Rroxscaffold_2G00155460

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000196
Physical Location & Seq
Forward (+)
91852115 .. 91854913
2799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155460.1

Sequence Viewer

Length: 735 bp
ATGGCTAGCGGAGAAGAAGTGAGGAACAAGCAGGTGATATTCGGAGACTATATCACCGGCTTCCCCAAAGAATCCGACCTCAAATTGACCACTGCCACAACCAAACTCAAGCTTCCAGAAGGTTCGACTGGCCTCCTCGTCAAGAACCTCTACTTGTCCTGCGATCCTTACATGCGAAGCCGTATGACCAAGCACGACAGGCCCACTTATGTCCAATCCTTCACGCCCGGCTCGCCTGTAACTGGTCTGGGAGTGGCTAAAGTCCTGGAATCTGGGGATCCAAAGTTTAAGCCAGGGGACTTGGTTTGGGGTCACACTGGTTGGGAAGAATATAGTGTCATCACCACAGAGTCTCTGATTAAGATTCACCACACTGATGTGCCTCTCTCTTACTATACTGGACTTCTCGGTATGCCTGGAATGACTGCTTATGCTGGTTTTTATGAGATCTGCTCTCCTAAGAAAGGAGAGACAGTCTACATTTCAGCCGCATCTGGAGCGGTAGGTCAGCTTGTTGGCCAATTTGCAAAGTTAACAGGTTGTTATGTTGTTGGGAGTGCTGGAAGCAAGGAAAAGGTTGATCTGCTGAAGAACAAATTTGGATTTGACGAGGCTTTCAACTATAAAGACGAAACTGACCTAGATGCAGCTTTAAGAAGGTACTTTCCAGATGGTATTGACATTTACTTTGAAAATGTGGGGGAAAGATGCTTGATGCAGTGCTACCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

244

Amino Acids

26.92

Weight (kDa)

5.86

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 10 - 122 1.9e-27 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 167 - 243 1.1e-15 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 22
AccBSI CCGCTC 1 cut(s) 500
AccI GTMKAC 1 cut(s) 477
AciI CCGC 3 cut(s) 9, 489, 500
AclWI GGATC 3 cut(s) 158, 272, 285
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 608
AfaI GTAC 1 cut(s) 662
AfiI CCNNNNNNNGG 2 cut(s) 242, 464
AgsI TTSAA 2 cut(s) 619, 692
AjnI CCWGG 3 cut(s) 264, 292, 415
AleI CACNNNNGTG 1 cut(s) 377
AluBI AGCT 3 cut(s) 112, 511, 650
AluI AGCT 3 cut(s) 112, 511, 650
Alw26I GTCTC 3 cut(s) 39, 357, 464
AlwI GGATC 3 cut(s) 158, 272, 285
AoxI GGCC 3 cut(s) 130, 200, 517
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 1 cut(s) 596
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AspS9I GGNCC 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 4 cut(s) 46, 46, 334, 359
AsuNHI GCTAGC 1 cut(s) 5
BalI TGGCCA 1 cut(s) 519
BamHI GGATCC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 659
BccI CCATC 1 cut(s) 665
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 3 cut(s) 266, 294, 417
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 3 cut(s) 39, 357, 464
BfaI CTAG 2 cut(s) 6, 641
BfuAI ACCTGC 1 cut(s) 22
BglII AGATCT 1 cut(s) 447
BisI GCNGC 2 cut(s) 489, 648
BlsI GCNGC 2 cut(s) 490, 649
Bme1390I CCNGG 4 cut(s) 228, 266, 294, 417
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 4 cut(s) 228, 266, 294, 417
BmsI GCATC 4 cut(s) 500, 634, 698, 705
BmtI GCTAGC 1 cut(s) 9
BplI GAGNNNNNCTC 2 cut(s) 437, 469
BpmI CTGGAG 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 293
BsaXI ACNNNNNCTCC 3 cut(s) 33, 459, 489
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 464
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 4 cut(s) 133, 247, 322, 403
BseBI CCWGG 3 cut(s) 266, 294, 417
BseDI CCNNGG 1 cut(s) 293
BseLI CCNNNNNNNGG 2 cut(s) 242, 464
BseNI ACTGG 4 cut(s) 133, 247, 322, 403
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 659
BshFI GGCC 3 cut(s) 132, 202, 519
BsiSI CCGG 2 cut(s) 57, 228
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 2 cut(s) 242, 464
BsmAI GTCTC 3 cut(s) 39, 357, 464
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 3 cut(s) 132, 202, 519
Bsp143I GATC 4 cut(s) 163, 277, 447, 580
BspACI CCGC 3 cut(s) 9, 489, 500
BspANI GGCC 3 cut(s) 132, 202, 519
BspLI GGNNCC 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 22
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 3 cut(s) 158, 272, 285
BsrBI CCGCTC 1 cut(s) 500
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 4 cut(s) 133, 247, 322, 403
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 4 cut(s) 163, 277, 447, 580
Bst2UI CCWGG 3 cut(s) 266, 294, 417
Bst4CI ACNGT 1 cut(s) 475
BstC8I GCNNGC 2 cut(s) 7, 233
BstDEI CTNAG 1 cut(s) 459
BstENI CCTNNNNNAGG 1 cut(s) 462
BstKTI GATC 4 cut(s) 166, 280, 450, 583
BstMAI GTCTC 3 cut(s) 39, 357, 464
BstMBI GATC 4 cut(s) 163, 277, 447, 580
BstMWI GCNNNNNNNGC 3 cut(s) 199, 232, 497
BstNI CCWGG 3 cut(s) 266, 294, 417
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 4 cut(s) 226, 264, 292, 415
BstV1I GCAGC 1 cut(s) 659
BstX2I RGATCY 2 cut(s) 277, 447
BstYI RGATCY 2 cut(s) 277, 447
BsuRI GGCC 3 cut(s) 132, 202, 519
BtsI GCAGTG 2 cut(s) 90, 725
BtsIMutI CAGTG 4 cut(s) 90, 315, 372, 725
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 7, 233
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 661
CviAII CATG 1 cut(s) 172
CviQI GTAC 1 cut(s) 661
DdeI CTNAG 1 cut(s) 459
DpnI GATC 4 cut(s) 165, 279, 449, 582
DpnII GATC 4 cut(s) 163, 277, 447, 580
EaeI YGGCCR 1 cut(s) 517
Eco57I CTGAAG 1 cut(s) 608
EcoNI CCTNNNNNAGG 1 cut(s) 462
EcoRII CCWGG 3 cut(s) 264, 292, 415
FaeI CATG 1 cut(s) 175
FaqI GGGAC 1 cut(s) 311
FatI CATG 1 cut(s) 171
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 2 cut(s) 489, 648
Fsp4HI GCNGC 2 cut(s) 489, 648
FspBI CTAG 2 cut(s) 6, 641
GluI GCNGC 2 cut(s) 489, 648
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 3 cut(s) 132, 202, 519
HapII CCGG 2 cut(s) 57, 228
Hin1II CATG 1 cut(s) 175
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 4 cut(s) 71, 269, 350, 364
HpaI GTTAAC 1 cut(s) 534
HpaII CCGG 2 cut(s) 57, 228
HphI GGTGA 4 cut(s) 46, 46, 334, 359
Hpy166II GTNNAC 2 cut(s) 478, 534
Hpy188I TCNGA 3 cut(s) 44, 76, 357
Hpy188III TCNNGA 4 cut(s) 116, 142, 495, 668
Hpy8I GTNNAC 2 cut(s) 478, 534
HpyAV CCTTC 3 cut(s) 113, 229, 651
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4V TGCA 3 cut(s) 527, 647, 718
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 232, 497
HpyF3I CTNAG 1 cut(s) 459
Hsp92II CATG 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 534
Kzo9I GATC 4 cut(s) 163, 277, 447, 580
LmnI GCTCC 1 cut(s) 497
Lsp1109I GCAGC 1 cut(s) 659
LweI GCATC 4 cut(s) 500, 634, 698, 705
MaeI CTAG 2 cut(s) 6, 641
MaeIII GTNAC 2 cut(s) 238, 311
MalI GATC 4 cut(s) 165, 279, 449, 582
MbiI CCGCTC 1 cut(s) 500
MboI GATC 4 cut(s) 163, 277, 447, 580
MboII GAAGA 3 cut(s) 26, 338, 601
MflI RGATCY 2 cut(s) 277, 447
MlsI TGGCCA 1 cut(s) 519
MluCI AATT 3 cut(s) 83, 521, 596
MluNI TGGCCA 1 cut(s) 519
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 7 cut(s) 15, 89, 143, 146, 158, 393, 604
Mox20I TGGCCA 1 cut(s) 519
MscI TGGCCA 1 cut(s) 519
MseI TTAA 4 cut(s) 288, 360, 533, 653
MslI CAYNNNNRTG 2 cut(s) 375, 377
Msp20I TGGCCA 1 cut(s) 519
MspI CCGG 2 cut(s) 57, 228
MspR9I CCNGG 4 cut(s) 228, 266, 294, 417
MvaI CCWGG 3 cut(s) 266, 294, 417
MwoI GCNNNNNNNGC 3 cut(s) 199, 232, 497
NciI CCSGG 1 cut(s) 228
NdeII GATC 4 cut(s) 163, 277, 447, 580
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 1 cut(s) 175
OliI CACNNNNGTG 1 cut(s) 377
PaqCI CACCTGC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 71, 269, 364
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 2 cut(s) 490, 649
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp6I CCWGG 3 cut(s) 264, 292, 415
PspGI CCWGG 3 cut(s) 264, 292, 415
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 201
PsuI RGATCY 2 cut(s) 277, 447
RsaI GTAC 1 cut(s) 662
RsaNI GTAC 1 cut(s) 661
RseI CAYNNNNRTG 2 cut(s) 375, 377
SaqAI TTAA 4 cut(s) 288, 360, 533, 653
SatI GCNGC 2 cut(s) 489, 648
Sau3AI GATC 4 cut(s) 163, 277, 447, 580
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 4 cut(s) 228, 266, 294, 417
SfaNI GCATC 4 cut(s) 500, 634, 698, 705
SmiMI CAYNNNNRTG 2 cut(s) 375, 377
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 3 cut(s) 83, 521, 596
SsiI CCGC 3 cut(s) 9, 489, 500
SspMI CTAG 2 cut(s) 6, 641
StyD4I CCNGG 4 cut(s) 226, 264, 292, 415
TaaI ACNGT 1 cut(s) 475
TaqI TCGA 1 cut(s) 125
TasI AATT 3 cut(s) 83, 521, 596
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 3 cut(s) 71, 269, 364
Tru1I TTAA 4 cut(s) 288, 360, 533, 653
Tru9I TTAA 4 cut(s) 288, 360, 533, 653
TscAI CASTG 4 cut(s) 97, 322, 379, 725
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 1 cut(s) 647
Tsp45I GTSAC 1 cut(s) 311
TspRI CASTG 4 cut(s) 97, 322, 379, 725
XagI CCTNNNNNAGG 1 cut(s) 462
XapI RAATTY 1 cut(s) 596
XceI RCATGY 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 477
XspI CTAG 2 cut(s) 6, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.