Rmu_ssc0000119.1_g000032

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000119.1
OG0000424
Physical Location & Seq
Reverse (-)
127927 .. 129876
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000119.1_g000032.1.cds

Sequence Viewer

Length: 1386 bp
atggaagaagggaaagccaagtctatatttctgacggcgcattctgatcacggctcatatagctcgctatatgaagtgaaaatccaaccaggcgggcaagtcataagcggtggagaatgtagtaactgccataagcggaggagttcaaggcgtcgtggggttctgctacttgagcctgtagagcaaggttacctgagcattcacactaggcaactgccaggttcttcagccgttccaaactatactttcccaaacaaaagtactcgaagtacttcaaaaccaccctatggatatgtctttgacacggagacaaagtcattggtcccattgaactcttcacctcaagctcataagccttatgcaactgttgtttccgcctatggaaagctttatcatcttgctaccaatccacattgctggccggagatcccaactccggcctttgagcgatatgatcctaccactaattgttgggagtctctccctccttgtccggctaggcctaagaagatactaggctatgccgtttgttatggctttattttgttctcacttggtggcgacgactacttcatggcttttgatgtcgctagaaaacaatggcatgaagtccaactgtggcagcctgcttctagtcatcatcggtttcagtgggagggccgtggttgtagaaaaaatagagctgatcttgatcttcaacaaaaacaccgtatcaccacgtttcaagttgtggatcctcaacaaaaacactcttggaatgcagccatccaagacccagaatgggccaagctgcatctccaactctccttcaagcgcaactcaatggatccgacctttttaattctaccatctaagcttgatgagtttttcaaaatgacgttgtttgaaaatgacagaaagccaagaattatgttaatcaagcagcagtcaaagcaggttgagaaaagaaatatgatcttgggttgcagcaacggtttgctttgcatttatggatctttggaaaatgaagactttggtttgtggagtccgacaatccacaagtttaagaggattcctttgtcagccttcaataagtggacgcagagcaagaccttttatggcttcgggtatgattcagtcaatgatgactataagtttgtgagaatggagcagtttaaggatcctagtggtgttgttacaagctcggaagtgcaggtttatagtctaaaattgtactcatggaaaagggtccaagacttgcctgctcatctcaataaagattatatatttgcatcaaatggggtttgtctggatagttctttacattggttgatgaggttaggtgacaaaggtggaggaccaatgatagttctaacctttgatctcgcaagtgaagagtaccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

461

Amino Acids

52.86

Weight (kDa)

9.01

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 925, 1183
AccB7I CCANNNNNTGG 1 cut(s) 287
AciI CCGC 4 cut(s) 93, 108, 136, 375
AclWI GGATC 9 cut(s) 421, 449, 728, 741, 821, 834, 1000, 1154, 1167
AcoI YGGCCR 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 151
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 4 cut(s) 262, 271, 1214, 1379
AfiI CCNNNNNNNGG 3 cut(s) 287, 436, 781
AgsI TTSAA 9 cut(s) 147, 276, 331, 698, 725, 811, 871, 887, 1069
AjnI CCWGG 2 cut(s) 88, 217
AluBI AGCT 7 cut(s) 63, 347, 388, 683, 790, 856, 1182
AluI AGCT 7 cut(s) 63, 347, 388, 683, 790, 856, 1182
Alw26I GTCTC 2 cut(s) 302, 483
AlwI GGATC 9 cut(s) 421, 449, 728, 741, 821, 834, 1000, 1154, 1167
AoxI GGCC 5 cut(s) 419, 438, 500, 658, 783
ApeKI GCWGC 5 cut(s) 622, 761, 790, 922, 966
ArsI GACNNNNNNTTYG 2 cut(s) 1118, 1150
Asp700I GAANNNNTTC 1 cut(s) 271
AspLEI GCGC 2 cut(s) 40, 816
AspS9I GGNCC 5 cut(s) 322, 658, 783, 1228, 1337
AsuHPI GGTGA 3 cut(s) 330, 706, 1334
AvaII GGWCC 3 cut(s) 322, 1228, 1337
BamHI GGATCC 3 cut(s) 733, 826, 1159
BbsI GAAGAC 1 cut(s) 1014
BbvI GCAGC 5 cut(s) 634, 773, 777, 934, 978
BccI CCATC 2 cut(s) 773, 856
BceAI ACGGC 5 cut(s) 51, 67, 215, 509, 645
BciT130I CCWGG 2 cut(s) 90, 219
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 302, 483
BfaI CTAG 7 cut(s) 207, 498, 515, 591, 633, 1164, 1384
BfmI CTRYAG 1 cut(s) 177
BfuAI ACCTGC 2 cut(s) 925, 1183
BisI GCNGC 5 cut(s) 623, 762, 791, 923, 967
BlsI GCNGC 5 cut(s) 624, 763, 792, 924, 968
BmcAI AGTACT 2 cut(s) 262, 271
Bme1390I CCNGG 2 cut(s) 90, 219
Bme18I GGWCC 3 cut(s) 322, 1228, 1337
BmgT120I GGNCC 5 cut(s) 322, 658, 783, 1228, 1337
BmiI GGNNCC 5 cut(s) 324, 735, 828, 1161, 1229
BmrFI CCNGG 2 cut(s) 90, 219
BmsI GCATC 2 cut(s) 802, 1280
BpiI GAAGAC 1 cut(s) 1014
Bpu10I CCTNAGC 1 cut(s) 194
BpuEI CTTGAG 2 cut(s) 191, 327
BsaBI GATNNNNATC 1 cut(s) 690
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 661
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 436, 781
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 2 cut(s) 90, 219
BseDI CCNNGG 1 cut(s) 661
BseGI GGATG 1 cut(s) 765
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 3 cut(s) 287, 436, 781
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 154
BseXI GCAGC 5 cut(s) 634, 773, 777, 934, 978
BsgI GTGCAG 1 cut(s) 1211
BshFI GGCC 5 cut(s) 421, 440, 502, 660, 785
BsiSI CCGG 3 cut(s) 422, 437, 494
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 3 cut(s) 287, 436, 781
BsmAI GTCTC 2 cut(s) 302, 483
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 3 cut(s) 40, 198, 763
BsnI GGCC 5 cut(s) 421, 440, 502, 660, 785
BspACI CCGC 4 cut(s) 93, 108, 136, 375
BspANI GGCC 5 cut(s) 421, 440, 502, 660, 785
BspCNI CTCAG 1 cut(s) 186
BspLI GGNNCC 5 cut(s) 324, 735, 828, 1161, 1229
BspMI ACCTGC 2 cut(s) 925, 1183
BspPI GGATC 9 cut(s) 421, 449, 728, 741, 821, 834, 1000, 1154, 1167
BsrDI GCAATG 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 661
BssNI GRCGYC 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 90, 219
Bst4CI ACNGT 4 cut(s) 367, 618, 710, 974
Bst6I CTCTTC 2 cut(s) 340, 1368
BstACI GRCGYC 1 cut(s) 151
BstC8I GCNNGC 5 cut(s) 65, 95, 419, 627, 1242
BstDEI CTNAG 3 cut(s) 194, 504, 852
BstDSI CCRYGG 1 cut(s) 661
BstEII GGTNACC 1 cut(s) 188
BstF5I GGATG 1 cut(s) 765
BstHHI GCGC 2 cut(s) 40, 816
BstMAI GTCTC 2 cut(s) 302, 483
BstMWI GCNNNNNNNGC 4 cut(s) 60, 172, 181, 931
BstNI CCWGG 2 cut(s) 90, 219
BstPI GGTNACC 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 88, 217
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 5 cut(s) 634, 773, 777, 934, 978
BstV2I GAAGAC 1 cut(s) 1014
BstX2I RGATCY 5 cut(s) 426, 733, 826, 992, 1159
BstXI CCANNNNNNTGG 1 cut(s) 417
BstYI RGATCY 5 cut(s) 426, 733, 826, 992, 1159
BsuRI GGCC 5 cut(s) 421, 440, 502, 660, 785
BtgI CCRYGG 1 cut(s) 661
BtsCI GGATG 1 cut(s) 765
BtsIMutI CAGTG 1 cut(s) 656
BveI ACCTGC 2 cut(s) 925, 1183
Cac8I GCNNGC 5 cut(s) 65, 95, 419, 627, 1242
CfoI GCGC 2 cut(s) 40, 816
Cfr13I GGNCC 5 cut(s) 322, 658, 783, 1228, 1337
CseI GACGC 2 cut(s) 140, 1087
Csp6I GTAC 4 cut(s) 261, 270, 1213, 1378
CviAII CATG 3 cut(s) 574, 605, 1218
CviQI GTAC 4 cut(s) 261, 270, 1213, 1378
DdeI CTNAG 3 cut(s) 194, 504, 852
DraIII CACNNNGTG 1 cut(s) 557
EaeI YGGCCR 1 cut(s) 419
Eam1104I CTCTTC 2 cut(s) 340, 1368
EarI CTCTTC 2 cut(s) 340, 1368
EciI GGCGGA 1 cut(s) 364
Eco147I AGGCCT 1 cut(s) 502
Eco47I GGWCC 3 cut(s) 322, 1228, 1337
Eco57I CTGAAG 1 cut(s) 210
Eco91I GGTNACC 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 88, 217
FaeI CATG 3 cut(s) 577, 608, 1221
FaqI GGGAC 1 cut(s) 308
FatI CATG 3 cut(s) 573, 604, 1217
FauI CCCGC 1 cut(s) 86
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 5 cut(s) 623, 762, 791, 923, 967
FokI GGATG 1 cut(s) 752
Fsp4HI GCNGC 5 cut(s) 623, 762, 791, 923, 967
FspBI CTAG 7 cut(s) 207, 498, 515, 591, 633, 1164, 1384
GlaI GCGC 2 cut(s) 39, 815
GluI GCNGC 5 cut(s) 623, 762, 791, 923, 967
HaeIII GGCC 5 cut(s) 421, 440, 502, 660, 785
HapII CCGG 3 cut(s) 422, 437, 494
HgaI GACGC 2 cut(s) 140, 1087
HhaI GCGC 2 cut(s) 40, 816
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 3 cut(s) 577, 608, 1221
Hin6I GCGC 2 cut(s) 38, 814
HinP1I GCGC 2 cut(s) 38, 814
HindIII AAGCTT 2 cut(s) 386, 854
HinfI GANTC 4 cut(s) 476, 1024, 1051, 1112
HpaII CCGG 3 cut(s) 422, 437, 494
HphI GGTGA 3 cut(s) 330, 706, 1334
Hpy166II GTNNAC 1 cut(s) 1077
Hpy188I TCNGA 5 cut(s) 33, 46, 831, 1029, 1186
Hpy188III TCNNGA 2 cut(s) 689, 1289
Hpy8I GTNNAC 1 cut(s) 1077
Hpy99I CGWCG 2 cut(s) 156, 566
HpyAV CCTTC 2 cut(s) 817, 1075
HpyCH4III ACNGT 4 cut(s) 367, 618, 710, 974
HpyCH4IV ACGT 2 cut(s) 719, 878
HpyCH4V TGCA 7 cut(s) 362, 761, 793, 966, 984, 1192, 1271
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 172, 181, 931
HpyF3I CTNAG 3 cut(s) 194, 504, 852
HpySE526I ACGT 2 cut(s) 719, 878
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 3 cut(s) 577, 608, 1221
HspAI GCGC 2 cut(s) 38, 814
Ksp22I TGATCA 1 cut(s) 46
LmnI GCTCC 1 cut(s) 1147
Lsp1109I GCAGC 5 cut(s) 634, 773, 777, 934, 978
LweI GCATC 2 cut(s) 802, 1280
MaeI CTAG 7 cut(s) 207, 498, 515, 591, 633, 1164, 1384
MaeII ACGT 2 cut(s) 719, 878
MaeIII GTNAC 4 cut(s) 122, 188, 1174, 1322
MboII GAAGA 7 cut(s) 17, 216, 327, 520, 686, 1019, 1385
MflI RGATCY 5 cut(s) 426, 733, 826, 992, 1159
MluCI AATT 4 cut(s) 466, 840, 906, 1208
MlyI GAGTC 2 cut(s) 485, 1033
MmeI TCCRAC 5 cut(s) 109, 637, 823, 854, 1052
MnlI CCTC 8 cut(s) 132, 351, 495, 649, 747, 1041, 1308, 1328
MroXI GAANNNNTTC 1 cut(s) 271
MseI TTAA 4 cut(s) 839, 914, 1044, 1155
MspI CCGG 3 cut(s) 422, 437, 494
MspR9I CCNGG 2 cut(s) 90, 219
Mva1269I GAATGC 3 cut(s) 40, 198, 763
MvaI CCWGG 2 cut(s) 90, 219
MwoI GCNNNNNNNGC 4 cut(s) 60, 172, 181, 931
NlaIII CATG 3 cut(s) 577, 608, 1221
NlaIV GGNNCC 5 cut(s) 324, 735, 828, 1161, 1229
NmuCI GTSAC 1 cut(s) 1322
PceI AGGCCT 1 cut(s) 502
PctI GAATGC 3 cut(s) 40, 198, 763
PdmI GAANNNNTTC 1 cut(s) 271
PfeI GAWTC 2 cut(s) 1051, 1112
PflFI GACNNNGTC 1 cut(s) 313
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 5 cut(s) 624, 763, 792, 924, 968
PleI GAGTC 2 cut(s) 484, 1032
PpsI GAGTC 2 cut(s) 484, 1032
Psp6I CCWGG 2 cut(s) 88, 217
PspEI GGTNACC 1 cut(s) 188
PspGI CCWGG 2 cut(s) 88, 217
PspN4I GGNNCC 5 cut(s) 324, 735, 828, 1161, 1229
PspPI GGNCC 5 cut(s) 322, 658, 783, 1228, 1337
PsuI RGATCY 5 cut(s) 426, 733, 826, 992, 1159
PsyI GACNNNGTC 1 cut(s) 313
RsaI GTAC 4 cut(s) 262, 271, 1214, 1379
RsaNI GTAC 4 cut(s) 261, 270, 1213, 1378
SaqAI TTAA 4 cut(s) 839, 914, 1044, 1155
SatI GCNGC 5 cut(s) 623, 762, 791, 923, 967
Sau96I GGNCC 5 cut(s) 322, 658, 783, 1228, 1337
ScaI AGTACT 2 cut(s) 262, 271
SchI GAGTC 2 cut(s) 485, 1033
ScrFI CCNGG 2 cut(s) 90, 219
SfaNI GCATC 2 cut(s) 802, 1280
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 3 cut(s) 322, 1228, 1337
SmlI CTYRAG 2 cut(s) 170, 342
SmoI CTYRAG 2 cut(s) 170, 342
Sse9I AATT 4 cut(s) 466, 840, 906, 1208
SseBI AGGCCT 1 cut(s) 502
SsiI CCGC 4 cut(s) 93, 108, 136, 375
SspMI CTAG 7 cut(s) 207, 498, 515, 591, 633, 1164, 1384
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 2 cut(s) 88, 217
TaaI ACNGT 4 cut(s) 367, 618, 710, 974
TaiI ACGT 2 cut(s) 722, 881
TaqI TCGA 1 cut(s) 265
TasI AATT 4 cut(s) 466, 840, 906, 1208
TatI WGTACW 3 cut(s) 260, 269, 1212
TfiI GAWTC 2 cut(s) 1051, 1112
Tru1I TTAA 4 cut(s) 839, 914, 1044, 1155
Tru9I TTAA 4 cut(s) 839, 914, 1044, 1155
TscAI CASTG 1 cut(s) 656
TseFI GTSAC 1 cut(s) 1322
TseI GCWGC 5 cut(s) 622, 761, 790, 922, 966
Tsp45I GTSAC 1 cut(s) 1322
TspDTI ATGAA 4 cut(s) 87, 562, 621, 1020
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 1 cut(s) 656
Tth111I GACNNNGTC 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 287
VpaK11BI GGWCC 3 cut(s) 322, 1228, 1337
XmnI GAANNNNTTC 1 cut(s) 271
XspI CTAG 7 cut(s) 207, 498, 515, 591, 633, 1164, 1384
ZrmI AGTACT 2 cut(s) 262, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.