Rh1BG176600

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000196
Physical Location & Seq
Reverse (-)
28195211 .. 28196790
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG176600.1

Sequence Viewer

Length: 393 bp
ATGGCCTTTGAGAAGAAGTCCAAATCGAGGTCACCGAATACCAAAGGAGGGGACCCTATCAGCGGTTTTGGAGTGGCTAAAGTTTTGGAATCTGGGGATGCAAAGTTTAAGCAAGGCGACTTGGTTTGGGGAATGACTGGCTGGGAAGCGTATAGTTTCATCACTTCCATTCAGTATTTGTTTAAGATTCCCGGCACCGATGTGCCCCTATCTTATTATACTGGAATTCTTGTATACTTTGAGAATCCAGCTACTAAGAGCCAAAAGCCAGCCACAAATATGGTCGATCACCACAAGCTAGAATTACTGCAAAGGCGTAGAACATCTCTCATCTCAACCCCACATGAATTCCAAAAAATTCTGAAGGAACCCCTTTTAATTAATGAATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

130

Amino Acids

14.62

Weight (kDa)

9.3

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 5 - 55 9.8e-11 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccI GTMKAC 1 cut(s) 234
AciI CCGC 1 cut(s) 63
AcsI RAATTY 3 cut(s) 225, 347, 357
AcuI CTGAAG 1 cut(s) 383
AfiI CCNNNNNNNGG 3 cut(s) 27, 48, 62
AleI CACNNNNGTG 1 cut(s) 200
AluBI AGCT 2 cut(s) 251, 298
AluI AGCT 2 cut(s) 251, 298
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 3 cut(s) 225, 347, 357
AseI ATTAAT 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 24, 281
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 207
BanI GGYRCC 1 cut(s) 194
BcnI CCSGG 1 cut(s) 192
BfaI CTAG 1 cut(s) 299
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 4 cut(s) 53, 54, 196, 369
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 48, 62
Bse1I ACTGG 2 cut(s) 142, 226
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 3 cut(s) 27, 48, 62
BseNI ACTGG 2 cut(s) 142, 226
BseSI GKGCMC 1 cut(s) 207
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 194
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 27, 48, 62
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 286
BspACI CCGC 1 cut(s) 63
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 4 cut(s) 53, 54, 196, 369
BspT107I GGYRCC 1 cut(s) 194
BsrI ACTGG 2 cut(s) 142, 226
BssMI GATC 1 cut(s) 286
BssNAI GTATAC 1 cut(s) 235
Bst1107I GTATAC 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 255
BstEII GGTNACC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstPI GGTNACC 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 280
BstZ17I GTATAC 1 cut(s) 235
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 1 cut(s) 344
CviJI RGCY 8 cut(s) 5, 77, 141, 251, 261, 268, 272, 298
CviKI_1 RGCY 8 cut(s) 5, 77, 141, 251, 261, 268, 272, 298
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 383
Eco91I GGTNACC 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 52
EcoO65I GGTNACC 1 cut(s) 30
EcoRI GAATTC 2 cut(s) 225, 347
FaeI CATG 1 cut(s) 347
FaiI YATR 5 cut(s) 153, 219, 235, 281, 345
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 343
FblI GTMKAC 1 cut(s) 234
FokI GGATG 1 cut(s) 110
FspBI CTAG 1 cut(s) 299
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 192
Hin1II CATG 1 cut(s) 347
HinfI GANTC 4 cut(s) 89, 187, 244, 386
HpaII CCGG 1 cut(s) 192
HphI GGTGA 2 cut(s) 24, 281
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 1 cut(s) 390
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 358
HpyCH4V TGCA 2 cut(s) 101, 310
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 1 cut(s) 347
KflI GGGWCCC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 286
LpnPI CCDG 7 cut(s) 78, 123, 127, 205, 207, 261, 282
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 30
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 5 cut(s) 225, 302, 347, 357, 378
MnlI CCTC 2 cut(s) 21, 41
MseI TTAA 4 cut(s) 108, 183, 377, 381
MslI CAYNNNNRTG 2 cut(s) 200, 278
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 192
NciI CCSGG 1 cut(s) 192
NdeII GATC 1 cut(s) 286
NlaIII CATG 1 cut(s) 347
NlaIV GGNNCC 4 cut(s) 53, 54, 196, 369
NmuCI GTSAC 1 cut(s) 30
OliI CACNNNNGTG 1 cut(s) 200
PacI TTAATTAA 1 cut(s) 381
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 4 cut(s) 89, 187, 244, 386
PpuMI RGGWCCY 1 cut(s) 52
PshBI ATTAAT 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 52
PspEI GGTNACC 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 141
PspN4I GGNNCC 4 cut(s) 53, 54, 196, 369
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
RseI CAYNNNNRTG 2 cut(s) 200, 278
SaqAI TTAA 4 cut(s) 108, 183, 377, 381
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 207
SetI ASST 3 cut(s) 32, 253, 300
SfaNI GCATC 1 cut(s) 88
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 200, 278
Sse9I AATT 5 cut(s) 225, 302, 347, 357, 378
SsiI CCGC 1 cut(s) 63
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 190
TaqI TCGA 2 cut(s) 26, 285
TasI AATT 5 cut(s) 225, 302, 347, 357, 378
TfiI GAWTC 4 cut(s) 89, 187, 244, 386
Tru1I TTAA 4 cut(s) 108, 183, 377, 381
Tru9I TTAA 4 cut(s) 108, 183, 377, 381
TseFI GTSAC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 148, 360
VpaK11BI GGWCC 1 cut(s) 52
VspI ATTAAT 1 cut(s) 381
XapI RAATTY 3 cut(s) 225, 347, 357
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.