Rh7CG032700

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
2249213 .. 2249776
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG032700.1

Sequence Viewer

Length: 564 bp
ATGGATCCGACCTTTTTAATTCTACCATCTAAGCTTGATGAGTTTTTCAAAATGACGTTGTTTGAAAATGACAGAAAGCTAAGAATTATGTTAATCAAGCAGCAGTCAAAGCAGGTTGAGAAAAGAAATAAGATCTTGGGTTGCAGCAATGGTTTGCTTTGCATTTATGGATCTTTGGAAAATGAAGACTTTGGTTTGTGGAGTCCGACAATCCACAAGTTTAAGATGATTCCTTTGTCAGCCTTCAATAAGTGGACGCAGAGCAAGACCTTTTATGGCTTCGGGTATGATTCAGTCAATGATGACTATAAGTTTGTGAGAATGGGGCAGTTTAAGGATCCTAGTGGTGTTGTTACAAGCTCGGAAGTGCAGGTTTATAGTCTAAAATTGTACTCAAGGAAAAGGGTCCAAGACTTGCCTGCTCATCTTAATAAAGATTATATATTTGCCTCAAATGGGGTTTGTCTGGATAGTTCTTTACATTGGTTGATGAGGTTAGGTGACAAAGGTGGAGGACCAATGGTAGTTCTAACCTTTGATCTCGCAAGTGAAGAATACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

187

Amino Acids

21.56

Weight (kDa)

8.66

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 14 - 186 6.6e-15 F-box associated beta propeller domain
FBA_1 PF07734 29 - 186 2.1e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 103, 361
AclWI GGATC 4 cut(s) 12, 178, 332, 345
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 456
AgsI TTSAA 3 cut(s) 49, 65, 247
AluBI AGCT 3 cut(s) 34, 79, 360
AluI AGCT 3 cut(s) 34, 79, 360
AlwI GGATC 4 cut(s) 12, 178, 332, 345
ApeKI GCWGC 2 cut(s) 100, 144
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspS9I GGNCC 2 cut(s) 406, 515
AsuHPI GGTGA 1 cut(s) 512
AvaII GGWCC 2 cut(s) 406, 515
BamHI GGATCC 2 cut(s) 4, 337
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 112, 156
BccI CCATC 1 cut(s) 34
BfaI CTAG 2 cut(s) 342, 562
BfuAI ACCTGC 2 cut(s) 103, 361
BglII AGATCT 1 cut(s) 132
BisI GCNGC 2 cut(s) 101, 145
BlsI GCNGC 2 cut(s) 102, 146
Bme18I GGWCC 2 cut(s) 406, 515
BmgT120I GGNCC 2 cut(s) 406, 515
BmiI GGNNCC 3 cut(s) 6, 339, 407
BpiI GAAGAC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 379
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse3DI GCAATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMI GCAATG 1 cut(s) 154
BseXI GCAGC 2 cut(s) 112, 156
BsgI GTGCAG 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 456
Bsp143I GATC 5 cut(s) 4, 132, 170, 337, 538
BspLI GGNNCC 3 cut(s) 6, 339, 407
BspMI ACCTGC 2 cut(s) 103, 361
BspPI GGATC 4 cut(s) 12, 178, 332, 345
BsrDI GCAATG 1 cut(s) 154
BssMI GATC 5 cut(s) 4, 132, 170, 337, 538
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 2 cut(s) 30, 80
BstKTI GATC 5 cut(s) 7, 135, 173, 340, 541
BstMBI GATC 5 cut(s) 4, 132, 170, 337, 538
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 112, 156
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 4 cut(s) 4, 132, 170, 337
BstYI RGATCY 4 cut(s) 4, 132, 170, 337
BveI ACCTGC 2 cut(s) 103, 361
Cac8I GCNNGC 1 cut(s) 420
Cfr13I GGNCC 2 cut(s) 406, 515
CseI GACGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 391
CviJI RGCY 5 cut(s) 34, 79, 242, 279, 360
CviKI_1 RGCY 5 cut(s) 34, 79, 242, 279, 360
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 2 cut(s) 30, 80
DpnI GATC 5 cut(s) 6, 134, 172, 339, 540
DpnII GATC 5 cut(s) 4, 132, 170, 337, 538
Eco47I GGWCC 2 cut(s) 406, 515
FaiI YATR 8 cut(s) 89, 168, 276, 288, 309, 378, 441, 443
Fnu4HI GCNGC 2 cut(s) 101, 145
Fsp4HI GCNGC 2 cut(s) 101, 145
FspBI CTAG 2 cut(s) 342, 562
GluI GCNGC 2 cut(s) 101, 145
HgaI GACGC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 3 cut(s) 202, 229, 290
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 3 cut(s) 9, 207, 364
Hpy188III TCNNGA 1 cut(s) 467
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 144, 162, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 2 cut(s) 30, 80
HpySE526I ACGT 1 cut(s) 56
Kzo9I GATC 5 cut(s) 4, 132, 170, 337, 538
LpnPI CCDG 4 cut(s) 98, 356, 432, 452
Lsp1109I GCAGC 2 cut(s) 112, 156
MaeI CTAG 2 cut(s) 342, 562
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 2 cut(s) 352, 500
MalI GATC 5 cut(s) 6, 134, 172, 339, 540
MboI GATC 5 cut(s) 4, 132, 170, 337, 538
MboII GAAGA 2 cut(s) 197, 563
MflI RGATCY 4 cut(s) 4, 132, 170, 337
MluCI AATT 3 cut(s) 18, 84, 386
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 2 cut(s) 32, 230
MnlI CCTC 3 cut(s) 460, 486, 506
MseI TTAA 5 cut(s) 17, 92, 222, 333, 429
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 5 cut(s) 4, 132, 170, 337, 538
NlaIV GGNNCC 3 cut(s) 6, 339, 407
NmuCI GTSAC 1 cut(s) 500
PfeI GAWTC 2 cut(s) 229, 290
PkrI GCNGC 2 cut(s) 102, 146
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PspN4I GGNNCC 3 cut(s) 6, 339, 407
PspPI GGNCC 2 cut(s) 406, 515
PsuI RGATCY 4 cut(s) 4, 132, 170, 337
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SaqAI TTAA 5 cut(s) 17, 92, 222, 333, 429
SatI GCNGC 2 cut(s) 101, 145
Sau3AI GATC 5 cut(s) 4, 132, 170, 337, 538
Sau96I GGNCC 2 cut(s) 406, 515
SchI GAGTC 1 cut(s) 211
SinI GGWCC 2 cut(s) 406, 515
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
Sse9I AATT 3 cut(s) 18, 84, 386
SspMI CTAG 2 cut(s) 342, 562
TaiI ACGT 1 cut(s) 59
TasI AATT 3 cut(s) 18, 84, 386
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 2 cut(s) 229, 290
Tru1I TTAA 5 cut(s) 17, 92, 222, 333, 429
Tru9I TTAA 5 cut(s) 17, 92, 222, 333, 429
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 2 cut(s) 100, 144
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 1 cut(s) 198
VpaK11BI GGWCC 2 cut(s) 406, 515
XspI CTAG 2 cut(s) 342, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.