RchiOBHm_Chr1g0325341

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000196
Physical Location & Seq
Reverse (-)
13294011 .. 13295412
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55507

Sequence Viewer

Length: 543 bp
ATGCCTGGAATTACTGCTTATGCTGGTCTTTATGAGCTTTGCTTGCCTAAGAAAGGAGAGACGGTCTATGTTTCAGCAGCATCTGGAGCAGTAGGTCAACTAGTTGGCCAGTTTGCCAAACTCATGGGTTGCTATGTTGCCAGAAGTGCTGGAAGTAAAGAAAAGGTTGATTTGCTGAAGAACAAGTTTGGGTTTGACGAGGCTTTCAATTATAAAGAAGAATCTAACTTGGATGCAGCTTTGAAAAGGTATCGATATATATATATATATACTTACTTTGAGAATGTTGGGGGAAAGATGCTTGATGCGGTGCTACTAAACATGAGATTCCGTGGCCGAGTTGCAGTTTGCGGGATGATCTCACAGTACAACCTTGAGAAGCCTGAAGGTGTACATAACTTAATGTCTCTGATCTCCAAAGAGGTCCGGATGCAAGGTTTTGTTGCTTTTAATTACTATCATCTGTGTGGCAAGTTTCTTGAAATGGTCCTGCCTTACGTAAAAGAAGGGAAGGTTATGTACGTGGAACTGTGGAAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

180

Amino Acids

20.44

Weight (kDa)

9.02

Isoelectric Point (pI)

26.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 30 - 151 4e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AccIII TCCGGA 1 cut(s) 426
AciI CCGC 2 cut(s) 308, 351
AcoI YGGCCR 2 cut(s) 106, 334
AcuI CTGAAG 2 cut(s) 197, 405
AfaI GTAC 3 cut(s) 368, 393, 521
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 3 cut(s) 208, 244, 482
AhlI ACTAGT 1 cut(s) 100
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 2 cut(s) 37, 239
AluI AGCT 2 cut(s) 37, 239
Alw26I GTCTC 2 cut(s) 53, 411
AlwNI CAGNNNCTG 1 cut(s) 83
Aor13HI TCCGGA 1 cut(s) 426
AoxI GGCC 2 cut(s) 106, 334
ApeKI GCWGC 2 cut(s) 77, 236
AspS9I GGNCC 2 cut(s) 424, 487
AvaII GGWCC 2 cut(s) 424, 487
BalI TGGCCA 1 cut(s) 108
BarI GAAGNNNNNNTAC 2 cut(s) 503, 535
BbvI GCAGC 2 cut(s) 89, 248
BciT130I CCWGG 1 cut(s) 6
BcoDI GTCTC 2 cut(s) 53, 411
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 1 cut(s) 101
BisI GCNGC 2 cut(s) 78, 237
BlsI GCNGC 2 cut(s) 79, 238
Bme1390I CCNGG 1 cut(s) 6
Bme18I GGWCC 2 cut(s) 424, 487
BmgT120I GGNCC 2 cut(s) 424, 487
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 5 cut(s) 89, 223, 288, 295, 420
BpmI CTGGAG 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 395
Bsa29I ATCGAT 1 cut(s) 253
BsaAI YACGTR 2 cut(s) 499, 523
BsaJI CCNNGG 1 cut(s) 331
BsaWI WCCGGW 1 cut(s) 426
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 109
BseAI TCCGGA 1 cut(s) 426
BseBI CCWGG 1 cut(s) 6
BseCI ATCGAT 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 3 cut(s) 238, 360, 435
BseLI CCNNNNNNNGG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 89, 248
BshFI GGCC 2 cut(s) 108, 336
BshVI ATCGAT 1 cut(s) 253
BsiSI CCGG 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 53, 411
BsmBI CGTCTC 1 cut(s) 53
BsnI GGCC 2 cut(s) 108, 336
Bsp13I TCCGGA 1 cut(s) 426
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 2 cut(s) 357, 411
BspACI CCGC 2 cut(s) 308, 351
BspANI GGCC 2 cut(s) 108, 336
BspDI ATCGAT 1 cut(s) 253
BspEI TCCGGA 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 391
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 2 cut(s) 357, 411
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 3 cut(s) 64, 366, 531
BstAUI TGTACA 1 cut(s) 391
BstBAI YACGTR 2 cut(s) 499, 523
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 331
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 238, 360, 435
BstKTI GATC 2 cut(s) 360, 414
BstMAI GTCTC 2 cut(s) 53, 411
BstMBI GATC 2 cut(s) 357, 411
BstMWI GCNNNNNNNGC 3 cut(s) 43, 86, 146
BstNI CCWGG 1 cut(s) 6
BstSCI CCNGG 1 cut(s) 4
BstSNI TACGTA 1 cut(s) 499
BstV1I GCAGC 2 cut(s) 89, 248
BstXI CCANNNNNNTGG 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 253
BsuRI GGCC 2 cut(s) 108, 336
BsuTUI ATCGAT 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 331
BtsCI GGATG 3 cut(s) 238, 360, 435
Cac8I GCNNGC 1 cut(s) 44
CaiI CAGNNNCTG 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 424, 487
ClaI ATCGAT 1 cut(s) 253
Csp6I GTAC 3 cut(s) 367, 392, 520
CviAII CATG 2 cut(s) 124, 322
CviJI RGCY 6 cut(s) 37, 108, 203, 239, 336, 382
CviKI_1 RGCY 6 cut(s) 37, 108, 203, 239, 336, 382
CviQI GTAC 3 cut(s) 367, 392, 520
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 359, 413
DpnII GATC 2 cut(s) 357, 411
EaeI YGGCCR 2 cut(s) 106, 334
Eco105I TACGTA 1 cut(s) 499
Eco47I GGWCC 2 cut(s) 424, 487
Eco57I CTGAAG 2 cut(s) 197, 405
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 4
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 2 cut(s) 127, 325
FatI CATG 2 cut(s) 123, 321
FauI CCCGC 1 cut(s) 344
Fnu4HI GCNGC 2 cut(s) 78, 237
FokI GGATG 3 cut(s) 245, 367, 442
Fsp4HI GCNGC 2 cut(s) 78, 237
FspBI CTAG 1 cut(s) 101
GluI GCNGC 2 cut(s) 78, 237
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 2 cut(s) 108, 336
HapII CCGG 1 cut(s) 427
Hin1II CATG 2 cut(s) 127, 325
HincII GTYRAC 1 cut(s) 98
HindII GTYRAC 1 cut(s) 98
HinfI GANTC 2 cut(s) 221, 327
HpaII CCGG 1 cut(s) 427
Hpy166II GTNNAC 2 cut(s) 98, 392
Hpy188I TCNGA 1 cut(s) 411
Hpy188III TCNNGA 3 cut(s) 84, 427, 479
Hpy8I GTNNAC 2 cut(s) 98, 392
HpyAV CCTTC 3 cut(s) 380, 500, 505
HpyCH4III ACNGT 3 cut(s) 64, 366, 531
HpyCH4IV ACGT 2 cut(s) 498, 522
HpyCH4V TGCA 3 cut(s) 236, 344, 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 86, 146
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 2 cut(s) 498, 522
Hsp92II CATG 2 cut(s) 127, 325
Kpn2I TCCGGA 1 cut(s) 426
Kzo9I GATC 2 cut(s) 357, 411
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 9 cut(s) 9, 18, 69, 122, 135, 154, 396, 440, 503
Lsp1109I GCAGC 2 cut(s) 89, 248
LweI GCATC 5 cut(s) 89, 223, 288, 295, 420
MaeI CTAG 1 cut(s) 101
MaeII ACGT 2 cut(s) 498, 522
MalI GATC 2 cut(s) 359, 413
MboI GATC 2 cut(s) 357, 411
MboII GAAGA 2 cut(s) 190, 230
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 3 cut(s) 9, 208, 451
MluNI TGGCCA 1 cut(s) 108
MnlI CCTC 2 cut(s) 193, 415
Mox20I TGGCCA 1 cut(s) 108
MroI TCCGGA 1 cut(s) 426
MscI TGGCCA 1 cut(s) 108
MseI TTAA 2 cut(s) 401, 450
MslI CAYNNNNRTG 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 108
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 6
MwoI GCNNNNNNNGC 3 cut(s) 43, 86, 146
NdeII GATC 2 cut(s) 357, 411
NlaIII CATG 2 cut(s) 127, 325
NmeAIII GCCGAG 1 cut(s) 362
PfeI GAWTC 2 cut(s) 221, 327
PkrI GCNGC 2 cut(s) 79, 238
Ppu21I YACGTR 2 cut(s) 499, 523
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
PspPI GGNCC 2 cut(s) 424, 487
PstNI CAGNNNCTG 1 cut(s) 83
RsaI GTAC 3 cut(s) 368, 393, 521
RsaNI GTAC 3 cut(s) 367, 392, 520
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 2 cut(s) 401, 450
SatI GCNGC 2 cut(s) 78, 237
Sau3AI GATC 2 cut(s) 357, 411
Sau96I GGNCC 2 cut(s) 424, 487
ScrFI CCNGG 1 cut(s) 6
SfaNI GCATC 5 cut(s) 89, 223, 288, 295, 420
SinI GGWCC 2 cut(s) 424, 487
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
SnaBI TACGTA 1 cut(s) 499
SpeI ACTAGT 1 cut(s) 100
Sse9I AATT 3 cut(s) 9, 208, 451
SsiI CCGC 2 cut(s) 308, 351
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 3 cut(s) 64, 366, 531
TaiI ACGT 2 cut(s) 501, 525
TaqI TCGA 1 cut(s) 253
TasI AATT 3 cut(s) 9, 208, 451
TatI WGTACW 2 cut(s) 366, 391
TfiI GAWTC 2 cut(s) 221, 327
Tru1I TTAA 2 cut(s) 401, 450
Tru9I TTAA 2 cut(s) 401, 450
TseI GCWGC 2 cut(s) 77, 236
TspGWI ACGGA 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 424, 487
XagI CCTNNNNNAGG 1 cut(s) 51
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.