RchiOBHm_Chr2g0085351

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000196
Physical Location & Seq
Reverse (-)
804423 .. 806109
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46090

Sequence Viewer

Length: 441 bp
ATGGCGGAAATGAAGAACAAGCAGGTGATACTGAAGGAATATGTGGCGGCCGGACTCCCCAAAGAATCTGACATGGCCGTCGTCACTACCACCACCAAACTGAAGCTTCCAGAAGGCTCCGCCGGGGTTCTGGTGAAGAACCTCTACTTGTCCTGCGATCCTTACATGAGAAGCCGCATGACCAAGCGCGACTCTGCTTCTTATGTCGATCCCTTCAACCCCGGCGAGTTTAAGCAAGGCGACTTGGTTTGGGGAATGATTGGCTGGGAAGAGTATAGTCTCATCACTTCCATTCAGTATTTGTTTAAGATTCCCACCACCGATGTGCCACTGTCTTATTATACTGGAATTCTTGGTATGCCTGATATGACTGCCTATGCTGGTTTTTTTGAGATCTGCTCTCCTAAGAAAGGAGAGACGGTCTTCGTTTCAGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

146

Amino Acids

16.22

Weight (kDa)

5.48

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 7 - 76 2.2e-11 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
AasI GACNNNNNNGTC 1 cut(s) 77
Acc36I ACCTGC 1 cut(s) 13
AccII CGCG 1 cut(s) 189
AciI CCGC 4 cut(s) 5, 47, 120, 175
AclWI GGATC 2 cut(s) 152, 203
AcoI YGGCCR 2 cut(s) 48, 75
AcsI RAATTY 1 cut(s) 348
AcuI CTGAAG 2 cut(s) 53, 122
AfiI CCNNNNNNNGG 1 cut(s) 410
AgsI TTSAA 1 cut(s) 217
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 2 cut(s) 284, 410
AlwI GGATC 2 cut(s) 152, 203
AoxI GGCC 2 cut(s) 48, 75
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 1 cut(s) 348
AspLEI GCGC 1 cut(s) 189
AsuC2I CCSGG 2 cut(s) 124, 222
AsuHPI GGTGA 2 cut(s) 37, 145
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BbsI GAAGAC 1 cut(s) 415
BceAI ACGGC 1 cut(s) 62
BcnI CCSGG 2 cut(s) 124, 222
BcoDI GTCTC 2 cut(s) 284, 410
BfuAI ACCTGC 1 cut(s) 13
BglII AGATCT 1 cut(s) 393
BisI GCNGC 3 cut(s) 48, 175, 435
BlsI GCNGC 3 cut(s) 49, 176, 436
Bme1390I CCNGG 2 cut(s) 124, 222
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 2 cut(s) 124, 222
BpiI GAAGAC 1 cut(s) 415
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpuMI CCSGG 2 cut(s) 124, 222
BsaJI CCNNGG 2 cut(s) 123, 220
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 349
BseDI CCNNGG 2 cut(s) 123, 220
BseLI CCNNNNNNNGG 1 cut(s) 410
BseNI ACTGG 1 cut(s) 349
BseX3I CGGCCG 1 cut(s) 48
BseYI CCCAGC 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 50, 77
BsiEI CGRYCG 1 cut(s) 51
BsiSI CCGG 3 cut(s) 51, 123, 222
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 2 cut(s) 284, 410
BsmBI CGTCTC 1 cut(s) 410
BsnI GGCC 2 cut(s) 50, 77
Bsp143I GATC 3 cut(s) 157, 208, 393
BspACI CCGC 4 cut(s) 5, 47, 120, 175
BspANI GGCC 2 cut(s) 50, 77
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 2 cut(s) 152, 203
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 2 cut(s) 123, 220
BssMI GATC 3 cut(s) 157, 208, 393
Bst4CI ACNGT 2 cut(s) 333, 421
Bst6I CTCTTC 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 405
BstENI CCTNNNNNAGG 1 cut(s) 408
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 3 cut(s) 160, 211, 396
BstMAI GTCTC 2 cut(s) 284, 410
BstMBI GATC 3 cut(s) 157, 208, 393
BstMCI CGRYCG 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 122, 220
BstUI CGCG 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 393
BstYI RGATCY 1 cut(s) 393
BstZI CGGCCG 1 cut(s) 48
BsuRI GGCC 2 cut(s) 50, 77
BtsIMutI CAGTG 1 cut(s) 329
BveI ACCTGC 1 cut(s) 13
CfoI GCGC 1 cut(s) 189
CviAII CATG 3 cut(s) 73, 166, 178
CviJI RGCY 6 cut(s) 50, 77, 106, 117, 174, 264
CviKI_1 RGCY 6 cut(s) 50, 77, 106, 117, 174, 264
DdeI CTNAG 1 cut(s) 405
DpnI GATC 3 cut(s) 159, 210, 395
DpnII GATC 3 cut(s) 157, 208, 393
DrdI GACNNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 77
EaeI YGGCCR 2 cut(s) 48, 75
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EciI GGCGGA 2 cut(s) 20, 109
EclXI CGGCCG 1 cut(s) 48
Eco52I CGGCCG 1 cut(s) 48
Eco57I CTGAAG 2 cut(s) 53, 122
EcoNI CCTNNNNNAGG 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 410
FaeI CATG 3 cut(s) 76, 169, 181
FatI CATG 3 cut(s) 72, 165, 177
Fnu4HI GCNGC 3 cut(s) 48, 175, 435
Fsp4HI GCNGC 3 cut(s) 48, 175, 435
GlaI GCGC 1 cut(s) 188
GluI GCNGC 3 cut(s) 48, 175, 435
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 2 cut(s) 50, 77
HapII CCGG 3 cut(s) 51, 123, 222
HhaI GCGC 1 cut(s) 189
Hin1II CATG 3 cut(s) 76, 169, 181
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 4 cut(s) 54, 65, 191, 310
HpaII CCGG 3 cut(s) 51, 123, 222
HphI GGTGA 2 cut(s) 37, 145
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 110
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 28, 107, 223
HpyCH4III ACNGT 2 cut(s) 333, 421
HpyF3I CTNAG 1 cut(s) 405
Hsp92II CATG 3 cut(s) 76, 169, 181
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 3 cut(s) 157, 208, 393
LmnI GCTCC 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 82
MalI GATC 3 cut(s) 159, 210, 395
MboI GATC 3 cut(s) 157, 208, 393
MboII GAAGA 4 cut(s) 25, 148, 281, 415
MflI RGATCY 1 cut(s) 393
MluCI AATT 1 cut(s) 348
MlyI GAGTC 2 cut(s) 48, 185
MnlI CCTC 1 cut(s) 152
MseI TTAA 2 cut(s) 231, 306
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 3 cut(s) 51, 123, 222
MspR9I CCNGG 2 cut(s) 124, 222
MvnI CGCG 1 cut(s) 189
NciI CCSGG 2 cut(s) 124, 222
NdeII GATC 3 cut(s) 157, 208, 393
NlaIII CATG 3 cut(s) 76, 169, 181
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 82
OliI CACNNNNGTG 1 cut(s) 323
PaqCI CACCTGC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 65, 310
PkrI GCNGC 3 cut(s) 49, 176, 436
PleI GAGTC 2 cut(s) 48, 185
PpsI GAGTC 2 cut(s) 48, 185
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 118
PsuI RGATCY 1 cut(s) 393
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 2 cut(s) 231, 306
SatI GCNGC 3 cut(s) 48, 175, 435
Sau3AI GATC 3 cut(s) 157, 208, 393
SchI GAGTC 2 cut(s) 48, 185
ScrFI CCNGG 2 cut(s) 124, 222
SetI ASST 3 cut(s) 27, 108, 144
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 1 cut(s) 348
SsiI CCGC 4 cut(s) 5, 47, 120, 175
StyD4I CCNGG 2 cut(s) 122, 220
TaaI ACNGT 2 cut(s) 333, 421
TaqI TCGA 1 cut(s) 207
TasI AATT 1 cut(s) 348
TauI GCSGC 2 cut(s) 50, 177
TfiI GAWTC 2 cut(s) 65, 310
Tru1I TTAA 2 cut(s) 231, 306
Tru9I TTAA 2 cut(s) 231, 306
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 1 cut(s) 336
XagI CCTNNNNNAGG 1 cut(s) 408
XapI RAATTY 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.