Prupe.1G024500_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000424
Physical Location & Seq
Forward (+)
1697388 .. 1699337
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G024500.1

Sequence Viewer

Length: 1257 bp
ATGTCCTTCCTCCCACCGGAGCTAATCTTCGACATTCTTTCACGGCTTCCGCCCAAGGATTTGATGCGATTCCTCTGTGTTTCCGAAGCTTGGTATGCTTTAATCCACGACCAAATCTTCATCAAAGCCCATCTCCAGCGCTCCATTGAAACCAACTCTGCTCCTCTAACCATTTTACTCAGGAAATTTAGTCCCGAATGTCCTCCATCACATTTCTTTTCATTGTCCTTCAGCGACAACGAGACGATCGGGACAGCAGTGAAAACCGAGCAGCCGCTGAAATGCCCTGACGAATACACTGACATTTTATTGGACTACTCTGTTCATGGTCTGGTTTGGATTCACAACGATGACGAGAGCGATATGGCTTTGTGGAACCCTTCAATTCAAAAGTTCAAGAAGATTCACGTCCCGAACTTTGAACCGGATGCATCATCATCTTCTGGTTCAGAGATGGAGCAACGAAGAGAACCAAGGGACACCTGTTATGGCTTCGGGTATGATTCTGTTCATGATGACTATAAACTTGTGCAAATTTTCGAGTTCGCAAATGAAGGCAGAATTGTGGGTTCTCAAGTTCACATTTATAGCCTAAAATCTAACTCATGGAAAAGGATCCAAGACATGCCTTGGAATTGTTTTGGAATTCATCACGATTATCTCATGTTTTGCGACGGTGCTCTGAGTTGCCTCGTTTATAACAGGTTATGTACAAATCAGGTCATAATTCTAACCCTTAGTCTCGCCAGTGAGAAATATTGCCAGTGTCGCATCCCGGTCCATCATCTGAGTATTAATGAGTCTAGGCTGATTTTGACGGTCTTGGGGGGTTGTTTATGTCTTTGTGATACTTTTTTGGAGACCCAACATGATGTTTGGATTATGAAAGAATATGGAGTCGCAGAATCTTGGACCCTGCTTTATTCCATTGAGGGGGGAGATTTGCCCTGGTCGATTGATTTTATGTGCGTACCTTTGGTGTTCTCAAGGGATGGTGAAATGGTTCTCTTGTCGGATAACAACACTACGTTTTTTTGGTATGATTTGAAGGGGAAGAGTTTTAAACGAGCTCAATTTCATGGTCGGCCCTATTTATATGAAATGACAGTTGTTTGTTGGGGGAGCCTTTGTCTTCTTGATGGTGATCCTGTTATTGCTGAGCCTGAGACTGAGAGGCAGCAGAAAGTCCCCACTACTTCTACGAAAAGCAAATATTCAAGCAGCGAAGACGAAGAAACGTATGATGATTGGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

419

Amino Acids

48.26

Weight (kDa)

4.95

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AciI CCGC 2 cut(s) 50, 275
AclWI GGATC 3 cut(s) 610, 623, 1139
AcsI RAATTY 3 cut(s) 185, 534, 645
AcuI CTGAAG 1 cut(s) 214
AfaI GTAC 3 cut(s) 712, 972, 1253
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 16, 90, 933
AgsI TTSAA 7 cut(s) 149, 384, 389, 397, 422, 1048, 1218
AjiI CACGTC 1 cut(s) 409
AjnI CCWGG 1 cut(s) 947
AluBI AGCT 3 cut(s) 22, 89, 1070
AluI AGCT 3 cut(s) 22, 89, 1070
Alw21I GWGCWC 2 cut(s) 682, 1072
Alw26I GTCTC 4 cut(s) 236, 746, 854, 1160
AlwI GGATC 3 cut(s) 610, 623, 1139
AlwNI CAGNNNCTG 1 cut(s) 277
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 1 cut(s) 1085
ApeKI GCWGC 3 cut(s) 271, 1177, 1221
ApoI RAATTY 3 cut(s) 185, 534, 645
AseI ATTAAT 1 cut(s) 795
Asp700I GAANNNNTTC 1 cut(s) 1002
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 3 cut(s) 778, 912, 1086
AsuC2I CCSGG 1 cut(s) 776
AsuHPI GGTGA 2 cut(s) 1007, 1154
AvaII GGWCC 2 cut(s) 778, 912
BamHI GGATCC 1 cut(s) 615
BanII GRGCYC 1 cut(s) 1072
BbsI GAAGAC 2 cut(s) 1124, 1233
Bbv12I GWGCWC 2 cut(s) 682, 1072
BbvI GCAGC 3 cut(s) 283, 1189, 1233
BccI CCATC 6 cut(s) 138, 214, 448, 789, 986, 1133
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 949
BcnI CCSGG 1 cut(s) 776
BcoDI GTCTC 4 cut(s) 236, 746, 854, 1160
BfaI CTAG 2 cut(s) 804, 1255
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 4 cut(s) 272, 275, 1178, 1222
BlpI GCTNAGC 1 cut(s) 1158
BlsI GCNGC 4 cut(s) 273, 276, 1179, 1223
Bme1390I CCNGG 2 cut(s) 776, 949
Bme18I GGWCC 2 cut(s) 778, 912
BmgBI CACGTC 1 cut(s) 409
BmgT120I GGNCC 3 cut(s) 778, 912, 1086
BmiI GGNNCC 4 cut(s) 377, 617, 914, 1124
BmrFI CCNGG 2 cut(s) 776, 949
BmsI GCATC 4 cut(s) 54, 418, 440, 780
BpiI GAAGAC 2 cut(s) 1124, 1233
BpmI CTGGAG 1 cut(s) 119
Bpu1102I GCTNAGC 1 cut(s) 1158
BpuEI CTTGAG 2 cut(s) 558, 970
BpuMI CCSGG 1 cut(s) 776
BsaBI GATNNNNATC 1 cut(s) 1143
BsaI GGTCTC 1 cut(s) 854
BsaJI CCNNGG 4 cut(s) 54, 473, 629, 947
BsaWI WCCGGW 2 cut(s) 16, 424
BsaXI ACNNNNNCTCC 2 cut(s) 1114, 1144
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 90, 933
Bse1I ACTGG 2 cut(s) 747, 763
Bse8I GATNNNNATC 1 cut(s) 1143
BseBI CCWGG 1 cut(s) 949
BseDI CCNNGG 4 cut(s) 54, 473, 629, 947
BseGI GGATG 3 cut(s) 433, 771, 997
BseJI GATNNNNATC 1 cut(s) 1143
BseLI CCNNNNNNNGG 3 cut(s) 16, 90, 933
BseMII CTCAG 6 cut(s) 193, 674, 779, 1149, 1155, 1161
BseNI ACTGG 2 cut(s) 747, 763
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 283, 1189, 1233
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 1 cut(s) 1087
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 2 cut(s) 682, 1072
BsiSI CCGG 3 cut(s) 17, 425, 776
BslFI GGGAC 5 cut(s) 177, 265, 395, 491, 1172
BslI CCNNNNNNNGG 3 cut(s) 16, 90, 933
BsmAI GTCTC 4 cut(s) 236, 746, 854, 1160
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 5 cut(s) 177, 265, 395, 491, 1172
BsnI GGCC 1 cut(s) 1087
Bso31I GGTCTC 1 cut(s) 854
Bsp1286I GDGCHC 2 cut(s) 682, 1072
Bsp1407I TGTACA 1 cut(s) 710
Bsp143I GATC 3 cut(s) 246, 615, 1144
Bsp1720I GCTNAGC 1 cut(s) 1158
BspACI CCGC 2 cut(s) 50, 275
BspANI GGCC 1 cut(s) 1087
BspCNI CTCAG 6 cut(s) 192, 675, 780, 1150, 1156, 1162
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 4 cut(s) 377, 617, 914, 1124
BspPI GGATC 3 cut(s) 610, 623, 1139
BspTNI GGTCTC 1 cut(s) 854
BsrGI TGTACA 1 cut(s) 710
BsrI ACTGG 2 cut(s) 747, 763
BssECI CCNNGG 4 cut(s) 54, 473, 629, 947
BssMI GATC 3 cut(s) 246, 615, 1144
BssT1I CCWWGG 3 cut(s) 54, 473, 629
Bst2UI CCWGG 1 cut(s) 949
Bst4CI ACNGT 3 cut(s) 677, 820, 1108
Bst6I CTCTTC 2 cut(s) 460, 1049
BstAUI TGTACA 1 cut(s) 710
BstDEI CTNAG 7 cut(s) 179, 683, 737, 788, 1158, 1164, 1170
BstF5I GGATG 3 cut(s) 433, 771, 997
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 3 cut(s) 249, 618, 1147
BstMAI GTCTC 4 cut(s) 236, 746, 854, 1160
BstMBI GATC 3 cut(s) 246, 615, 1144
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 95, 768
BstNI CCWGG 1 cut(s) 949
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 2 cut(s) 774, 947
BstV1I GCAGC 3 cut(s) 283, 1189, 1233
BstV2I GAAGAC 2 cut(s) 1124, 1233
BstX2I RGATCY 1 cut(s) 615
BstYI RGATCY 1 cut(s) 615
BsuRI GGCC 1 cut(s) 1087
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 3 cut(s) 433, 771, 997
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 4 cut(s) 264, 297, 754, 770
CaiI CAGNNNCTG 1 cut(s) 277
CciI TCATGA 1 cut(s) 511
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 3 cut(s) 778, 912, 1086
Csp6I GTAC 3 cut(s) 711, 971, 1252
CviAII CATG 7 cut(s) 326, 512, 606, 625, 664, 869, 1079
CviQI GTAC 3 cut(s) 711, 971, 1252
DdeI CTNAG 7 cut(s) 179, 683, 737, 788, 1158, 1164, 1170
DpnI GATC 3 cut(s) 248, 617, 1146
DpnII GATC 3 cut(s) 246, 615, 1144
DraI TTTAAA 1 cut(s) 1063
Eam1104I CTCTTC 2 cut(s) 460, 1049
EarI CTCTTC 2 cut(s) 460, 1049
EciI GGCGGA 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 1070
Eco130I CCWWGG 3 cut(s) 54, 473, 629
Eco24I GRGCYC 1 cut(s) 1072
Eco31I GGTCTC 1 cut(s) 854
Eco47I GGWCC 2 cut(s) 778, 912
Eco47III AGCGCT 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 1070
Eco57I CTGAAG 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 1070
EcoRI GAATTC 1 cut(s) 645
EcoRII CCWGG 1 cut(s) 947
EcoT14I CCWWGG 3 cut(s) 54, 473, 629
EcoT22I ATGCAT 1 cut(s) 433
EcoT38I GRGCYC 1 cut(s) 1072
ErhI CCWWGG 3 cut(s) 54, 473, 629
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 7 cut(s) 329, 515, 609, 628, 667, 872, 1082
FaqI GGGAC 5 cut(s) 177, 265, 395, 491, 1172
FatI CATG 7 cut(s) 325, 511, 605, 624, 663, 868, 1078
Fnu4HI GCNGC 4 cut(s) 272, 275, 1178, 1222
FokI GGATG 3 cut(s) 440, 758, 1004
FriOI GRGCYC 1 cut(s) 1072
Fsp4HI GCNGC 4 cut(s) 272, 275, 1178, 1222
FspBI CTAG 2 cut(s) 804, 1255
GlaI GCGC 1 cut(s) 140
GluI GCNGC 4 cut(s) 272, 275, 1178, 1222
GsuI CTGGAG 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 1 cut(s) 1087
HapII CCGG 3 cut(s) 17, 425, 776
HhaI GCGC 1 cut(s) 141
Hin1II CATG 7 cut(s) 329, 515, 609, 628, 667, 872, 1082
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 7 cut(s) 69, 340, 403, 503, 800, 897, 905
HpaII CCGG 3 cut(s) 17, 425, 776
HphI GGTGA 2 cut(s) 1007, 1154
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 5 cut(s) 85, 451, 684, 789, 1015
Hpy188III TCNNGA 8 cut(s) 181, 194, 250, 397, 412, 512, 653, 1136
Hpy8I GTNNAC 1 cut(s) 580
Hpy99I CGWCG 1 cut(s) 677
HpyAV CCTTC 5 cut(s) 16, 238, 390, 548, 1042
HpyCH4III ACNGT 3 cut(s) 677, 820, 1108
HpyCH4IV ACGT 3 cut(s) 408, 1028, 1238
HpyCH4V TGCA 2 cut(s) 431, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 768
HpyF3I CTNAG 7 cut(s) 179, 683, 737, 788, 1158, 1164, 1170
HpySE526I ACGT 3 cut(s) 408, 1028, 1238
Hsp92II CATG 7 cut(s) 329, 515, 609, 628, 667, 872, 1082
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 3 cut(s) 246, 615, 1144
LmnI GCTCC 5 cut(s) 19, 146, 166, 457, 1122
Lsp1109I GCAGC 3 cut(s) 283, 1189, 1233
LweI GCATC 4 cut(s) 54, 418, 440, 780
MaeI CTAG 2 cut(s) 804, 1255
MaeII ACGT 3 cut(s) 408, 1028, 1238
MalI GATC 3 cut(s) 248, 617, 1146
MboI GATC 3 cut(s) 246, 615, 1144
MboII GAAGA 9 cut(s) 19, 109, 412, 432, 477, 1066, 1124, 1238, 1244
MflI RGATCY 1 cut(s) 615
MhlI GDGCHC 2 cut(s) 682, 1072
MluCI AATT 8 cut(s) 185, 384, 534, 561, 634, 645, 726, 1073
MlyI GAGTC 2 cut(s) 809, 906
MmeI TCCRAC 1 cut(s) 993
MnlI CCTC 7 cut(s) 20, 83, 174, 213, 701, 925, 1167
Mph1103I ATGCAT 1 cut(s) 433
MroXI GAANNNNTTC 1 cut(s) 1002
MseI TTAA 3 cut(s) 101, 795, 1062
MslI CAYNNNNRTG 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 3 cut(s) 17, 425, 776
MspR9I CCNGG 2 cut(s) 776, 949
MvaI CCWGG 1 cut(s) 949
MwoI GCNNNNNNNGC 2 cut(s) 95, 768
NciI CCSGG 1 cut(s) 776
NdeII GATC 3 cut(s) 246, 615, 1144
NlaIII CATG 7 cut(s) 329, 515, 609, 628, 667, 872, 1082
NlaIV GGNNCC 4 cut(s) 377, 617, 914, 1124
NsiI ATGCAT 1 cut(s) 433
NspI RCATGY 1 cut(s) 628
PagI TCATGA 1 cut(s) 511
PdmI GAANNNNTTC 1 cut(s) 1002
PfeI GAWTC 5 cut(s) 69, 340, 403, 503, 905
PkrI GCNGC 4 cut(s) 273, 276, 1179, 1223
Ple19I CGATCG 1 cut(s) 249
PleI GAGTC 2 cut(s) 808, 905
PpsI GAGTC 2 cut(s) 808, 905
PshBI ATTAAT 1 cut(s) 795
PsiI TTATAA 1 cut(s) 699
Psp124BI GAGCTC 1 cut(s) 1072
Psp6I CCWGG 1 cut(s) 947
PspGI CCWGG 1 cut(s) 947
PspN4I GGNNCC 4 cut(s) 377, 617, 914, 1124
PspPI GGNCC 3 cut(s) 778, 912, 1086
PstNI CAGNNNCTG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 615
PvuI CGATCG 1 cut(s) 249
RsaI GTAC 3 cut(s) 712, 972, 1253
RsaNI GTAC 3 cut(s) 711, 971, 1252
RseI CAYNNNNRTG 1 cut(s) 348
SacI GAGCTC 1 cut(s) 1072
SaqAI TTAA 3 cut(s) 101, 795, 1062
SatI GCNGC 4 cut(s) 272, 275, 1178, 1222
Sau3AI GATC 3 cut(s) 246, 615, 1144
Sau96I GGNCC 3 cut(s) 778, 912, 1086
SchI GAGTC 2 cut(s) 809, 906
ScrFI CCNGG 2 cut(s) 776, 949
SduI GDGCHC 2 cut(s) 682, 1072
SfaNI GCATC 4 cut(s) 54, 418, 440, 780
SinI GGWCC 2 cut(s) 778, 912
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 2 cut(s) 573, 985
SmoI CTYRAG 2 cut(s) 573, 985
Sse9I AATT 8 cut(s) 185, 384, 534, 561, 634, 645, 726, 1073
SsiI CCGC 2 cut(s) 50, 275
SspI AATATT 2 cut(s) 758, 1214
SspMI CTAG 2 cut(s) 804, 1255
SstI GAGCTC 1 cut(s) 1072
StyD4I CCNGG 2 cut(s) 774, 947
StyI CCWWGG 3 cut(s) 54, 473, 629
TaaI ACNGT 3 cut(s) 677, 820, 1108
TaiI ACGT 3 cut(s) 411, 1031, 1241
TaqI TCGA 3 cut(s) 30, 540, 953
TasI AATT 8 cut(s) 185, 384, 534, 561, 634, 645, 726, 1073
TatI WGTACW 1 cut(s) 710
TauI GCSGC 1 cut(s) 277
TfiI GAWTC 5 cut(s) 69, 340, 403, 503, 905
Tru1I TTAA 3 cut(s) 101, 795, 1062
Tru9I TTAA 3 cut(s) 101, 795, 1062
TscAI CASTG 4 cut(s) 264, 304, 754, 770
TseI GCWGC 3 cut(s) 271, 1177, 1221
TspDTI ATGAA 9 cut(s) 109, 210, 314, 500, 567, 638, 899, 1067, 1113
TspRI CASTG 4 cut(s) 264, 304, 754, 770
VpaK11BI GGWCC 2 cut(s) 778, 912
VspI ATTAAT 1 cut(s) 795
XapI RAATTY 3 cut(s) 185, 534, 645
XceI RCATGY 1 cut(s) 628
XmnI GAANNNNTTC 1 cut(s) 1002
XspI CTAG 2 cut(s) 804, 1255
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.