FvH4_1g00342

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000196
Physical Location & Seq
Forward (+)
174295 .. 176199
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00342.t1

Sequence Viewer

Length: 817 bp
ATGTTGCAGACTGTAACTGGTTATGGAGTGGCTAAAGTCCTGGAATCTGGGGATCCAAAGTTTAAGCCAGGCGACTTGGTTTGGGGTCATACTGGCTGGGAAGAATATAGTGTCATCACTGCCACAGAGTCTCTGTTTAAAATTCACCACACTGATGTGCCTCTCTCTTACTATACTGGACTTCTCGGTATGCCTGGAATGACTGCTTATGCTGGGTTTTTTTGAGGTTTGCTCTCCTAAGAAAGGAGAGACTGTCTACATTTCAGCCGCATCTGGAGCAGTAGGTCAGCTTGTTGGCCAATTTGCAAAGTTGACAGGTTGCTATGTTGTTGGGAGTGCTGGAAGCAAGGAAAAGGTTGATCTGCTGAAGAACAAATTCGGATTTGATGAGGCTTTCAACTATAAAGACGAACCTGACCTGGATGCAGCTTTAAGAAGGTATTTTCCTGATGGTATTGACATTTACTTTGAGAATGTGGGGGGAAAGATGCTTGATGCAGTGCTACCAAACATGAGGCTGAAAGGGCGAATAGCAGTGTGTGGGATGATATCTCAGTACAACTTGGAGAAGCCTGAAGGCATACATAATTTGATGTCTTTGATTGTTAAGCAGGTCCGCATGGAAGGTTTCCTGGTGTTCAGTTACTATCATCTGTATGGAAAGTTTCTTGAAACAGTGTTGCCTGCCATAAAAGAAGGGAAGATTACATATGTGGAAGATGTAGTTGAGGGCCTTGAGAACGCTCCTGCAGCTCTAATTGGGCTCTTTGCTGGCCGCAACGTGGGAAAGCAGGTTGTTGTAGTTTCCAGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

272

Amino Acids

28.54

Weight (kDa)

8.42

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 4 - 43 4.3e-09 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 602, 782
AccI GTMKAC 1 cut(s) 256
AciI CCGC 3 cut(s) 268, 617, 776
AclWI GGATC 2 cut(s) 47, 60
AcoI YGGCCR 2 cut(s) 296, 773
AcsI RAATTY 2 cut(s) 141, 375
AcuI CTGAAG 2 cut(s) 387, 595
AfaI GTAC 1 cut(s) 558
AfiI CCNNNNNNNGG 2 cut(s) 243, 782
AgsI TTSAA 2 cut(s) 398, 672
AjnI CCWGG 6 cut(s) 39, 67, 193, 418, 631, 807
AleI CACNNNNGTG 1 cut(s) 155
AluBI AGCT 3 cut(s) 290, 429, 753
AluI AGCT 3 cut(s) 290, 429, 753
Alw26I GTCTC 2 cut(s) 135, 243
AlwI GGATC 2 cut(s) 47, 60
AoxI GGCC 3 cut(s) 296, 731, 773
ApeKI GCWGC 2 cut(s) 426, 750
ApoI RAATTY 2 cut(s) 141, 375
ArsI GACNNNNNNTTYG 2 cut(s) 450, 482
Asp700I GAANNNNTTC 1 cut(s) 375
AspS9I GGNCC 2 cut(s) 614, 731
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 614
BalI TGGCCA 1 cut(s) 298
BamHI GGATCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 766
BbvI GCAGC 2 cut(s) 438, 762
BccI CCATC 1 cut(s) 444
BciT130I CCWGG 6 cut(s) 41, 69, 195, 420, 633, 809
BcoDI GTCTC 2 cut(s) 135, 243
BfmI CTRYAG 1 cut(s) 748
BfuAI ACCTGC 2 cut(s) 602, 782
BisI GCNGC 4 cut(s) 268, 427, 751, 776
BlsI GCNGC 4 cut(s) 269, 428, 752, 777
Bme1390I CCNGG 6 cut(s) 41, 69, 195, 420, 633, 809
Bme18I GGWCC 1 cut(s) 614
BmgT120I GGNCC 2 cut(s) 614, 731
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 6 cut(s) 41, 69, 195, 420, 633, 809
BmsI GCATC 4 cut(s) 279, 413, 478, 485
BplI GAGNNNNNCTC 2 cut(s) 216, 248
BpmI CTGGAG 1 cut(s) 295
BpuEI CTTGAG 1 cut(s) 756
BsaJI CCNNGG 1 cut(s) 808
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 782
Bse1I ACTGG 3 cut(s) 22, 97, 181
BseBI CCWGG 6 cut(s) 41, 69, 195, 420, 633, 809
BseDI CCNNGG 1 cut(s) 808
BseGI GGATG 2 cut(s) 428, 550
BseLI CCNNNNNNNGG 2 cut(s) 243, 782
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 3 cut(s) 22, 97, 181
BseXI GCAGC 2 cut(s) 438, 762
BseYI CCCAGC 2 cut(s) 96, 212
BshFI GGCC 3 cut(s) 298, 733, 775
BslI CCNNNNNNNGG 2 cut(s) 243, 782
BsmAI GTCTC 2 cut(s) 135, 243
BsnI GGCC 3 cut(s) 298, 733, 775
Bsp1286I GDGCHC 1 cut(s) 766
Bsp143I GATC 2 cut(s) 52, 359
BspACI CCGC 3 cut(s) 268, 617, 776
BspANI GGCC 3 cut(s) 298, 733, 775
BspCNI CTCAG 1 cut(s) 566
BspLI GGNNCC 1 cut(s) 54
BspMAI CTGCAG 1 cut(s) 752
BspMI ACCTGC 2 cut(s) 602, 782
BspPI GGATC 2 cut(s) 47, 60
BsrI ACTGG 3 cut(s) 22, 97, 181
BssECI CCNNGG 1 cut(s) 808
BssMI GATC 2 cut(s) 52, 359
Bst2UI CCWGG 6 cut(s) 41, 69, 195, 420, 633, 809
Bst4CI ACNGT 3 cut(s) 13, 254, 677
BstC8I GCNNGC 2 cut(s) 685, 773
BstDEI CTNAG 2 cut(s) 238, 553
BstENI CCTNNNNNAGG 1 cut(s) 241
BstF5I GGATG 2 cut(s) 428, 550
BstKTI GATC 2 cut(s) 55, 362
BstMAI GTCTC 2 cut(s) 135, 243
BstMBI GATC 2 cut(s) 52, 359
BstMWI GCNNNNNNNGC 3 cut(s) 276, 524, 750
BstNI CCWGG 6 cut(s) 41, 69, 195, 420, 633, 809
BstSCI CCNGG 6 cut(s) 39, 67, 193, 418, 631, 807
BstSFI CTRYAG 1 cut(s) 748
BstV1I GCAGC 2 cut(s) 438, 762
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 3 cut(s) 298, 733, 775
BtsCI GGATG 2 cut(s) 428, 550
BtsI GCAGTG 3 cut(s) 117, 505, 541
BtsIMutI CAGTG 5 cut(s) 117, 150, 505, 541, 682
BveI ACCTGC 2 cut(s) 602, 782
Cac8I GCNNGC 2 cut(s) 685, 773
Cfr13I GGNCC 2 cut(s) 614, 731
Csp6I GTAC 1 cut(s) 557
CviAII CATG 2 cut(s) 512, 620
CviQI GTAC 1 cut(s) 557
DdeI CTNAG 2 cut(s) 238, 553
DpnI GATC 2 cut(s) 54, 361
DpnII GATC 2 cut(s) 52, 359
DraI TTTAAA 1 cut(s) 139
EaeI YGGCCR 2 cut(s) 296, 773
Eco24I GRGCYC 1 cut(s) 766
Eco32I GATATC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 614
Eco57I CTGAAG 2 cut(s) 387, 595
EcoNI CCTNNNNNAGG 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 731
EcoRII CCWGG 6 cut(s) 39, 67, 193, 418, 631, 807
EcoRV GATATC 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 766
FaeI CATG 2 cut(s) 515, 623
FatI CATG 2 cut(s) 511, 619
FauNDI CATATG 1 cut(s) 710
FblI GTMKAC 1 cut(s) 256
Fnu4HI GCNGC 4 cut(s) 268, 427, 751, 776
FokI GGATG 2 cut(s) 435, 557
FriOI GRGCYC 1 cut(s) 766
Fsp4HI GCNGC 4 cut(s) 268, 427, 751, 776
GluI GCNGC 4 cut(s) 268, 427, 751, 776
GsaI CCCAGC 2 cut(s) 100, 216
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 3 cut(s) 298, 733, 775
Hin1II CATG 2 cut(s) 515, 623
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 2 cut(s) 44, 128
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 257, 313
Hpy188I TCNGA 1 cut(s) 381
Hpy188III TCNNGA 3 cut(s) 274, 447, 669
Hpy8I GTNNAC 2 cut(s) 257, 313
HpyAV CCTTC 4 cut(s) 430, 570, 618, 690
HpyCH4III ACNGT 3 cut(s) 13, 254, 677
HpyCH4IV ACGT 1 cut(s) 781
HpyCH4V TGCA 5 cut(s) 7, 306, 426, 498, 750
HpyF10VI GCNNNNNNNGC 3 cut(s) 276, 524, 750
HpyF3I CTNAG 2 cut(s) 238, 553
HpySE526I ACGT 1 cut(s) 781
Hsp92II CATG 2 cut(s) 515, 623
Kzo9I GATC 2 cut(s) 52, 359
LmnI GCTCC 2 cut(s) 276, 749
Lsp1109I GCAGC 2 cut(s) 438, 762
LweI GCATC 4 cut(s) 279, 413, 478, 485
MaeII ACGT 1 cut(s) 781
MaeIII GTNAC 2 cut(s) 13, 642
MalI GATC 2 cut(s) 54, 361
MboI GATC 2 cut(s) 52, 359
MboII GAAGA 4 cut(s) 113, 380, 713, 729
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 766
MlsI TGGCCA 1 cut(s) 298
MluCI AATT 5 cut(s) 141, 300, 375, 587, 757
MluNI TGGCCA 1 cut(s) 298
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 5 cut(s) 171, 218, 383, 508, 722
Mox20I TGGCCA 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 375
MscI TGGCCA 1 cut(s) 298
MseI TTAA 4 cut(s) 63, 138, 432, 607
MslI CAYNNNNRTG 3 cut(s) 153, 155, 655
Msp20I TGGCCA 1 cut(s) 298
MspR9I CCNGG 6 cut(s) 41, 69, 195, 420, 633, 809
MvaI CCWGG 6 cut(s) 41, 69, 195, 420, 633, 809
MwoI GCNNNNNNNGC 3 cut(s) 276, 524, 750
NdeI CATATG 1 cut(s) 710
NdeII GATC 2 cut(s) 52, 359
NlaIII CATG 2 cut(s) 515, 623
NlaIV GGNNCC 1 cut(s) 54
OliI CACNNNNGTG 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 1 cut(s) 44
PfoI TCCNGGA 1 cut(s) 39
PkrI GCNGC 4 cut(s) 269, 428, 752, 777
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 6 cut(s) 39, 67, 193, 418, 631, 807
PspFI CCCAGC 2 cut(s) 96, 212
PspGI CCWGG 6 cut(s) 39, 67, 193, 418, 631, 807
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 2 cut(s) 614, 731
PstI CTGCAG 1 cut(s) 752
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 1 cut(s) 558
RsaNI GTAC 1 cut(s) 557
RseI CAYNNNNRTG 3 cut(s) 153, 155, 655
SaqAI TTAA 4 cut(s) 63, 138, 432, 607
SatI GCNGC 4 cut(s) 268, 427, 751, 776
Sau3AI GATC 2 cut(s) 52, 359
Sau96I GGNCC 2 cut(s) 614, 731
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 6 cut(s) 41, 69, 195, 420, 633, 809
SduI GDGCHC 1 cut(s) 766
SfaNI GCATC 4 cut(s) 279, 413, 478, 485
SfcI CTRYAG 1 cut(s) 748
SinI GGWCC 1 cut(s) 614
SmiMI CAYNNNNRTG 3 cut(s) 153, 155, 655
SmlI CTYRAG 1 cut(s) 735
SmoI CTYRAG 1 cut(s) 735
Sse9I AATT 5 cut(s) 141, 300, 375, 587, 757
SsiI CCGC 3 cut(s) 268, 617, 776
StyD4I CCNGG 6 cut(s) 39, 67, 193, 418, 631, 807
TaaI ACNGT 3 cut(s) 13, 254, 677
TaiI ACGT 1 cut(s) 784
TasI AATT 5 cut(s) 141, 300, 375, 587, 757
TatI WGTACW 1 cut(s) 556
TauI GCSGC 2 cut(s) 270, 778
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 4 cut(s) 63, 138, 432, 607
Tru9I TTAA 4 cut(s) 63, 138, 432, 607
TscAI CASTG 5 cut(s) 124, 157, 505, 541, 682
TseI GCWGC 2 cut(s) 426, 750
TspRI CASTG 5 cut(s) 124, 157, 505, 541, 682
VpaK11BI GGWCC 1 cut(s) 614
XagI CCTNNNNNAGG 1 cut(s) 241
XapI RAATTY 2 cut(s) 141, 375
XmiI GTMKAC 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.