RchiOBHm_Chr7g0238011

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000196
Physical Location & Seq
Reverse (-)
63360033 .. 63364177
4145 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21331

Sequence Viewer

Length: 357 bp
ATGGCTAAAGTTTTGGAATCTGGGGATGCAAAGTTTAAGCAAGGCGACTTGGTTTGGGGAATGACTGGCTGGGAATGGTATAGTATGCGTGGTTTGACTGCCTATGCTGGTTTTTATGAGATCTTCTCTCCTAAGAAAGGAGAGACGGTCTTCGTTTCATCGGCATCAGAAGCGGTAGGTCAGCTTGTTGGCCAATTTGCCAAGTTGGCCAGGTGCTATGTTGTTGGGAGTGCTGGAAGCAAAGACAAGGTTGATTTGCTGAAGAACAAGTTTCGCTTTGACCAGAAAGTCAGTAAAATGGATCACAAAAGAGGTGGACTAAAGCATGCACAAGTTTGGTTTATGGGAAATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

118

Amino Acids

13.18

Weight (kDa)

9.68

Isoelectric Point (pI)

23.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 287
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 2 cut(s) 190, 207
AcuI CTGAAG 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 137
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 309
AoxI GGCC 2 cut(s) 190, 207
BalI TGGCCA 2 cut(s) 192, 209
BbsI GAAGAC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 137
BglI GCCNNNNNGGC 1 cut(s) 206
BglII AGATCT 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 211
BmsI GCATC 2 cut(s) 16, 173
BpiI GAAGAC 1 cut(s) 142
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 69
BshFI GGCC 2 cut(s) 192, 209
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 137
BsmBI CGTCTC 1 cut(s) 137
BsnI GGCC 2 cut(s) 192, 209
Bsp143I GATC 2 cut(s) 120, 301
BspACI CCGC 1 cut(s) 173
BspANI GGCC 2 cut(s) 192, 209
BspPI GGATC 1 cut(s) 309
BsrI ACTGG 1 cut(s) 70
BssMI GATC 2 cut(s) 120, 301
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 132
BstENI CCTNNNNNAGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 2 cut(s) 123, 304
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 120, 301
BstMWI GCNNNNNNNGC 2 cut(s) 170, 206
BstNI CCWGG 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 2 cut(s) 192, 209
BtsCI GGATG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 327
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 1 cut(s) 326
CviJI RGCY 5 cut(s) 5, 69, 184, 192, 209
CviKI_1 RGCY 5 cut(s) 5, 69, 184, 192, 209
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 122, 303
DpnII GATC 2 cut(s) 120, 301
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 2 cut(s) 190, 207
Eco57I CTGAAG 1 cut(s) 281
EcoNI CCTNNNNNAGG 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 209
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 1 cut(s) 329
FaiI YATR 7 cut(s) 81, 86, 105, 117, 219, 327, 344
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 1 cut(s) 325
FokI GGATG 1 cut(s) 38
GsaI CCCAGC 1 cut(s) 73
HaeIII GGCC 2 cut(s) 192, 209
Hin1II CATG 1 cut(s) 329
HinfI GANTC 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 317
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 29, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 206
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 1 cut(s) 329
Kzo9I GATC 2 cut(s) 120, 301
LpnPI CCDG 8 cut(s) 6, 51, 55, 93, 196, 219, 223, 296
LweI GCATC 2 cut(s) 16, 173
MalI GATC 2 cut(s) 122, 303
MboI GATC 2 cut(s) 120, 301
MboII GAAGA 3 cut(s) 115, 142, 274
MflI RGATCY 1 cut(s) 120
MlsI TGGCCA 2 cut(s) 192, 209
MluCI AATT 1 cut(s) 194
MluNI TGGCCA 2 cut(s) 192, 209
MnlI CCTC 1 cut(s) 305
Mox20I TGGCCA 2 cut(s) 192, 209
MscI TGGCCA 2 cut(s) 192, 209
MseI TTAA 1 cut(s) 36
Msp20I TGGCCA 2 cut(s) 192, 209
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
MwoI GCNNNNNNNGC 2 cut(s) 170, 206
NdeII GATC 2 cut(s) 120, 301
NlaIII CATG 1 cut(s) 329
NspI RCATGY 1 cut(s) 329
PaeI GCATGC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 209
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 120
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 2 cut(s) 120, 301
ScrFI CCNGG 1 cut(s) 211
SetI ASST 5 cut(s) 181, 186, 215, 252, 316
SfaNI GCATC 2 cut(s) 16, 173
SphI GCATGC 1 cut(s) 329
Sse9I AATT 1 cut(s) 194
SsiI CCGC 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 148
TasI AATT 1 cut(s) 194
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 147
XagI CCTNNNNNAGG 1 cut(s) 135
XceI RCATGY 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.