Rmu_sc0020800.1_g000005

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020800.1
OG0000196
Physical Location & Seq
Forward (+)
11419 .. 11940
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020800.1_g000005.1.cds

Sequence Viewer

Length: 303 bp
atggcgactccctctgaagtgatcagcaacaagcaggtgatactcaaagactatgtcaccggcttccccaaagaatccgacatggaattgcgcacggccagaaccacactgaagctgccacaaggttccaccgggcctataaccggatttggagtggctaaagttttggagtctggggatgcaaagtttgagcagggcgacttgatttgggggattactggctgggaagagtacagtctcatcactgcaacacactctctctttaagattcaccacgaccccaatattcctctctcttattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

100

Amino Acids

11.02

Weight (kDa)

5.49

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 25
Acc16I TGCGCA 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 2 cut(s) 36, 131
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 143
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 242
AoxI GGCC 2 cut(s) 96, 134
ApeKI GCWGC 1 cut(s) 115
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 3 cut(s) 49, 49, 263
BbvI GCAGC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 111
BclI TGATCA 1 cut(s) 21
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 222
BshFI GGCC 2 cut(s) 98, 136
BsiSI CCGG 3 cut(s) 60, 132, 144
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 2 cut(s) 98, 136
Bsp143I GATC 1 cut(s) 21
BspANI GGCC 2 cut(s) 98, 136
BspLI GGNNCC 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 59
BssMI GATC 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 222
BstF5I GGATG 1 cut(s) 184
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 2 cut(s) 98, 136
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 107, 243
BveI ACCTGC 1 cut(s) 25
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 232
CviAII CATG 1 cut(s) 82
CviJI RGCY 6 cut(s) 63, 98, 115, 136, 158, 222
CviKI_1 RGCY 6 cut(s) 63, 98, 115, 136, 158, 222
CviQI GTAC 1 cut(s) 232
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco57I CTGAAG 2 cut(s) 36, 131
FaeI CATG 1 cut(s) 85
FaiI YATR 3 cut(s) 54, 83, 140
FatI CATG 1 cut(s) 81
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 116
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 116
GsaI CCCAGC 1 cut(s) 226
HaeIII GGCC 2 cut(s) 98, 136
HapII CCGG 3 cut(s) 60, 132, 144
HhaI GCGC 1 cut(s) 93
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 4 cut(s) 7, 74, 170, 268
HpaII CCGG 3 cut(s) 60, 132, 144
HphI GGTGA 3 cut(s) 49, 49, 263
Hpy188I TCNGA 2 cut(s) 16, 79
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 2 cut(s) 182, 248
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 9 cut(s) 20, 73, 112, 145, 157, 159, 179, 204, 208
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 239
MluCI AATT 1 cut(s) 86
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 2 cut(s) 22, 300
MseI TTAA 1 cut(s) 264
MspI CCGG 3 cut(s) 60, 132, 144
MspR9I CCNGG 1 cut(s) 133
NciI CCSGG 1 cut(s) 133
NdeII GATC 1 cut(s) 21
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 55
NsbI TGCGCA 1 cut(s) 92
PaqCI CACCTGC 1 cut(s) 25
PfeI GAWTC 2 cut(s) 74, 268
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PspFI CCCAGC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 133
SetI ASST 3 cut(s) 39, 117, 127
SfaNI GCATC 1 cut(s) 169
Sse9I AATT 1 cut(s) 86
SspI AATATT 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 236
TasI AATT 1 cut(s) 86
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 2 cut(s) 74, 268
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 2 cut(s) 114, 250
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 55
TspRI CASTG 2 cut(s) 114, 250
Tth111I GACNNNGTC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.