FvH4_6g49581

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000424
Physical Location & Seq
Forward (+)
37127615 .. 37129017
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49581.t1

Sequence Viewer

Length: 840 bp
ATGAAAACCAAAACTCCTCTCTCACTTGTTCTTATACCAGAAGATCTACAAGACGACTCCAAAGATTTCTCTGTATCGATTTCTTTCGACGGAGATGTATTAGGTAACAATGCGGTGATAATTCCGCAGCCATTGGAAGTGAAACAACCCGGCAACCGTATCAACATAGTGGGTTGCTGTAACGGTTTGGTTAAAGAGAATTCCTTCCACACCCTTCAACCCTCCAAAAACGTTGTCTTCAGATTAACCACGTACGGGTTTGGGTACGCTTCCACCAACGATGACTATAAATTTGTGAGGGGCGAGATATTTACTAATAATTGTAAGGATTCGGAAGTGAAAATTTATAGCTCAAAAACCAACTCATGGAAACAGATCCAACACTTCCCTTATGAGCTCAAACCACCATGGTTTATAAACCATCGATCCTATGTGAATGGTTCTGTACATTGGCTGGCGAATCGTAACAAGATCATAGCTCTTGACCTTGCAACTGAGAAGTACAACGTTTTTCCAGCCCCGATTGTTGGCAATGCCGATCCTAAGAGACTAGGGCCCTTGGGAGGATTACCGTATTTTATACATCTCACTTGTTTGCATGAAATTTGGATTATGAAGGAGTATGGGTGGCAGTCTTGGACACAGCTATATGCTATAGATACAACGGAATTGCCTCGGTATGCTTTTCATCATTGGGAACCCTTTGTGCTCTCAAAGAGCGGCAAGCAGTCCCAAATAGTAAAAGCAGCAACGCCGCTCTACAAGGCAATGGAATATGACGCCGCCCTTCTCGGAGATGCTAGTAAAAGCACCGTCAACGAAATCAGGCTTTATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

280

Amino Acids

31.75

Weight (kDa)

8.21

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 72 - 238 2.2e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
AccB7I CCANNNNNTGG 1 cut(s) 366
AccBSI CCGCTC 2 cut(s) 720, 757
AciI CCGC 5 cut(s) 113, 125, 720, 755, 783
AclI AACGTT 2 cut(s) 231, 507
AclWI GGATC 3 cut(s) 370, 420, 533
AcsI RAATTY 4 cut(s) 199, 290, 342, 603
AcuI CTGAAG 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 780
AfaI GTAC 4 cut(s) 254, 266, 447, 503
AfiI CCNNNNNNNGG 4 cut(s) 255, 366, 527, 563
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 4 cut(s) 351, 397, 479, 646
AluI AGCT 4 cut(s) 351, 397, 479, 646
Alw21I GWGCWC 2 cut(s) 399, 711
Alw26I GTCTC 1 cut(s) 541
AlwI GGATC 3 cut(s) 370, 420, 533
AoxI GGCC 1 cut(s) 554
ApaI GGGCCC 1 cut(s) 558
ApeKI GCWGC 2 cut(s) 127, 746
ApoI RAATTY 4 cut(s) 199, 290, 342, 603
ArsI GACNNNNNNTTYG 4 cut(s) 219, 251, 275, 307
Asp700I GAANNNNTTC 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 554, 555
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 558
BanII GRGCYC 2 cut(s) 399, 558
BbsI GAAGAC 1 cut(s) 229
Bbv12I GWGCWC 2 cut(s) 399, 711
BbvI GCAGC 2 cut(s) 139, 758
BccI CCATC 1 cut(s) 429
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 541
BfaI CTAG 2 cut(s) 551, 801
BfmI CTRYAG 1 cut(s) 654
BglII AGATCT 1 cut(s) 43
BisI GCNGC 5 cut(s) 128, 721, 747, 755, 783
BlsI GCNGC 5 cut(s) 129, 722, 748, 756, 784
Bme1390I CCNGG 1 cut(s) 150
BmgT120I GGNCC 2 cut(s) 554, 555
BmiI GGNNCC 2 cut(s) 556, 699
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 787
BpiI GAAGAC 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 150
Bsa29I ATCGAT 2 cut(s) 77, 424
BsaAI YACGTR 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 780
BsaJI CCNNGG 3 cut(s) 407, 558, 674
BsaXI ACNNNNNCTCC 3 cut(s) 28, 611, 641
Bsc4I CCNNNNNNNGG 4 cut(s) 255, 366, 527, 563
Bse3DI GCAATG 2 cut(s) 538, 774
BseCI ATCGAT 2 cut(s) 77, 424
BseDI CCNNGG 3 cut(s) 407, 558, 674
BseLI CCNNNNNNNGG 4 cut(s) 255, 366, 527, 563
BseMI GCAATG 2 cut(s) 538, 774
BseMII CTCAG 1 cut(s) 486
BseRI GAGGAG 1 cut(s) 6
BseSI GKGCMC 1 cut(s) 558
BseXI GCAGC 2 cut(s) 139, 758
BshFI GGCC 1 cut(s) 556
BshVI ATCGAT 2 cut(s) 77, 424
BsiHKAI GWGCWC 2 cut(s) 399, 711
BsiSI CCGG 1 cut(s) 150
BsiWI CGTACG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 4 cut(s) 255, 366, 527, 563
BsmAI GTCTC 1 cut(s) 541
BsmFI GGGAC 1 cut(s) 715
BsnI GGCC 1 cut(s) 556
Bsp120I GGGCCC 1 cut(s) 554
Bsp1286I GDGCHC 3 cut(s) 399, 558, 711
Bsp1407I TGTACA 1 cut(s) 445
Bsp143I GATC 5 cut(s) 43, 375, 425, 471, 538
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 5 cut(s) 113, 125, 720, 755, 783
BspANI GGCC 1 cut(s) 556
BspCNI CTCAG 1 cut(s) 487
BspDI ATCGAT 2 cut(s) 77, 424
BspLI GGNNCC 2 cut(s) 556, 699
BspPI GGATC 3 cut(s) 370, 420, 533
BsrBI CCGCTC 2 cut(s) 720, 757
BsrDI GCAATG 2 cut(s) 538, 774
BsrGI TGTACA 1 cut(s) 445
BssECI CCNNGG 3 cut(s) 407, 558, 674
BssMI GATC 5 cut(s) 43, 375, 425, 471, 538
BssNI GRCGYC 1 cut(s) 780
BssT1I CCWWGG 2 cut(s) 407, 558
Bst4CI ACNGT 4 cut(s) 158, 185, 573, 814
BstACI GRCGYC 1 cut(s) 780
BstAUI TGTACA 1 cut(s) 445
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 456, 725
BstDEI CTNAG 2 cut(s) 495, 543
BstDSI CCRYGG 1 cut(s) 407
BstKTI GATC 5 cut(s) 46, 378, 428, 474, 541
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 5 cut(s) 43, 375, 425, 471, 538
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 654
BstSLI GKGCMC 1 cut(s) 558
BstV1I GCAGC 2 cut(s) 139, 758
BstV2I GAAGAC 1 cut(s) 229
BstX2I RGATCY 2 cut(s) 43, 375
BstYI RGATCY 2 cut(s) 43, 375
Bsu15I ATCGAT 2 cut(s) 77, 424
BsuRI GGCC 1 cut(s) 556
BsuTUI ATCGAT 2 cut(s) 77, 424
BtgI CCRYGG 1 cut(s) 407
Cac8I GCNNGC 2 cut(s) 456, 725
Cfr13I GGNCC 2 cut(s) 554, 555
ClaI ATCGAT 2 cut(s) 77, 424
CseI GACGC 1 cut(s) 788
Csp6I GTAC 4 cut(s) 253, 265, 446, 502
CviAII CATG 3 cut(s) 366, 408, 599
CviJI RGCY 9 cut(s) 130, 351, 397, 454, 479, 518, 556, 646, 829
CviKI_1 RGCY 9 cut(s) 130, 351, 397, 454, 479, 518, 556, 646, 829
CviQI GTAC 4 cut(s) 253, 265, 446, 502
DdeI CTNAG 2 cut(s) 495, 543
DpnI GATC 5 cut(s) 45, 377, 427, 473, 540
DpnII GATC 5 cut(s) 43, 375, 425, 471, 538
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 2 cut(s) 407, 558
Eco24I GRGCYC 2 cut(s) 399, 558
Eco53kI GAGCTC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 397
EcoO109I RGGNCCY 2 cut(s) 554, 555
EcoRI GAATTC 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 407, 558
EcoT38I GRGCYC 2 cut(s) 399, 558
ErhI CCWWGG 2 cut(s) 407, 558
FaeI CATG 3 cut(s) 369, 411, 602
FaqI GGGAC 1 cut(s) 715
FatI CATG 3 cut(s) 365, 407, 598
Fnu4HI GCNGC 5 cut(s) 128, 721, 747, 755, 783
FriOI GRGCYC 2 cut(s) 399, 558
Fsp4HI GCNGC 5 cut(s) 128, 721, 747, 755, 783
FspBI CTAG 2 cut(s) 551, 801
GluI GCNGC 5 cut(s) 128, 721, 747, 755, 783
HaeIII GGCC 1 cut(s) 556
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 788
Hin1I GRCGYC 1 cut(s) 780
Hin1II CATG 3 cut(s) 369, 411, 602
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HinfI GANTC 3 cut(s) 56, 329, 460
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 817
Hpy188I TCNGA 3 cut(s) 242, 334, 794
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 1 cut(s) 817
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 4 cut(s) 214, 224, 610, 797
HpyCH4III ACNGT 4 cut(s) 158, 185, 573, 814
HpyCH4IV ACGT 3 cut(s) 231, 251, 507
HpyCH4V TGCA 2 cut(s) 491, 598
HpyF3I CTNAG 2 cut(s) 495, 543
HpySE526I ACGT 3 cut(s) 231, 251, 507
Hsp92I GRCGYC 1 cut(s) 780
Hsp92II CATG 3 cut(s) 369, 411, 602
Kzo9I GATC 5 cut(s) 43, 375, 425, 471, 538
LpnPI CCDG 5 cut(s) 51, 163, 440, 528, 811
Lsp1109I GCAGC 2 cut(s) 139, 758
LweI GCATC 1 cut(s) 787
MaeI CTAG 2 cut(s) 551, 801
MaeII ACGT 3 cut(s) 231, 251, 507
MaeIII GTNAC 3 cut(s) 104, 179, 464
MalI GATC 5 cut(s) 45, 377, 427, 473, 540
MbiI CCGCTC 2 cut(s) 720, 757
MboI GATC 5 cut(s) 43, 375, 425, 471, 538
MboII GAAGA 2 cut(s) 53, 229
MflI RGATCY 2 cut(s) 43, 375
MhlI GDGCHC 3 cut(s) 399, 558, 711
MluCI AATT 7 cut(s) 120, 199, 290, 319, 342, 603, 668
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 5 cut(s) 27, 232, 291, 557, 684
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 2 cut(s) 192, 245
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 150
NciI CCSGG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 407
NdeII GATC 5 cut(s) 43, 375, 425, 471, 538
NlaIII CATG 3 cut(s) 369, 411, 602
NlaIV GGNNCC 2 cut(s) 556, 699
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 329, 460
Pfl23II CGTACG 1 cut(s) 252
PflMI CCANNNNNTGG 1 cut(s) 366
PkrI GCNGC 5 cut(s) 129, 722, 748, 756, 784
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Ppu21I YACGTR 1 cut(s) 252
PsiI TTATAA 1 cut(s) 416
Psp124BI GAGCTC 1 cut(s) 399
Psp1406I AACGTT 2 cut(s) 231, 507
PspLI CGTACG 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 556, 699
PspOMI GGGCCC 1 cut(s) 554
PspPI GGNCC 2 cut(s) 554, 555
PsuI RGATCY 2 cut(s) 43, 375
RsaI GTAC 4 cut(s) 254, 266, 447, 503
RsaNI GTAC 4 cut(s) 253, 265, 446, 502
SacI GAGCTC 1 cut(s) 399
SaqAI TTAA 2 cut(s) 192, 245
SatI GCNGC 5 cut(s) 128, 721, 747, 755, 783
Sau3AI GATC 5 cut(s) 43, 375, 425, 471, 538
Sau96I GGNCC 2 cut(s) 554, 555
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 3 cut(s) 399, 558, 711
SetI ASST 9 cut(s) 106, 234, 254, 353, 399, 481, 489, 510, 648
SfaNI GCATC 1 cut(s) 787
SfcI CTRYAG 1 cut(s) 654
Sse9I AATT 7 cut(s) 120, 199, 290, 319, 342, 603, 668
SsiI CCGC 5 cut(s) 113, 125, 720, 755, 783
SspMI CTAG 2 cut(s) 551, 801
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 2 cut(s) 407, 558
TaaI ACNGT 4 cut(s) 158, 185, 573, 814
TaiI ACGT 3 cut(s) 234, 254, 510
TaqI TCGA 3 cut(s) 77, 87, 424
TasI AATT 7 cut(s) 120, 199, 290, 319, 342, 603, 668
TatI WGTACW 2 cut(s) 445, 501
TauI GCSGC 3 cut(s) 723, 757, 785
TfiI GAWTC 2 cut(s) 329, 460
Tru1I TTAA 2 cut(s) 192, 245
Tru9I TTAA 2 cut(s) 192, 245
TseI GCWGC 2 cut(s) 127, 746
TspDTI ATGAA 4 cut(s) 17, 615, 629, 677
TspGWI ACGGA 2 cut(s) 105, 680
Van91I CCANNNNNTGG 1 cut(s) 366
XapI RAATTY 4 cut(s) 199, 290, 342, 603
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 2 cut(s) 551, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.