Rh2BG004500

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000196
Physical Location & Seq
Forward (+)
370570 .. 372056
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG004500.1

Sequence Viewer

Length: 333 bp
ATGGCTAGTGGAGAAGAAGTAAGGAACAAGCAGGTGATATTCGGAGACTATATCACCGGCTTCCCCAAAGAATCCGACCTCAAATTGACCACTGCCACTACCAAACTCAAGCTTCCAGAAGGTTCGACTGGCCTCCTCGTCAAGAACCTCTTCTTGTCCTGCGATCCTTACATGCGAAGCCGTATGACCAAGCACGACAGGCCCACTTACGTCCAATCCTTCACGCCCGGCTCGGATGACCGGCCAATGCTCTTTTACCTACATTACTACATAAAGAAGAGTGTTGATATCAATTTAATTAGTCTTATTCTGGTACCTGCTGCACTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

110

Amino Acids

12.46

Weight (kDa)

9.04

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 10 - 78 2.7e-10 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
Acc36I ACCTGC 2 cut(s) 22, 325
Acc65I GGTACC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 313
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 242
AfaI GTAC 1 cut(s) 315
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 1 cut(s) 158
AoxI GGCC 3 cut(s) 130, 200, 242
ApeKI GCWGC 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 149
Asp718I GGTACC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 46, 46
BanI GGYRCC 1 cut(s) 313
BbvI GCAGC 1 cut(s) 307
BceAI ACGGC 1 cut(s) 165
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 6
BfuAI ACCTGC 2 cut(s) 22, 325
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 228
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse118I RCCGGY 2 cut(s) 56, 240
Bse1I ACTGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 306
BshFI GGCC 3 cut(s) 132, 202, 244
BshNI GGYRCC 1 cut(s) 313
BsiSI CCGG 3 cut(s) 57, 228, 241
BsmAI GTCTC 1 cut(s) 39
BsnI GGCC 3 cut(s) 132, 202, 244
Bsp143I GATC 1 cut(s) 163
BspANI GGCC 3 cut(s) 132, 202, 244
BspLI GGNNCC 1 cut(s) 315
BspMI ACCTGC 2 cut(s) 22, 325
BspPI GGATC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 313
BsrFI RCCGGY 2 cut(s) 56, 240
BsrI ACTGG 1 cut(s) 133
BssAI RCCGGY 2 cut(s) 56, 240
BssMI GATC 1 cut(s) 163
Bst6I CTCTTC 2 cut(s) 155, 272
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 307
BsuRI GGCC 3 cut(s) 132, 202, 244
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
BveI ACCTGC 2 cut(s) 22, 325
Cfr10I RCCGGY 2 cut(s) 56, 240
Cfr13I GGNCC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 314
CviAII CATG 1 cut(s) 172
CviJI RGCY 8 cut(s) 5, 60, 112, 132, 180, 202, 231, 244
CviKI_1 RGCY 8 cut(s) 5, 60, 112, 132, 180, 202, 231, 244
CviQI GTAC 1 cut(s) 314
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 242
Eam1104I CTCTTC 2 cut(s) 155, 272
EarI CTCTTC 2 cut(s) 155, 272
Eco32I GATATC 1 cut(s) 289
EcoRV GATATC 1 cut(s) 289
FaeI CATG 1 cut(s) 175
FaiI YATR 4 cut(s) 51, 173, 185, 272
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 321
HaeIII GGCC 3 cut(s) 132, 202, 244
HapII CCGG 3 cut(s) 57, 228, 241
Hin1II CATG 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 71
HpaII CCGG 3 cut(s) 57, 228, 241
HphI GGTGA 2 cut(s) 46, 46
Hpy188I TCNGA 3 cut(s) 44, 76, 235
Hpy188III TCNNGA 2 cut(s) 116, 142
HpyAV CCTTC 2 cut(s) 113, 229
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 1 cut(s) 175
KpnI GGTACC 1 cut(s) 317
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 9 cut(s) 17, 70, 114, 129, 172, 184, 241, 254, 296
Lsp1109I GCAGC 1 cut(s) 307
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 210
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 26, 142, 289
MluCI AATT 4 cut(s) 83, 292, 297, 328
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 4 cut(s) 89, 143, 146, 158
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 2 cut(s) 296, 331
MspI CCGG 3 cut(s) 57, 228, 241
MspR9I CCNGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 199
NciI CCSGG 1 cut(s) 228
NdeII GATC 1 cut(s) 163
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 315
NspI RCATGY 1 cut(s) 175
PaqCI CACCTGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 201
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 296, 331
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 228
SetI ASST 8 cut(s) 36, 81, 114, 124, 150, 213, 261, 319
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 4 cut(s) 83, 292, 297, 328
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 226
TaiI ACGT 1 cut(s) 213
TaqI TCGA 1 cut(s) 125
TasI AATT 4 cut(s) 83, 292, 297, 328
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 296, 331
Tru9I TTAA 2 cut(s) 296, 331
TscAI CASTG 1 cut(s) 97
TseI GCWGC 1 cut(s) 320
TspRI CASTG 1 cut(s) 97
XceI RCATGY 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.