Rh1BG054800

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000196
Physical Location & Seq
Reverse (-)
8020922 .. 8022691
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG054800.1

Sequence Viewer

Length: 873 bp
ATGAGAGACCGCATGACCAAACATGAAACTGCCTCTTATGTCGAAACTTTCCACCCCGGTTCCCCTATAACCGGATTTGGAGTGGCTAAAGTTTTGGAGTCTGGGGATGCAAAGTTTGAGCAGGGCGACTTGATTTGGGGGATTACTGGCTGGGAAGAGTACAGTCTCATCACTGCAACACACTCTCTCTTTAAGATTCACCACGACCCCAATATTCCTCTCTCTTATCATACCGGAATTCTCGGTATGCCTGGAATTACTGCTTATGCTGGTCTTTATGAGCTTTGCTCACCTAAGAAAGGAGAGACGGTCTATGTTTCAGCAGCATCTGGAGCAGTAGGTCAACTAGTTGGCCAGTTTGCCAAACTCATGGGTTGCTATGTTGTCAGAAGTGCTGGAAGTAAAGAAAAGGTTGATTTGCTGAAGAACAAGTTTGGGTTTGACGAGGCTTTCAATTATAAAGAAGAATCTAACTTGGATGCAGCTTTGAAAAGGTACTTTCCTGAAGGTATCGATATATACTTTGAGAATGTTGGGGGAAAGATGCTTGATGCGGTGCTACTAAACATGAGATTCCGTGGCCGAGTTGCAGTTTGCGGGATGATCTCACAGTACAACCTTGAGAAGCCTGAAGGTGTACATAACTTAATGTCTCTGATCTCCACAGAGGTCCGGATGCAAGGTTTTGTTGCTTTTAATTACTATCATCTGTATGGCAAGTTTCTTGAAATGGTCCTGCCTCACATAAAAGAAGGGAAGGTTATGTACGTGGAAGATGTAGTTGAAGGCCTTGAGAGCGGTCCCTCGGCTCTGGTTGGACTCTTTGCAGGTCGCAATGTAGGAAAGCAAGTTGTTGTTGTCTCCTGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

290

Amino Acids

32.11

Weight (kDa)

6.01

Isoelectric Point (pI)

28.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 1 - 60 5.7e-12 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 112 - 242 1.7e-23 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 146 - 285 3.4e-06 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 818
AccBSI CCGCTC 1 cut(s) 798
AccIII TCCGGA 1 cut(s) 672
AciI CCGC 4 cut(s) 10, 554, 597, 798
AcoI YGGCCR 2 cut(s) 352, 580
AcsI RAATTY 1 cut(s) 237
AcuI CTGAAG 3 cut(s) 443, 525, 651
AfaI GTAC 5 cut(s) 161, 497, 614, 639, 767
AfiI CCNNNNNNNGG 2 cut(s) 71, 299
AgsI TTSAA 4 cut(s) 454, 490, 728, 785
AhlI ACTAGT 1 cut(s) 346
AjnI CCWGG 2 cut(s) 250, 863
AluBI AGCT 2 cut(s) 283, 485
AluI AGCT 2 cut(s) 283, 485
Alw26I GTCTC 4 cut(s) 170, 299, 657, 865
AlwNI CAGNNNCTG 1 cut(s) 329
Aor13HI TCCGGA 1 cut(s) 672
AoxI GGCC 3 cut(s) 352, 580, 787
ApeKI GCWGC 2 cut(s) 323, 482
ApoI RAATTY 1 cut(s) 237
AspS9I GGNCC 3 cut(s) 670, 733, 800
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 191, 282
AvaII GGWCC 3 cut(s) 670, 733, 800
BalI TGGCCA 1 cut(s) 354
BarI GAAGNNNNNNTAC 2 cut(s) 749, 781
BbvI GCAGC 2 cut(s) 335, 494
BciT130I CCWGG 2 cut(s) 252, 865
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 4 cut(s) 170, 299, 657, 865
BcuI ACTAGT 1 cut(s) 346
BfaI CTAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 818
BisI GCNGC 2 cut(s) 324, 483
BlsI GCNGC 2 cut(s) 325, 484
Bme1390I CCNGG 3 cut(s) 57, 252, 865
Bme18I GGWCC 3 cut(s) 670, 733, 800
BmgT120I GGNCC 3 cut(s) 670, 733, 800
BmiI GGNNCC 2 cut(s) 61, 802
BmrFI CCNGG 3 cut(s) 57, 252, 865
BmsI GCATC 6 cut(s) 97, 335, 469, 534, 541, 666
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 1 cut(s) 351
BpuEI CTTGAG 2 cut(s) 641, 812
BpuMI CCSGG 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 513
BsaAI YACGTR 1 cut(s) 769
BsaJI CCNNGG 4 cut(s) 55, 577, 804, 864
BsaWI WCCGGW 3 cut(s) 71, 233, 672
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 299
Bse1I ACTGG 2 cut(s) 151, 355
Bse3DI GCAATG 1 cut(s) 841
BseAI TCCGGA 1 cut(s) 672
BseBI CCWGG 2 cut(s) 252, 865
BseCI ATCGAT 1 cut(s) 513
BseDI CCNNGG 4 cut(s) 55, 577, 804, 864
BseGI GGATG 4 cut(s) 112, 484, 606, 681
BseLI CCNNNNNNNGG 2 cut(s) 71, 299
BseMI GCAATG 1 cut(s) 841
BseNI ACTGG 2 cut(s) 151, 355
BseXI GCAGC 2 cut(s) 335, 494
BseYI CCCAGC 1 cut(s) 150
BshFI GGCC 3 cut(s) 354, 582, 789
BshVI ATCGAT 1 cut(s) 513
BsiSI CCGG 4 cut(s) 57, 72, 234, 673
BslFI GGGAC 1 cut(s) 786
BslI CCNNNNNNNGG 2 cut(s) 71, 299
BsmAI GTCTC 4 cut(s) 170, 299, 657, 865
BsmBI CGTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 786
BsnI GGCC 3 cut(s) 354, 582, 789
Bsp13I TCCGGA 1 cut(s) 672
Bsp1407I TGTACA 1 cut(s) 637
Bsp143I GATC 2 cut(s) 603, 657
BspACI CCGC 4 cut(s) 10, 554, 597, 798
BspANI GGCC 3 cut(s) 354, 582, 789
BspDI ATCGAT 1 cut(s) 513
BspEI TCCGGA 1 cut(s) 672
BspLI GGNNCC 2 cut(s) 61, 802
BspMI ACCTGC 1 cut(s) 818
BsrBI CCGCTC 1 cut(s) 798
BsrDI GCAATG 1 cut(s) 841
BsrGI TGTACA 1 cut(s) 637
BsrI ACTGG 2 cut(s) 151, 355
BssECI CCNNGG 4 cut(s) 55, 577, 804, 864
BssMI GATC 2 cut(s) 603, 657
Bst2UI CCWGG 2 cut(s) 252, 865
Bst4CI ACNGT 3 cut(s) 164, 310, 612
Bst6I CTCTTC 1 cut(s) 150
BstAUI TGTACA 1 cut(s) 637
BstBAI YACGTR 1 cut(s) 769
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 577
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 4 cut(s) 112, 484, 606, 681
BstKTI GATC 2 cut(s) 606, 660
BstMAI GTCTC 4 cut(s) 170, 299, 657, 865
BstMBI GATC 2 cut(s) 603, 657
BstMWI GCNNNNNNNGC 2 cut(s) 332, 795
BstNI CCWGG 2 cut(s) 252, 865
BstSCI CCNGG 3 cut(s) 55, 250, 863
BstV1I GCAGC 2 cut(s) 335, 494
BstXI CCANNNNNNTGG 1 cut(s) 370
Bsu15I ATCGAT 1 cut(s) 513
BsuRI GGCC 3 cut(s) 354, 582, 789
BsuTUI ATCGAT 1 cut(s) 513
BtgI CCRYGG 1 cut(s) 577
BtsCI GGATG 4 cut(s) 112, 484, 606, 681
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 818
CaiI CAGNNNCTG 1 cut(s) 329
Cfr13I GGNCC 3 cut(s) 670, 733, 800
ClaI ATCGAT 1 cut(s) 513
Csp6I GTAC 5 cut(s) 160, 496, 613, 638, 766
CviAII CATG 4 cut(s) 13, 23, 370, 568
CviQI GTAC 5 cut(s) 160, 496, 613, 638, 766
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 605, 659
DpnII GATC 2 cut(s) 603, 657
EaeI YGGCCR 2 cut(s) 352, 580
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco147I AGGCCT 1 cut(s) 789
Eco47I GGWCC 3 cut(s) 670, 733, 800
Eco57I CTGAAG 3 cut(s) 443, 525, 651
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 237
EcoRII CCWGG 2 cut(s) 250, 863
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 4 cut(s) 16, 26, 373, 571
FaqI GGGAC 1 cut(s) 786
FatI CATG 4 cut(s) 12, 22, 369, 567
FauI CCCGC 1 cut(s) 590
Fnu4HI GCNGC 2 cut(s) 324, 483
FokI GGATG 4 cut(s) 119, 491, 613, 688
Fsp4HI GCNGC 2 cut(s) 324, 483
FspBI CTAG 1 cut(s) 347
GluI GCNGC 2 cut(s) 324, 483
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 3 cut(s) 354, 582, 789
HapII CCGG 4 cut(s) 57, 72, 234, 673
Hin1II CATG 4 cut(s) 16, 26, 373, 571
HincII GTYRAC 1 cut(s) 344
HindII GTYRAC 1 cut(s) 344
HinfI GANTC 5 cut(s) 98, 196, 467, 573, 819
HpaII CCGG 4 cut(s) 57, 72, 234, 673
HphI GGTGA 2 cut(s) 191, 282
Hpy166II GTNNAC 2 cut(s) 344, 638
Hpy188I TCNGA 2 cut(s) 389, 657
Hpy188III TCNNGA 4 cut(s) 330, 503, 673, 725
Hpy8I GTNNAC 2 cut(s) 344, 638
HpyAV CCTTC 5 cut(s) 500, 626, 746, 751, 779
HpyCH4III ACNGT 3 cut(s) 164, 310, 612
HpyCH4IV ACGT 1 cut(s) 768
HpyCH4V TGCA 6 cut(s) 110, 176, 482, 590, 679, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 795
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 768
Hsp92II CATG 4 cut(s) 16, 26, 373, 571
Kpn2I TCCGGA 1 cut(s) 672
Kzo9I GATC 2 cut(s) 603, 657
LmnI GCTCC 1 cut(s) 332
Lsp1109I GCAGC 2 cut(s) 335, 494
LweI GCATC 6 cut(s) 97, 335, 469, 534, 541, 666
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 768
MalI GATC 2 cut(s) 605, 659
MbiI CCGCTC 1 cut(s) 798
MboI GATC 2 cut(s) 603, 657
MboII GAAGA 4 cut(s) 167, 436, 476, 785
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 4 cut(s) 237, 255, 454, 697
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 2 cut(s) 107, 813
MmeI TCCRAC 1 cut(s) 796
MnlI CCTC 6 cut(s) 43, 228, 439, 661, 750, 814
Mox20I TGGCCA 1 cut(s) 354
MroI TCCGGA 1 cut(s) 672
MscI TGGCCA 1 cut(s) 354
MseI TTAA 3 cut(s) 192, 647, 696
MslI CAYNNNNRTG 1 cut(s) 711
Msp20I TGGCCA 1 cut(s) 354
MspI CCGG 4 cut(s) 57, 72, 234, 673
MspR9I CCNGG 3 cut(s) 57, 252, 865
MvaI CCWGG 2 cut(s) 252, 865
MwoI GCNNNNNNNGC 2 cut(s) 332, 795
NciI CCSGG 1 cut(s) 57
NdeII GATC 2 cut(s) 603, 657
NlaIII CATG 4 cut(s) 16, 26, 373, 571
NlaIV GGNNCC 2 cut(s) 61, 802
NmeAIII GCCGAG 2 cut(s) 608, 785
PceI AGGCCT 1 cut(s) 789
PfeI GAWTC 3 cut(s) 196, 467, 573
PkrI GCNGC 2 cut(s) 325, 484
PleI GAGTC 2 cut(s) 106, 813
PpsI GAGTC 2 cut(s) 106, 813
Ppu21I YACGTR 1 cut(s) 769
PsiI TTATAA 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 250, 863
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 2 cut(s) 250, 863
PspN4I GGNNCC 2 cut(s) 61, 802
PspPI GGNCC 3 cut(s) 670, 733, 800
PstNI CAGNNNCTG 1 cut(s) 329
RsaI GTAC 5 cut(s) 161, 497, 614, 639, 767
RsaNI GTAC 5 cut(s) 160, 496, 613, 638, 766
RseI CAYNNNNRTG 1 cut(s) 711
SaqAI TTAA 3 cut(s) 192, 647, 696
SatI GCNGC 2 cut(s) 324, 483
Sau3AI GATC 2 cut(s) 603, 657
Sau96I GGNCC 3 cut(s) 670, 733, 800
SchI GAGTC 2 cut(s) 107, 813
ScrFI CCNGG 3 cut(s) 57, 252, 865
SfaNI GCATC 6 cut(s) 97, 335, 469, 534, 541, 666
SinI GGWCC 3 cut(s) 670, 733, 800
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 2 cut(s) 620, 791
SmoI CTYRAG 2 cut(s) 620, 791
SpeI ACTAGT 1 cut(s) 346
Sse9I AATT 4 cut(s) 237, 255, 454, 697
SseBI AGGCCT 1 cut(s) 789
SsiI CCGC 4 cut(s) 10, 554, 597, 798
SspI AATATT 1 cut(s) 214
SspMI CTAG 1 cut(s) 347
StuI AGGCCT 1 cut(s) 789
StyD4I CCNGG 3 cut(s) 55, 250, 863
TaaI ACNGT 3 cut(s) 164, 310, 612
TaiI ACGT 1 cut(s) 771
TaqI TCGA 2 cut(s) 42, 513
TasI AATT 4 cut(s) 237, 255, 454, 697
TatI WGTACW 3 cut(s) 159, 612, 637
TfiI GAWTC 3 cut(s) 196, 467, 573
Tru1I TTAA 3 cut(s) 192, 647, 696
Tru9I TTAA 3 cut(s) 192, 647, 696
TscAI CASTG 1 cut(s) 178
TseI GCWGC 2 cut(s) 323, 482
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 3 cut(s) 670, 733, 800
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 1 cut(s) 237
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.