113
AccII CGCG 1 cut(s) 421
AciI CCGC 1 cut(s) 419
AclWI GGATC 4 cut(s) 58, 571, 584, 1136
AcsI RAATTY 2 cut(s) 396, 1012
AcuI CTGAAG 2 cut(s) 74, 410
AfaI GTAC 2 cut(s) 473, 686
AfiI CCNNNNNNNGG 6 cut(s) 55, 90, 280, 567, 596, 1113
AluBI AGCT 5 cut(s) 22, 52, 89, 229, 388
AluI AGCT 5 cut(s) 22, 52, 89, 229, 388
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 1 cut(s) 795
Alw44I GTGCAC 1 cut(s) 423
AlwI GGATC 4 cut(s) 58, 571, 584, 1136
Ama87I CYCGRG 1 cut(s) 230
ApaLI GTGCAC 1 cut(s) 423
ApeKI GCWGC 1 cut(s) 1084
ApoI RAATTY 2 cut(s) 396, 1012
AseI ATTAAT 1 cut(s) 822
AspLEI GCGC 1 cut(s) 641
AsuC2I CCSGG 1 cut(s) 1089
AvaI CYCGRG 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 427
BaeI ACNNNNGTAYC 2 cut(s) 61, 94
BamHI GGATCC 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 1121
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 1071
BccI CCATC 3 cut(s) 152, 439, 1130
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BcnI CCSGG 1 cut(s) 1089
BcoDI GTCTC 1 cut(s) 795
BfaI CTAG 2 cut(s) 405, 1156
BfoI RGCGCY 1 cut(s) 642
BisI GCNGC 1 cut(s) 1085
BlsI GCNGC 1 cut(s) 1086
Bme1390I CCNGG 1 cut(s) 1089
BmeT110I CYCGRG 1 cut(s) 230
BmiI GGNNCC 5 cut(s) 47, 371, 578, 887, 1121
BmrFI CCNGG 1 cut(s) 1089
BmrI ACTGGG 2 cut(s) 269, 740
BmsI GCATC 1 cut(s) 139
BmuI ACTGGG 2 cut(s) 269, 740
BpiI GAAGAC 1 cut(s) 1121
BpmI CTGGAG 2 cut(s) 32, 962
BpuMI CCSGG 1 cut(s) 1089
Bsa29I ATCGAT 2 cut(s) 339, 838
BsaBI GATNNNNATC 1 cut(s) 1140
BsaJI CCNNGG 2 cut(s) 14, 240
BsaXI ACNNNNNCTCC 2 cut(s) 1111, 1141
Bsc4I CCNNNNNNNGG 6 cut(s) 55, 90, 280, 567, 596, 1113
Bse1I ACTGG 3 cut(s) 275, 717, 746
Bse8I GATNNNNATC 1 cut(s) 1140
BseCI ATCGAT 2 cut(s) 339, 838
BseDI CCNNGG 2 cut(s) 14, 240
BseGI GGATG 5 cut(s) 9, 33, 102, 431, 796
BseJI GATNNNNATC 1 cut(s) 1140
BseLI CCNNNNNNNGG 6 cut(s) 55, 90, 280, 567, 596, 1113
BseNI ACTGG 3 cut(s) 275, 717, 746
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 1 cut(s) 1071
BseYI CCCAGC 2 cut(s) 740, 1113
Bsh1236I CGCG 1 cut(s) 421
BshVI ATCGAT 2 cut(s) 339, 838
BsiHKAI GWGCWC 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 1089
BslFI GGGAC 2 cut(s) 44, 247
BslI CCNNNNNNNGG 6 cut(s) 55, 90, 280, 567, 596, 1113
BsmAI GTCTC 1 cut(s) 795
BsmFI GGGAC 2 cut(s) 44, 247
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 5 cut(s) 63, 576, 690, 709, 1141
BspACI CCGC 1 cut(s) 419
BspDI ATCGAT 2 cut(s) 339, 838
BspFNI CGCG 1 cut(s) 421
BspHI TCATGA 2 cut(s) 526, 831
BspLI GGNNCC 5 cut(s) 47, 371, 578, 887, 1121
BspPI GGATC 4 cut(s) 58, 571, 584, 1136
BsrI ACTGG 3 cut(s) 275, 717, 746
BssECI CCNNGG 2 cut(s) 14, 240
BssMI GATC 5 cut(s) 63, 576, 690, 709, 1141
Bst4CI ACNGT 5 cut(s) 244, 292, 298, 612, 991
BstC8I GCNNGC 2 cut(s) 423, 522
BstDEI CTNAG 1 cut(s) 644
BstDSI CCRYGG 2 cut(s) 14, 240
BstF5I GGATG 5 cut(s) 9, 33, 102, 431, 796
BstFNI CGCG 1 cut(s) 421
BstH2I RGCGCY 1 cut(s) 642
BstHHI GCGC 1 cut(s) 641
BstKTI GATC 5 cut(s) 66, 579, 693, 712, 1144
BstMAI GTCTC 1 cut(s) 795
BstMBI GATC 5 cut(s) 63, 576, 690, 709, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 95, 427, 1119
BstNSI RCATGY 2 cut(s) 589, 928
BstSCI CCNGG 1 cut(s) 1087
BstSLI GKGCMC 1 cut(s) 427
BstUI CGCG 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 1071
BstV2I GAAGAC 1 cut(s) 1121
BstX2I RGATCY 1 cut(s) 576
BstXI CCANNNNNNTGG 2 cut(s) 316, 748
BstYI RGATCY 1 cut(s) 576
Bsu15I ATCGAT 2 cut(s) 339, 838
BsuTUI ATCGAT 2 cut(s) 339, 838
BtgI CCRYGG 2 cut(s) 14, 240
BtsCI GGATG 5 cut(s) 9, 33, 102, 431, 796
BtsI GCAGTG 1 cut(s) 601
BtsIMutI CAGTG 6 cut(s) 282, 303, 547, 601, 724, 753
Cac8I GCNNGC 2 cut(s) 423, 522
CciI TCATGA 2 cut(s) 526, 831
CfoI GCGC 1 cut(s) 641
ClaI ATCGAT 2 cut(s) 339, 838
Csp6I GTAC 2 cut(s) 472, 685
CviAII CATG 9 cut(s) 413, 527, 567, 586, 622, 674, 688, 832, 925
CviQI GTAC 2 cut(s) 472, 685
DdeI CTNAG 1 cut(s) 644
DpnI GATC 5 cut(s) 65, 578, 692, 711, 1143
DpnII GATC 5 cut(s) 63, 576, 690, 709, 1141
Eco57I CTGAAG 2 cut(s) 74, 410
Eco88I CYCGRG 1 cut(s) 230
FaeI CATG 9 cut(s) 416, 530, 570, 589, 625, 677, 691, 835, 928
FaqI GGGAC 2 cut(s) 44, 247
FatI CATG 9 cut(s) 412, 526, 566, 585, 621, 673, 687, 831, 924
Fnu4HI GCNGC 1 cut(s) 1085
FokI GGATG 4 cut(s) 20, 89, 418, 803
Fsp4HI GCNGC 1 cut(s) 1085
FspBI CTAG 2 cut(s) 405, 1156
GlaI GCGC 1 cut(s) 640
GluI GCNGC 1 cut(s) 1085
GsaI CCCAGC 2 cut(s) 744, 1117
GsuI CTGGAG 2 cut(s) 32, 962
HaeII RGCGCY 1 cut(s) 642
HapII CCGG 1 cut(s) 1089
HhaI GCGC 1 cut(s) 641
Hin1II CATG 9 cut(s) 416, 530, 570, 589, 625, 677, 691, 835, 928
Hin6I GCGC 1 cut(s) 639
HinP1I GCGC 1 cut(s) 639
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 5 cut(s) 259, 465, 476, 835, 878
HpaII CCGG 1 cut(s) 1089
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 4 cut(s) 68, 445, 951, 1024
Hpy188III TCNNGA 8 cut(s) 134, 232, 527, 580, 731, 832, 941, 1133
Hpy8I GTNNAC 1 cut(s) 425
HpyAV CCTTC 2 cut(s) 49, 853
HpyCH4III ACNGT 5 cut(s) 244, 292, 298, 612, 991
HpyCH4V TGCA 4 cut(s) 130, 324, 425, 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 427, 1119
HpyF3I CTNAG 1 cut(s) 644
Hsp92II CATG 9 cut(s) 416, 530, 570, 589, 625, 677, 691, 835, 928
HspAI GCGC 1 cut(s) 639
Kzo9I GATC 5 cut(s) 63, 576, 690, 709, 1141
LmnI GCTCC 5 cut(s) 19, 51, 146, 885, 1119
Lsp1109I GCAGC 1 cut(s) 1071
LweI GCATC 1 cut(s) 139
MaeI CTAG 2 cut(s) 405, 1156
MaeIII GTNAC 5 cut(s) 292, 606, 666, 700, 871
MalI GATC 5 cut(s) 65, 578, 692, 711, 1143
MboI GATC 5 cut(s) 63, 576, 690, 709, 1141
MboII GAAGA 3 cut(s) 403, 1012, 1121
MflI RGATCY 1 cut(s) 576
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 6 cut(s) 378, 396, 765, 785, 1012, 1074
MnlI CCTC 4 cut(s) 199, 273, 337, 838
MseI TTAA 2 cut(s) 5, 822
MslI CAYNNNNRTG 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 1089
MspR9I CCNGG 1 cut(s) 1089
MvnI CGCG 1 cut(s) 421
MwoI GCNNNNNNNGC 3 cut(s) 95, 427, 1119
NciI CCSGG 1 cut(s) 1089
NdeII GATC 5 cut(s) 63, 576, 690, 709, 1141
NlaIII CATG 9 cut(s) 416, 530, 570, 589, 625, 677, 691, 835, 928
NlaIV GGNNCC 5 cut(s) 47, 371, 578, 887, 1121
NmuCI GTSAC 2 cut(s) 292, 871
NspI RCATGY 2 cut(s) 589, 928
PagI TCATGA 2 cut(s) 526, 831
PfeI GAWTC 5 cut(s) 259, 465, 476, 835, 878
PflMI CCANNNNNTGG 3 cut(s) 90, 567, 1113
PkrI GCNGC 1 cut(s) 1086
PshBI ATTAAT 1 cut(s) 822
PspFI CCCAGC 2 cut(s) 740, 1113
PspN4I GGNNCC 5 cut(s) 47, 371, 578, 887, 1121
PsuI RGATCY 1 cut(s) 576
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 2 cut(s) 473, 686
RsaNI GTAC 2 cut(s) 472, 685
RseI CAYNNNNRTG 1 cut(s) 531
SaqAI TTAA 2 cut(s) 5, 822
SatI GCNGC 1 cut(s) 1085
Sau3AI GATC 5 cut(s) 63, 576, 690, 709, 1141
ScrFI CCNGG 1 cut(s) 1089
SduI GDGCHC 1 cut(s) 427
SetI ASST 8 cut(s) 24, 54, 91, 231, 254, 390, 956, 964
SfaNI GCATC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 531
Sse9I AATT 6 cut(s) 378, 396, 765, 785, 1012, 1074
SsiI CCGC 1 cut(s) 419
SspMI CTAG 2 cut(s) 405, 1156
StyD4I CCNGG 1 cut(s) 1087
TaaI ACNGT 5 cut(s) 244, 292, 298, 612, 991
TaqI TCGA 4 cut(s) 135, 257, 339, 838
TasI AATT 6 cut(s) 378, 396, 765, 785, 1012, 1074
TatI WGTACW 1 cut(s) 684
TfiI GAWTC 5 cut(s) 259, 465, 476, 835, 878
Tru1I TTAA 2 cut(s) 5, 822
Tru9I TTAA 2 cut(s) 5, 822
TscAI CASTG 6 cut(s) 282, 303, 547, 601, 724, 753
TseFI GTSAC 2 cut(s) 292, 871
TseI GCWGC 1 cut(s) 1084
Tsp45I GTSAC 2 cut(s) 292, 871
TspDTI ATGAA 9 cut(s) 91, 109, 429, 549, 690, 777, 820, 848, 872
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 6 cut(s) 282, 303, 547, 601, 724, 753
Van91I CCANNNNNTGG 3 cut(s) 90, 567, 1113
VneI GTGCAC 1 cut(s) 423
VspI ATTAAT 1 cut(s) 822
XapI RAATTY 2 cut(s) 396, 1012
XceI RCATGY 2 cut(s) 589, 928
XcmI CCANNNNNNNNNTGG 1 cut(s) 1110
XspI CTAG 2 cut(s) 405, 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.