Rh5CG578800

NADP-dependent alkenal double bond reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000196
Physical Location & Seq
Forward (+)
82204119 .. 82204766
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG578800.1

Sequence Viewer

Length: 237 bp
ATGCCTGGTATGACTGCCTATGCTGGTTTTTATGAGATCTTCTCTCCTAAGAAAGGAGAGACGGTCTTCGTTTCAGCGGCATCAGGAGCGGTAGGTCAGCTTGTTGGCCAATTTGCCAAGTTAGCCAGGTGCTATGTTGTTGGGAGTGCTGGAAGCAAAGACAAGGTTGATTTGCTGAAGAACAAGTTTGGCTTTGACCAGAAAGTCCGTAAATGGATCACGAAAGAGGTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

78

Amino Acids

8.47

Weight (kDa)

9.52

Isoelectric Point (pI)

17.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 89
AciI CCGC 2 cut(s) 77, 89
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 53
AjnI CCWGG 2 cut(s) 4, 125
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 224
AoxI GGCC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 6, 127
BcoDI GTCTC 1 cut(s) 53
BglII AGATCT 1 cut(s) 36
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 6, 127
BmrFI CCNGG 2 cut(s) 6, 127
BmsI GCATC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 53
BseBI CCWGG 2 cut(s) 6, 127
BseLI CCNNNNNNNGG 1 cut(s) 53
BshFI GGCC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 36, 216
BspACI CCGC 2 cut(s) 77, 89
BspANI GGCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 89
BssMI GATC 2 cut(s) 36, 216
Bst2UI CCWGG 2 cut(s) 6, 127
Bst4CI ACNGT 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 48
BstENI CCTNNNNNAGG 1 cut(s) 51
BstKTI GATC 2 cut(s) 39, 219
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 36, 216
BstMWI GCNNNNNNNGC 2 cut(s) 86, 122
BstNI CCWGG 2 cut(s) 6, 127
BstSCI CCNGG 2 cut(s) 4, 125
BstV2I GAAGAC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 108
CviJI RGCY 4 cut(s) 100, 108, 125, 192
CviKI_1 RGCY 4 cut(s) 100, 108, 125, 192
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 38, 218
DpnII GATC 2 cut(s) 36, 216
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 4, 125
Esp3I CGTCTC 1 cut(s) 53
FaiI YATR 4 cut(s) 11, 21, 33, 135
FalI AAGNNNNNCTT 2 cut(s) 176, 208
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 232
Hpy188III TCNNGA 2 cut(s) 84, 220
Hpy8I GTNNAC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 122
HpyF3I CTNAG 1 cut(s) 48
Kzo9I GATC 2 cut(s) 36, 216
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 7 cut(s) 9, 18, 69, 112, 135, 139, 212
LweI GCATC 1 cut(s) 89
MalI GATC 2 cut(s) 38, 218
MbiI CCGCTC 1 cut(s) 89
MboI GATC 2 cut(s) 36, 216
MboII GAAGA 3 cut(s) 31, 58, 190
MflI RGATCY 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 1 cut(s) 110
MluNI TGGCCA 1 cut(s) 108
MnlI CCTC 1 cut(s) 220
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 77
MspR9I CCNGG 2 cut(s) 6, 127
MvaI CCWGG 2 cut(s) 6, 127
MwoI GCNNNNNNNGC 2 cut(s) 86, 122
NdeII GATC 2 cut(s) 36, 216
PkrI GCNGC 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 4, 125
PspGI CCWGG 2 cut(s) 4, 125
PsuI RGATCY 1 cut(s) 36
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 36, 216
ScrFI CCNGG 2 cut(s) 6, 127
SetI ASST 5 cut(s) 97, 102, 131, 168, 231
SfaNI GCATC 1 cut(s) 89
Sse9I AATT 1 cut(s) 110
SsiI CCGC 2 cut(s) 77, 89
StyD4I CCNGG 2 cut(s) 4, 125
TaaI ACNGT 1 cut(s) 64
TasI AATT 1 cut(s) 110
TauI GCSGC 1 cut(s) 80
TspGWI ACGGA 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.