pycom16g17150

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000424
Physical Location & Seq
Reverse (-)
13233470 .. 13234191
722 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g17150.3

Sequence Viewer

Length: 552 bp
ATGCCACCATCAACGACCATCGCTTCATCAAAGCTCATCTTCAACGCTCCATCCAAACCAATTCCGGTCGAACCATTTTACTCAAGTCAGTTTAAGAAGATTCCCTTCCCAACCCTCGAGATTCAGCAGCAGCAATCCTCAGATTTACAGGTGCTCTCTCAGTACGGATTTGGGTATGATTCCGCTAATCAGGACTATAAAATATTGGCAATTTTGGAGTTTGATATTAGCAGGGATGATGGCACTGTGAGTTCCCAACTTCAGATTTATAGTATGAAATCAAACTCATGGAAAAGGATCCAAAACATGCCTGGGAAGGGTTTTTCAGTGCAGATGGGTAAAAACCGATACATAATTCTAACCCTTGACCTTGCCAGTGAGAAGTATCTGGAGTTTGACACCCCGGTCGATGAGGATGACAATTCTGTGTTGCATTTGCATGTCTTGGGAGGCTCTCTGTTTATTTGTGTTTATGGTTTTCTCGCAAGCTGGGGTAGATGCGCCTCATGTCTACGGTTATTACAAACCTTTGGCGTTCTCAAAGAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

184

Amino Acids

20.67

Weight (kDa)

5.65

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
AccI GTMKAC 1 cut(s) 511
AciI CCGC 1 cut(s) 183
AclWI GGATC 2 cut(s) 292, 305
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 2 cut(s) 34, 489
AluI AGCT 2 cut(s) 34, 489
Alw21I GWGCWC 1 cut(s) 156
AlwI GGATC 2 cut(s) 292, 305
Ama87I CYCGRG 1 cut(s) 116
ApeKI GCWGC 2 cut(s) 127, 130
AspLEI GCGC 1 cut(s) 503
AsuC2I CCSGG 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 116
BamHI GGATCC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 139, 142
BccI CCATC 5 cut(s) 16, 26, 58, 233, 328
BciT130I CCWGG 1 cut(s) 312
BcnI CCSGG 1 cut(s) 404
BisI GCNGC 2 cut(s) 128, 131
BlsI GCNGC 2 cut(s) 129, 132
Bme1390I CCNGG 2 cut(s) 312, 404
BmeT110I CYCGRG 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 299
BmrFI CCNGG 2 cut(s) 312, 404
BmsI GCATC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 311, 402
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 311, 402
BseGI GGATG 3 cut(s) 50, 241, 421
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 2 cut(s) 153, 173
BseNI ACTGG 1 cut(s) 375
BseXI GCAGC 2 cut(s) 139, 142
BseYI CCCAGC 1 cut(s) 489
BsgI GTGCAG 1 cut(s) 350
Bsh1285I CGRYCG 2 cut(s) 69, 408
BsiEI CGRYCG 2 cut(s) 69, 408
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 2 cut(s) 65, 404
BslI CCNNNNNNNGG 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 152, 172
BspLI GGNNCC 1 cut(s) 299
BspPI GGATC 2 cut(s) 292, 305
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 2 cut(s) 311, 402
BssMI GATC 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 247, 516
BstC8I GCNNGC 1 cut(s) 487
BstDEI CTNAG 2 cut(s) 139, 159
BstF5I GGATG 3 cut(s) 50, 241, 421
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 1 cut(s) 300
BstMBI GATC 1 cut(s) 297
BstMCI CGRYCG 2 cut(s) 69, 408
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 2 cut(s) 310, 443
BstSCI CCNGG 2 cut(s) 310, 402
BstV1I GCAGC 2 cut(s) 139, 142
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 4
BtsCI GGATG 3 cut(s) 50, 241, 421
BtsIMutI CAGTG 3 cut(s) 243, 333, 382
Cac8I GCNNGC 1 cut(s) 487
CfoI GCGC 1 cut(s) 503
Csp6I GTAC 1 cut(s) 163
CviAII CATG 4 cut(s) 288, 307, 440, 507
CviJI RGCY 3 cut(s) 34, 453, 489
CviKI_1 RGCY 3 cut(s) 34, 453, 489
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 139, 159
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 4 cut(s) 291, 310, 443, 510
FalI AAGNNNNNCTT 4 cut(s) 23, 55, 89, 121
FatI CATG 4 cut(s) 287, 306, 439, 506
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 128, 131
FokI GGATG 3 cut(s) 37, 248, 428
Fsp4HI GCNGC 2 cut(s) 128, 131
GlaI GCGC 1 cut(s) 502
GluI GCNGC 2 cut(s) 128, 131
GsaI CCCAGC 1 cut(s) 493
GsuI CTGGAG 1 cut(s) 410
HapII CCGG 2 cut(s) 65, 404
HhaI GCGC 1 cut(s) 503
Hin1II CATG 4 cut(s) 291, 310, 443, 510
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HinfI GANTC 3 cut(s) 100, 121, 179
HpaII CCGG 2 cut(s) 65, 404
Hpy166II GTNNAC 1 cut(s) 512
Hpy188I TCNGA 2 cut(s) 142, 264
Hpy188III TCNNGA 3 cut(s) 118, 191, 389
Hpy8I GTNNAC 1 cut(s) 512
HpyAV CCTTC 2 cut(s) 115, 310
HpyCH4III ACNGT 2 cut(s) 247, 516
HpyCH4V TGCA 3 cut(s) 331, 433, 439
HpyF3I CTNAG 2 cut(s) 139, 159
Hsp92II CATG 4 cut(s) 291, 310, 443, 510
HspAI GCGC 1 cut(s) 501
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 2 cut(s) 139, 142
LweI GCATC 1 cut(s) 488
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 2 cut(s) 31, 109
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 4 cut(s) 60, 210, 354, 421
MnlI CCTC 5 cut(s) 125, 148, 406, 443, 514
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 438
MspI CCGG 2 cut(s) 65, 404
MspR9I CCNGG 2 cut(s) 312, 404
MvaI CCWGG 1 cut(s) 312
NciI CCSGG 1 cut(s) 404
NdeII GATC 1 cut(s) 297
NlaIII CATG 4 cut(s) 291, 310, 443, 510
NlaIV GGNNCC 1 cut(s) 299
NspI RCATGY 2 cut(s) 310, 443
PaeR7I CTCGAG 1 cut(s) 116
PfeI GAWTC 3 cut(s) 100, 121, 179
PkrI GCNGC 2 cut(s) 129, 132
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 489
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 299
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 2 cut(s) 128, 131
Sau3AI GATC 1 cut(s) 297
ScrFI CCNGG 2 cut(s) 312, 404
SduI GDGCHC 1 cut(s) 156
SetI ASST 5 cut(s) 36, 153, 372, 491, 530
SfaNI GCATC 1 cut(s) 488
Sfr274I CTCGAG 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 82, 116
SmoI CTYRAG 2 cut(s) 82, 116
Sse9I AATT 4 cut(s) 60, 210, 354, 421
SsiI CCGC 1 cut(s) 183
SspI AATATT 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 310, 402
TaaI ACNGT 2 cut(s) 247, 516
TaqI TCGA 3 cut(s) 69, 117, 408
TasI AATT 4 cut(s) 60, 210, 354, 421
TfiI GAWTC 3 cut(s) 100, 121, 179
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 3 cut(s) 250, 333, 382
TseI GCWGC 2 cut(s) 127, 130
TspDTI ATGAA 2 cut(s) 15, 290
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 3 cut(s) 250, 333, 382
XceI RCATGY 2 cut(s) 310, 443
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XhoI CTCGAG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.