MD07G1059200.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000424
Physical Location & Seq
Reverse (-)
5508343 .. 5509529
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1059200.v1.1.491

Sequence Viewer

Length: 1125 bp
ATGATTAGGTGGAATCCTTTCCTGATTTCTCCAGATTATTGTTGCTCCTCAGAGAAGAAACCAACGTCAATGTCAGACTTCCCACCGGAGCTACTGTTCGACATCCTATCAAGGCTTCCGCCCAAGGATTTGATTCGATTCCTCAGCGTTTCCAAAGCTTGGAATGCCATCATCCGCCACCACCACTTCATCAAAGCTCATCTTCAACGCTCCATCCAAACCAATTCCTTTCGCACCATTTTAGTCAGGTCAATTGGCTCCCCCTCATTAGATTATTTTTCATCGGCTGTCAACGGCAGCGAAACGTTCCGGACAGTCGTTAAAATTGAGCGGCCGTTGAAATCCCCTGAGAGGTATCAGATACTGGGGTGCTCGATTCATGGAGTGGTTTGCATTTGCAATAGTCTCCGTACGAATGTCGCTTTGTGGAACCCGTCAATTCAAAAGTTTAAGATGATTCCCCTCCCAGCCATTGAGCAGCAGCAGCCATCATCAGATTTACATATATCCCTAGGGTTCGGGTATGATTCAGTTTATGATGACTTTAAACATTTGCGAATTGCGGAGCTTAGTAAGGGAGTCTTTAACTTGCCTCGCAATGATTTTAGTACACTGAATGTGTATGACACGGCGCTGGAGTTTTTAAATGGTGCTCTGTGTTGGCTAATGCCGAACAGATTAGATATGTATCGATTCATAATTCTGACCCTTGATCTTGCTACTGAAAAGTATCGGGAGTTTGACACCCCGGTGGATGAGGATTACAGTACCGTCATGGAGTTGGAGGTTTTAGTGGGCTCTCTATGTGTTTATGTTCATGATTGGGACACCGGAAATGATGTTTGGATTATGAAGGATTTTGGAGGACCTTGGACCCTTCTGTATTCTATTAAAAAGGAAACTATGACTTGGTTGCTTAACTATTGCCCACCTTTGGTCTTTTCAAAGAACGGTGAAATGGTTCTTTTGAAGGAGGACGAGGAAGCATTTGTTTGGTTTGATTTAAAGGGAAAAATTGGATACCAAGATAATATTTGCGGTCTGCCAGTTCGCTTTGATGCAAAGATTTGCGAGGGCAGCCTTTGTCTTATTGATGGTGATCCCGTGATTGGTTGGAGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

375

Amino Acids

43.01

Weight (kDa)

5.67

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 63 3.8e-11 F-box domain
F-box-like PF12937 25 - 61 2.6e-09 F-box-like
FBA_3 PF08268 93 - 326 5.9e-09 F-box associated beta propeller domain
FBA_1 PF07734 115 - 335 1.3e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 159
AccBSI CCGCTC 1 cut(s) 331
AccIII TCCGGA 1 cut(s) 309
AciI CCGC 5 cut(s) 119, 175, 331, 563, 1038
AclI AACGTT 1 cut(s) 305
AclWI GGATC 1 cut(s) 1094
AcoI YGGCCR 1 cut(s) 332
AfaI GTAC 3 cut(s) 412, 610, 769
AfiI CCNNNNNNNGG 4 cut(s) 159, 351, 934, 1109
AgsI TTSAA 5 cut(s) 206, 340, 443, 945, 970
AjuI GAANNNNNNNTTGG 2 cut(s) 826, 858
AleI CACNNNNGTG 1 cut(s) 749
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 4 cut(s) 91, 158, 197, 568
AluI AGCT 4 cut(s) 91, 158, 197, 568
Alw21I GWGCWC 2 cut(s) 374, 655
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 1 cut(s) 1094
AlwNI CAGNNNCTG 1 cut(s) 364
Aor13HI TCCGGA 1 cut(s) 309
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 5 cut(s) 297, 478, 481, 484, 1077
Asp700I GAANNNNTTC 2 cut(s) 17, 960
AspA2I CCTAGG 1 cut(s) 511
AspLEI GCGC 1 cut(s) 634
AspS9I GGNCC 2 cut(s) 866, 873
AsuC2I CCSGG 1 cut(s) 749
AsuHPI GGTGA 2 cut(s) 965, 1109
AvaII GGWCC 2 cut(s) 866, 873
AvrII CCTAGG 1 cut(s) 511
BaeI ACNNNNGTAYC 2 cut(s) 353, 386
BanII GRGCYC 1 cut(s) 800
Bbv12I GWGCWC 2 cut(s) 374, 655
BbvCI CCTCAGC 1 cut(s) 143
BbvI GCAGC 5 cut(s) 309, 490, 493, 496, 1089
BccI CCATC 4 cut(s) 176, 221, 496, 1088
BceAI ACGGC 3 cut(s) 310, 319, 645
BciVI GTATCC 1 cut(s) 1013
BcnI CCSGG 1 cut(s) 749
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 1 cut(s) 512
BfoI RGCGCY 1 cut(s) 635
BfuI GTATCC 1 cut(s) 1013
BisI GCNGC 6 cut(s) 298, 332, 479, 482, 485, 1078
BlnI CCTAGG 1 cut(s) 511
BlsI GCNGC 6 cut(s) 299, 333, 480, 483, 486, 1079
Bme1390I CCNGG 1 cut(s) 749
Bme18I GGWCC 2 cut(s) 866, 873
BmgT120I GGNCC 2 cut(s) 866, 873
BmiI GGNNCC 3 cut(s) 259, 431, 875
BmrFI CCNGG 1 cut(s) 749
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 1048
BmuI ACTGGG 1 cut(s) 374
BpmI CTGGAG 2 cut(s) 15, 656
Bpu10I CCTNAGC 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 749
Bsa29I ATCGAT 1 cut(s) 691
BsaBI GATNNNNATC 2 cut(s) 687, 1098
BsaJI CCNNGG 4 cut(s) 123, 511, 747, 869
BsaWI WCCGGW 3 cut(s) 85, 309, 830
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 351, 934, 1109
Bse1I ACTGG 2 cut(s) 369, 1046
Bse3DI GCAATG 1 cut(s) 604
Bse8I GATNNNNATC 2 cut(s) 687, 1098
BseAI TCCGGA 1 cut(s) 309
BseCI ATCGAT 1 cut(s) 691
BseDI CCNNGG 4 cut(s) 123, 511, 747, 869
BseGI GGATG 4 cut(s) 102, 171, 213, 760
BseJI GATNNNNATC 2 cut(s) 687, 1098
BseLI CCNNNNNNNGG 4 cut(s) 159, 351, 934, 1109
BseMI GCAATG 1 cut(s) 604
BseMII CTCAG 3 cut(s) 63, 157, 339
BseNI ACTGG 2 cut(s) 369, 1046
BseRI GAGGAG 1 cut(s) 37
BseX3I CGGCCG 1 cut(s) 332
BseXI GCAGC 5 cut(s) 309, 490, 493, 496, 1089
BseYI CCCAGC 1 cut(s) 466
Bsh1285I CGRYCG 1 cut(s) 335
BshFI GGCC 1 cut(s) 334
BshVI ATCGAT 1 cut(s) 691
BsiEI CGRYCG 1 cut(s) 335
BsiHKAI GWGCWC 2 cut(s) 374, 655
BsiSI CCGG 4 cut(s) 86, 310, 749, 831
BsiWI CGTACG 1 cut(s) 410
BslFI GGGAC 1 cut(s) 839
BslI CCNNNNNNNGG 4 cut(s) 159, 351, 934, 1109
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 839
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 1 cut(s) 334
Bsp1286I GDGCHC 3 cut(s) 374, 655, 800
Bsp13I TCCGGA 1 cut(s) 309
Bsp143I GATC 2 cut(s) 712, 1099
BspACI CCGC 5 cut(s) 119, 175, 331, 563, 1038
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 3 cut(s) 62, 156, 340
BspDI ATCGAT 1 cut(s) 691
BspEI TCCGGA 1 cut(s) 309
BspHI TCATGA 1 cut(s) 817
BspLI GGNNCC 3 cut(s) 259, 431, 875
BspPI GGATC 1 cut(s) 1094
BsrBI CCGCTC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 604
BsrI ACTGG 2 cut(s) 369, 1046
BssECI CCNNGG 4 cut(s) 123, 511, 747, 869
BssMI GATC 2 cut(s) 712, 1099
BssT1I CCWWGG 3 cut(s) 123, 511, 869
Bst4CI ACNGT 5 cut(s) 96, 316, 767, 772, 953
BstDEI CTNAG 4 cut(s) 49, 143, 348, 569
BstF5I GGATG 4 cut(s) 102, 171, 213, 760
BstH2I RGCGCY 1 cut(s) 635
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 2 cut(s) 715, 1102
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 2 cut(s) 712, 1099
BstMCI CGRYCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 3 cut(s) 164, 484, 1077
BstSCI CCNGG 1 cut(s) 747
BstV1I GCAGC 5 cut(s) 309, 490, 493, 496, 1089
BstZI CGGCCG 1 cut(s) 332
Bsu15I ATCGAT 1 cut(s) 691
BsuI GTATCC 1 cut(s) 1013
BsuRI GGCC 1 cut(s) 334
BsuTUI ATCGAT 1 cut(s) 691
BtsCI GGATG 4 cut(s) 102, 171, 213, 760
BtsIMutI CAGTG 1 cut(s) 611
CaiI CAGNNNCTG 1 cut(s) 364
CciI TCATGA 1 cut(s) 817
CfoI GCGC 1 cut(s) 634
Cfr13I GGNCC 2 cut(s) 866, 873
ClaI ATCGAT 1 cut(s) 691
Csp6I GTAC 3 cut(s) 411, 609, 768
CviAII CATG 3 cut(s) 380, 775, 818
CviQI GTAC 3 cut(s) 411, 609, 768
DdeI CTNAG 4 cut(s) 49, 143, 348, 569
DpnI GATC 2 cut(s) 714, 1101
DpnII GATC 2 cut(s) 712, 1099
DraI TTTAAA 3 cut(s) 547, 645, 1005
EaeI YGGCCR 1 cut(s) 332
EagI CGGCCG 1 cut(s) 332
EciI GGCGGA 2 cut(s) 108, 164
EclXI CGGCCG 1 cut(s) 332
Eco130I CCWWGG 3 cut(s) 123, 511, 869
Eco24I GRGCYC 1 cut(s) 800
Eco47I GGWCC 2 cut(s) 866, 873
Eco52I CGGCCG 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 866
EcoT14I CCWWGG 3 cut(s) 123, 511, 869
EcoT38I GRGCYC 1 cut(s) 800
ErhI CCWWGG 3 cut(s) 123, 511, 869
FaeI CATG 3 cut(s) 383, 778, 821
FalI AAGNNNNNCTT 4 cut(s) 186, 218, 566, 598
FaqI GGGAC 1 cut(s) 839
FatI CATG 3 cut(s) 379, 774, 817
Fnu4HI GCNGC 6 cut(s) 298, 332, 479, 482, 485, 1078
FokI GGATG 4 cut(s) 89, 158, 200, 767
FriOI GRGCYC 1 cut(s) 800
Fsp4HI GCNGC 6 cut(s) 298, 332, 479, 482, 485, 1078
FspBI CTAG 1 cut(s) 512
GlaI GCGC 1 cut(s) 633
GluI GCNGC 6 cut(s) 298, 332, 479, 482, 485, 1078
GsaI CCCAGC 1 cut(s) 470
GsuI CTGGAG 2 cut(s) 15, 656
HaeII RGCGCY 1 cut(s) 635
HaeIII GGCC 1 cut(s) 334
HapII CCGG 4 cut(s) 86, 310, 749, 831
HhaI GCGC 1 cut(s) 634
Hin1II CATG 3 cut(s) 383, 778, 821
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 8 cut(s) 13, 133, 138, 376, 457, 527, 579, 693
HpaII CCGG 4 cut(s) 86, 310, 749, 831
HphI GGTGA 2 cut(s) 965, 1109
Hpy166II GTNNAC 2 cut(s) 292, 611
Hpy188I TCNGA 5 cut(s) 52, 76, 360, 496, 705
Hpy188III TCNNGA 5 cut(s) 22, 32, 310, 734, 818
Hpy8I GTNNAC 2 cut(s) 292, 611
HpyAV CCTTC 3 cut(s) 847, 887, 964
HpyCH4III ACNGT 5 cut(s) 96, 316, 767, 772, 953
HpyCH4IV ACGT 2 cut(s) 65, 305
HpyCH4V TGCA 3 cut(s) 393, 399, 1061
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 484, 1077
HpyF3I CTNAG 4 cut(s) 49, 143, 348, 569
HpySE526I ACGT 2 cut(s) 65, 305
Hsp92II CATG 3 cut(s) 383, 778, 821
HspAI GCGC 1 cut(s) 632
Kpn2I TCCGGA 1 cut(s) 309
Kzo9I GATC 2 cut(s) 712, 1099
LmnI GCTCC 5 cut(s) 50, 88, 215, 263, 565
Lsp1109I GCAGC 5 cut(s) 309, 490, 493, 496, 1089
LweI GCATC 1 cut(s) 1048
MaeI CTAG 1 cut(s) 512
MaeII ACGT 2 cut(s) 65, 305
MalI GATC 2 cut(s) 714, 1101
MbiI CCGCTC 1 cut(s) 331
MboI GATC 2 cut(s) 712, 1099
MboII GAAGA 2 cut(s) 67, 194
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 3 cut(s) 374, 655, 800
MluCI AATT 7 cut(s) 223, 252, 324, 438, 558, 699, 1014
MlyI GAGTC 1 cut(s) 588
MmeI TCCRAC 2 cut(s) 762, 1094
MroI TCCGGA 1 cut(s) 309
MroXI GAANNNNTTC 2 cut(s) 17, 960
MseI TTAA 8 cut(s) 321, 450, 546, 585, 644, 891, 918, 1004
MslI CAYNNNNRTG 1 cut(s) 749
MspI CCGG 4 cut(s) 86, 310, 749, 831
MspR9I CCNGG 1 cut(s) 749
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 169
MwoI GCNNNNNNNGC 3 cut(s) 164, 484, 1077
NciI CCSGG 1 cut(s) 749
NdeII GATC 2 cut(s) 712, 1099
NlaIII CATG 3 cut(s) 383, 778, 821
NlaIV GGNNCC 3 cut(s) 259, 431, 875
OliI CACNNNNGTG 1 cut(s) 749
PagI TCATGA 1 cut(s) 817
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 2 cut(s) 17, 960
PfeI GAWTC 7 cut(s) 13, 133, 138, 376, 457, 527, 693
Pfl23II CGTACG 1 cut(s) 410
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 6 cut(s) 299, 333, 480, 483, 486, 1079
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
PpuMI RGGWCCY 1 cut(s) 866
Psp1406I AACGTT 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 866
PspFI CCCAGC 1 cut(s) 466
PspLI CGTACG 1 cut(s) 410
PspN4I GGNNCC 3 cut(s) 259, 431, 875
PspPI GGNCC 2 cut(s) 866, 873
PspPPI RGGWCCY 1 cut(s) 866
PstNI CAGNNNCTG 1 cut(s) 364
RsaI GTAC 3 cut(s) 412, 610, 769
RsaNI GTAC 3 cut(s) 411, 609, 768
RseI CAYNNNNRTG 1 cut(s) 749
SaqAI TTAA 8 cut(s) 321, 450, 546, 585, 644, 891, 918, 1004
SatI GCNGC 6 cut(s) 298, 332, 479, 482, 485, 1078
Sau3AI GATC 2 cut(s) 712, 1099
Sau96I GGNCC 2 cut(s) 866, 873
SchI GAGTC 1 cut(s) 588
ScrFI CCNGG 1 cut(s) 749
SduI GDGCHC 3 cut(s) 374, 655, 800
SfaNI GCATC 1 cut(s) 1048
SinI GGWCC 2 cut(s) 866, 873
SmiMI CAYNNNNRTG 1 cut(s) 749
Sse9I AATT 7 cut(s) 223, 252, 324, 438, 558, 699, 1014
SsiI CCGC 5 cut(s) 119, 175, 331, 563, 1038
SspI AATATT 1 cut(s) 1033
SspMI CTAG 1 cut(s) 512
StyD4I CCNGG 1 cut(s) 747
StyI CCWWGG 3 cut(s) 123, 511, 869
TaaI ACNGT 5 cut(s) 96, 316, 767, 772, 953
TaiI ACGT 2 cut(s) 68, 308
TaqI TCGA 4 cut(s) 99, 136, 374, 691
TasI AATT 7 cut(s) 223, 252, 324, 438, 558, 699, 1014
TatI WGTACW 1 cut(s) 608
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 7 cut(s) 13, 133, 138, 376, 457, 527, 693
Tru1I TTAA 8 cut(s) 321, 450, 546, 585, 644, 891, 918, 1004
Tru9I TTAA 8 cut(s) 321, 450, 546, 585, 644, 891, 918, 1004
TscAI CASTG 1 cut(s) 618
TseI GCWGC 5 cut(s) 297, 478, 481, 484, 1077
TspDTI ATGAA 6 cut(s) 178, 270, 368, 685, 806, 866
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 1 cut(s) 618
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 866, 873
XmaJI CCTAGG 1 cut(s) 511
XmnI GAANNNNTTC 2 cut(s) 17, 960
XspI CTAG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.