Rmu_sc0012119.1_g000001

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012119.1
OG0000196
Physical Location & Seq
Reverse (-)
402 .. 1222
821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012119.1_g000001.1.cds

Sequence Viewer

Length: 540 bp
atggagggagtgagtaacaagcaggtgttattgaaggagcatcttacgagtgggaatcctaccgaaggcgttcaaaacttgatgtacatgattgggaatcgggtgcgcatggagggattcatagtcgctgatcactttcacctctatccaaagtatcttgaattggtgataccttacatcaaagaaggcaaaatagtgtctgtggaagacgtggctgacggcattgacaatgctcccgctgctctcgtaggcctcttcgccggacgcaacgttggaaagcaacttgttttagtttcccgcgattatgatcatcatgaccaaaagaatggaactatgaggaacaagcaggtggcgttgagggaccaaatgtgccagagtctcctactctatgaatcaaggctcgagtctgccccagcagctctgttttgcatcttcaaaggctgcaaggctgggaaacaagtgggtgcagtttctcctgaattcctgattgactgctgtgctatacatacaggcaaactggaaaaactagaaatcatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

179

Amino Acids

19.85

Weight (kDa)

6.59

Isoelectric Point (pI)

27.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 13, 337
Acc16I TGCGCA 1 cut(s) 107
Acc36I ACCTGC 2 cut(s) 13, 337
AccII CGCG 1 cut(s) 300
AciI CCGC 2 cut(s) 237, 298
AclI AACGTT 1 cut(s) 270
AcsI RAATTY 1 cut(s) 479
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 4 cut(s) 34, 74, 161, 436
AjiI CACGTC 1 cut(s) 211
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 3 cut(s) 239, 416, 441
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 131, 178
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 3 cut(s) 226, 428, 428
BceAI ACGGC 1 cut(s) 235
BclI TGATCA 2 cut(s) 130, 307
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 2 cut(s) 527, 538
BfuAI ACCTGC 2 cut(s) 13, 337
BisI GCNGC 3 cut(s) 240, 417, 442
BlsI GCNGC 3 cut(s) 241, 418, 443
Bme18I GGWCC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 401
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 362
BmsI GCATC 2 cut(s) 49, 438
BpiI GAAGAC 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 306
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 306
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 522
BseXI GCAGC 3 cut(s) 226, 428, 428
BseYI CCCAGC 2 cut(s) 412, 449
BsgI GTGCAG 1 cut(s) 486
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 374
BsnI GGCC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 401
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 2 cut(s) 130, 307
BspACI CCGC 2 cut(s) 237, 298
BspANI GGCC 1 cut(s) 252
BspFNI CGCG 1 cut(s) 300
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 362
BspMI ACCTGC 2 cut(s) 13, 337
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 1 cut(s) 522
BssMI GATC 2 cut(s) 130, 307
Bst6I CTCTTC 1 cut(s) 260
BstAUI TGTACA 1 cut(s) 84
BstENI CCTNNNNNAGG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 2 cut(s) 133, 310
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 2 cut(s) 130, 307
BstMWI GCNNNNNNNGC 2 cut(s) 239, 416
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 3 cut(s) 226, 428, 428
BstV2I GAAGAC 1 cut(s) 213
BstXI CCANNNNNNTGG 1 cut(s) 326
BsuRI GGCC 1 cut(s) 252
BtrI CACGTC 1 cut(s) 211
BveI ACCTGC 2 cut(s) 13, 337
CciI TCATGA 1 cut(s) 313
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 85
CviAII CATG 3 cut(s) 88, 109, 314
CviJI RGCY 6 cut(s) 215, 252, 400, 419, 441, 449
CviKI_1 RGCY 6 cut(s) 215, 252, 400, 419, 441, 449
CviQI GTAC 1 cut(s) 85
DpnI GATC 2 cut(s) 132, 309
DpnII GATC 2 cut(s) 130, 307
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 401
EcoNI CCTNNNNNAGG 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 479
FaeI CATG 3 cut(s) 91, 112, 317
FaiI YATR 9 cut(s) 89, 110, 122, 306, 315, 335, 390, 503, 507
FaqI GGGAC 1 cut(s) 374
FatI CATG 3 cut(s) 87, 108, 313
FauI CCCGC 2 cut(s) 244, 305
FbaI TGATCA 2 cut(s) 130, 307
Fnu4HI GCNGC 3 cut(s) 240, 417, 442
Fsp4HI GCNGC 3 cut(s) 240, 417, 442
FspAI RTGCGCAY 1 cut(s) 107
FspBI CTAG 2 cut(s) 527, 538
FspI TGCGCA 1 cut(s) 107
GlaI GCGC 1 cut(s) 107
GluI GCNGC 3 cut(s) 240, 417, 442
GsaI CCCAGC 2 cut(s) 416, 453
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 261
HgaI GACGC 1 cut(s) 273
HhaI GCGC 1 cut(s) 108
Hin1II CATG 3 cut(s) 91, 112, 317
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 6 cut(s) 55, 97, 117, 376, 392, 404
HpaII CCGG 1 cut(s) 261
HphI GGTGA 2 cut(s) 131, 178
Hpy188III TCNNGA 4 cut(s) 158, 314, 476, 484
HpyAV CCTTC 3 cut(s) 28, 59, 179
HpyCH4IV ACGT 2 cut(s) 210, 270
HpyCH4V TGCA 3 cut(s) 429, 444, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 416
HpySE526I ACGT 2 cut(s) 210, 270
Hsp92II CATG 3 cut(s) 91, 112, 317
HspAI GCGC 1 cut(s) 106
Ksp22I TGATCA 2 cut(s) 130, 307
Kzo9I GATC 2 cut(s) 130, 307
LmnI GCTCC 2 cut(s) 37, 238
Lsp1109I GCAGC 3 cut(s) 226, 428, 428
LweI GCATC 2 cut(s) 49, 438
MaeI CTAG 2 cut(s) 527, 538
MaeII ACGT 2 cut(s) 210, 270
MaeIII GTNAC 1 cut(s) 14
MalI GATC 2 cut(s) 132, 309
MboI GATC 2 cut(s) 130, 307
MboII GAAGA 3 cut(s) 218, 247, 424
MluCI AATT 2 cut(s) 161, 479
MlyI GAGTC 2 cut(s) 385, 413
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 5 cut(s) 106, 152, 263, 330, 351
MroXI GAANNNNTTC 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 239, 416
NdeII GATC 2 cut(s) 130, 307
NlaIII CATG 3 cut(s) 91, 112, 317
NlaIV GGNNCC 1 cut(s) 362
NsbI TGCGCA 1 cut(s) 107
PaeR7I CTCGAG 1 cut(s) 401
PagI TCATGA 1 cut(s) 313
PaqCI CACCTGC 2 cut(s) 13, 337
PceI AGGCCT 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 4 cut(s) 55, 97, 117, 392
PkrI GCNGC 3 cut(s) 241, 418, 443
PleI GAGTC 2 cut(s) 384, 412
PpsI GAGTC 2 cut(s) 384, 412
Psp1406I AACGTT 1 cut(s) 270
PspFI CCCAGC 2 cut(s) 412, 449
PspN4I GGNNCC 1 cut(s) 362
PspPI GGNCC 1 cut(s) 361
PspXI VCTCGAGB 1 cut(s) 401
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SatI GCNGC 3 cut(s) 240, 417, 442
Sau3AI GATC 2 cut(s) 130, 307
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 2 cut(s) 385, 413
SetI ASST 7 cut(s) 27, 144, 175, 213, 273, 351, 421
SfaNI GCATC 2 cut(s) 49, 438
Sfr274I CTCGAG 1 cut(s) 401
SinI GGWCC 1 cut(s) 361
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 2 cut(s) 161, 479
SseBI AGGCCT 1 cut(s) 252
SsiI CCGC 2 cut(s) 237, 298
SspMI CTAG 2 cut(s) 527, 538
StuI AGGCCT 1 cut(s) 252
TaiI ACGT 2 cut(s) 213, 273
TaqI TCGA 1 cut(s) 402
TasI AATT 2 cut(s) 161, 479
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 4 cut(s) 55, 97, 117, 392
TseI GCWGC 3 cut(s) 239, 416, 441
TspDTI ATGAA 2 cut(s) 109, 405
VpaK11BI GGWCC 1 cut(s) 361
XagI CCTNNNNNAGG 1 cut(s) 63
XapI RAATTY 1 cut(s) 479
XhoI CTCGAG 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 2 cut(s) 527, 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.