Rmu_sc0020800.1_g000007

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020800.1
OG0000196
Physical Location & Seq
Forward (+)
17660 .. 18515
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020800.1_g000007.1.cds

Sequence Viewer

Length: 627 bp
atgcctggaattactgcttatgctggtctttatgagctttgctcacctaagaaaggagagacggtctatgtttcagcagcatctggagcagtaggtcaactagttggccagtttgccaaactcatgggttgctatgttgtcagaagtgctggaagtaaagaaaaggttgatttgctgaagaacaagtttgggtttgacgaggctttcaattataaagaagaatctaacttggatgcagctttgaaaaggtactttcctgaaggtatcgatatatactttgagaatgttgggggaaagatgcttgatgcggtgctactaaacatgagattccgtggccgagttgcagtttgcgggatgatctcacagtacaaccttgagaagcctgaaggtgtacataacttaatgtctctgatctccacagaggtccggatgcaaggttttgttgcttttaattactatcatctgtatggcaagtttcttgaaatggtcctgcctcacataaaagaaaggaaggttatgtacgtggaagatgtagttgaaggccttgagagcggtccctcggctctggttggactctttgcaggtcgcaatgtaggaaagcaagttgttgttgtctcctgggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

208

Amino Acids

23.08

Weight (kDa)

6.84

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 572
AccBSI CCGCTC 1 cut(s) 552
AccIII TCCGGA 1 cut(s) 426
AciI CCGC 3 cut(s) 308, 351, 552
AcoI YGGCCR 2 cut(s) 106, 334
AcuI CTGAAG 3 cut(s) 197, 279, 405
AfaI GTAC 4 cut(s) 251, 368, 393, 521
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 4 cut(s) 208, 244, 482, 539
AhlI ACTAGT 1 cut(s) 100
AjnI CCWGG 2 cut(s) 4, 617
AluBI AGCT 2 cut(s) 37, 239
AluI AGCT 2 cut(s) 37, 239
Alw26I GTCTC 3 cut(s) 53, 411, 619
AlwNI CAGNNNCTG 1 cut(s) 83
Aor13HI TCCGGA 1 cut(s) 426
AoxI GGCC 3 cut(s) 106, 334, 541
ApeKI GCWGC 2 cut(s) 77, 236
AspS9I GGNCC 3 cut(s) 424, 487, 554
AsuHPI GGTGA 1 cut(s) 36
AvaII GGWCC 3 cut(s) 424, 487, 554
BalI TGGCCA 1 cut(s) 108
BarI GAAGNNNNNNTAC 2 cut(s) 503, 535
BbvI GCAGC 2 cut(s) 89, 248
BciT130I CCWGG 2 cut(s) 6, 619
BcoDI GTCTC 3 cut(s) 53, 411, 619
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 572
BisI GCNGC 2 cut(s) 78, 237
BlsI GCNGC 2 cut(s) 79, 238
Bme1390I CCNGG 2 cut(s) 6, 619
Bme18I GGWCC 3 cut(s) 424, 487, 554
BmgT120I GGNCC 3 cut(s) 424, 487, 554
BmiI GGNNCC 1 cut(s) 556
BmrFI CCNGG 2 cut(s) 6, 619
BmsI GCATC 5 cut(s) 89, 223, 288, 295, 420
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 395, 566
Bsa29I ATCGAT 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 523
BsaJI CCNNGG 3 cut(s) 331, 558, 618
BsaWI WCCGGW 1 cut(s) 426
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 595
BseAI TCCGGA 1 cut(s) 426
BseBI CCWGG 2 cut(s) 6, 619
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 331, 558, 618
BseGI GGATG 3 cut(s) 238, 360, 435
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 595
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 89, 248
BshFI GGCC 3 cut(s) 108, 336, 543
BshVI ATCGAT 1 cut(s) 267
BsiSI CCGG 1 cut(s) 427
BslFI GGGAC 1 cut(s) 540
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 3 cut(s) 53, 411, 619
BsmBI CGTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 540
BsnI GGCC 3 cut(s) 108, 336, 543
Bsp13I TCCGGA 1 cut(s) 426
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 2 cut(s) 357, 411
BspACI CCGC 3 cut(s) 308, 351, 552
BspANI GGCC 3 cut(s) 108, 336, 543
BspDI ATCGAT 1 cut(s) 267
BspEI TCCGGA 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 572
BsrBI CCGCTC 1 cut(s) 552
BsrDI GCAATG 1 cut(s) 595
BsrGI TGTACA 1 cut(s) 391
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 3 cut(s) 331, 558, 618
BssMI GATC 2 cut(s) 357, 411
Bst2UI CCWGG 2 cut(s) 6, 619
Bst4CI ACNGT 2 cut(s) 64, 366
BstAUI TGTACA 1 cut(s) 391
BstBAI YACGTR 1 cut(s) 523
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 331
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 238, 360, 435
BstKTI GATC 2 cut(s) 360, 414
BstMAI GTCTC 3 cut(s) 53, 411, 619
BstMBI GATC 2 cut(s) 357, 411
BstMWI GCNNNNNNNGC 2 cut(s) 86, 549
BstNI CCWGG 2 cut(s) 6, 619
BstSCI CCNGG 2 cut(s) 4, 617
BstV1I GCAGC 2 cut(s) 89, 248
BstXI CCANNNNNNTGG 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 267
BsuRI GGCC 3 cut(s) 108, 336, 543
BsuTUI ATCGAT 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 331
BtsCI GGATG 3 cut(s) 238, 360, 435
BveI ACCTGC 1 cut(s) 572
CaiI CAGNNNCTG 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 424, 487, 554
ClaI ATCGAT 1 cut(s) 267
Csp6I GTAC 4 cut(s) 250, 367, 392, 520
CviAII CATG 2 cut(s) 124, 322
CviJI RGCY 8 cut(s) 37, 108, 203, 239, 336, 382, 543, 563
CviKI_1 RGCY 8 cut(s) 37, 108, 203, 239, 336, 382, 543, 563
CviQI GTAC 4 cut(s) 250, 367, 392, 520
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 359, 413
DpnII GATC 2 cut(s) 357, 411
EaeI YGGCCR 2 cut(s) 106, 334
Eco147I AGGCCT 1 cut(s) 543
Eco47I GGWCC 3 cut(s) 424, 487, 554
Eco57I CTGAAG 3 cut(s) 197, 279, 405
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 4, 617
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 2 cut(s) 127, 325
FaqI GGGAC 1 cut(s) 540
FatI CATG 2 cut(s) 123, 321
FauI CCCGC 1 cut(s) 344
Fnu4HI GCNGC 2 cut(s) 78, 237
FokI GGATG 3 cut(s) 245, 367, 442
Fsp4HI GCNGC 2 cut(s) 78, 237
FspBI CTAG 1 cut(s) 101
GluI GCNGC 2 cut(s) 78, 237
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 3 cut(s) 108, 336, 543
HapII CCGG 1 cut(s) 427
Hin1II CATG 2 cut(s) 127, 325
HincII GTYRAC 1 cut(s) 98
HindII GTYRAC 1 cut(s) 98
HinfI GANTC 3 cut(s) 221, 327, 573
HpaII CCGG 1 cut(s) 427
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 2 cut(s) 98, 392
Hpy188I TCNGA 2 cut(s) 143, 411
Hpy188III TCNNGA 4 cut(s) 84, 257, 427, 479
Hpy8I GTNNAC 2 cut(s) 98, 392
HpyAV CCTTC 4 cut(s) 254, 380, 505, 533
HpyCH4III ACNGT 2 cut(s) 64, 366
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 4 cut(s) 236, 344, 433, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 549
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 2 cut(s) 127, 325
Kpn2I TCCGGA 1 cut(s) 426
Kzo9I GATC 2 cut(s) 357, 411
LmnI GCTCC 1 cut(s) 86
Lsp1109I GCAGC 2 cut(s) 89, 248
LweI GCATC 5 cut(s) 89, 223, 288, 295, 420
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 522
MalI GATC 2 cut(s) 359, 413
MbiI CCGCTC 1 cut(s) 552
MboI GATC 2 cut(s) 357, 411
MboII GAAGA 3 cut(s) 190, 230, 539
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 3 cut(s) 9, 208, 451
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 1 cut(s) 567
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 4 cut(s) 193, 415, 504, 568
Mox20I TGGCCA 1 cut(s) 108
MroI TCCGGA 1 cut(s) 426
MscI TGGCCA 1 cut(s) 108
MseI TTAA 2 cut(s) 401, 450
MslI CAYNNNNRTG 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 108
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 2 cut(s) 6, 619
MvaI CCWGG 2 cut(s) 6, 619
MwoI GCNNNNNNNGC 2 cut(s) 86, 549
NdeII GATC 2 cut(s) 357, 411
NlaIII CATG 2 cut(s) 127, 325
NlaIV GGNNCC 1 cut(s) 556
NmeAIII GCCGAG 2 cut(s) 362, 539
PceI AGGCCT 1 cut(s) 543
PfeI GAWTC 2 cut(s) 221, 327
PkrI GCNGC 2 cut(s) 79, 238
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
Ppu21I YACGTR 1 cut(s) 523
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 4, 617
PspGI CCWGG 2 cut(s) 4, 617
PspN4I GGNNCC 1 cut(s) 556
PspPI GGNCC 3 cut(s) 424, 487, 554
PstNI CAGNNNCTG 1 cut(s) 83
RsaI GTAC 4 cut(s) 251, 368, 393, 521
RsaNI GTAC 4 cut(s) 250, 367, 392, 520
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 2 cut(s) 401, 450
SatI GCNGC 2 cut(s) 78, 237
Sau3AI GATC 2 cut(s) 357, 411
Sau96I GGNCC 3 cut(s) 424, 487, 554
SchI GAGTC 1 cut(s) 567
ScrFI CCNGG 2 cut(s) 6, 619
SfaNI GCATC 5 cut(s) 89, 223, 288, 295, 420
SinI GGWCC 3 cut(s) 424, 487, 554
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 2 cut(s) 374, 545
SmoI CTYRAG 2 cut(s) 374, 545
SpeI ACTAGT 1 cut(s) 100
Sse9I AATT 3 cut(s) 9, 208, 451
SseBI AGGCCT 1 cut(s) 543
SsiI CCGC 3 cut(s) 308, 351, 552
SspMI CTAG 1 cut(s) 101
StuI AGGCCT 1 cut(s) 543
StyD4I CCNGG 2 cut(s) 4, 617
TaaI ACNGT 2 cut(s) 64, 366
TaiI ACGT 1 cut(s) 525
TaqI TCGA 1 cut(s) 267
TasI AATT 3 cut(s) 9, 208, 451
TatI WGTACW 2 cut(s) 366, 391
TfiI GAWTC 2 cut(s) 221, 327
Tru1I TTAA 2 cut(s) 401, 450
Tru9I TTAA 2 cut(s) 401, 450
TseI GCWGC 2 cut(s) 77, 236
TspGWI ACGGA 1 cut(s) 320
VpaK11BI GGWCC 3 cut(s) 424, 487, 554
XagI CCTNNNNNAGG 1 cut(s) 51
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.