Rh2DG004400

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000196
Physical Location & Seq
Forward (+)
285741 .. 287695
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG004400.1

Sequence Viewer

Length: 498 bp
ATGGCGACTCCCTCTGAAGTGATCAGCAACAAGCAGGTTGATTTGCTGAAGAACAAGTTTGGGTTTGACGAGGCTTTCAATTATAAAGAAGAATCTAACTTGGATGCAGCTTTGAAAAGGTACTTTCCTGAAGGTATCGATATATACTTTGAGAATGTTGGGGGAAAGATGCTTGATGCAGTGCTACTAAACATGAGGTTCCGTGGCCGAATTGCAGTTTGCGGGATGATCTCACAGTACAACCTTGAGAAGCCTGAAGGTGTACATAACTTAATGTCTCTGATCTCCAAAGAGGTCCGGATGCAAGGTTTTGTTGCTTTTAATTACTATCATCTGTATGGCAAGTTTCTTGAAATGGTCCTGCCTCACATAAAAGAAGGGAAGGTTATGTACGTGGAAGATGTAGTTGAAGGCCTTGAGAGCGCTCCCTCGGCTCTGGTTGGACTCTTTGCAGGTCGCAATGTAGGAAAGCAAGTTGTTGTTGTCTCCCGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

165

Amino Acids

18.64

Weight (kDa)

5.97

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 9 - 117 4.5e-15 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 21 - 160 2.3e-08 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
Acc36I ACCTGC 2 cut(s) 25, 443
AccIII TCCGGA 1 cut(s) 297
AciI CCGC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 205
AcuI CTGAAG 4 cut(s) 36, 68, 150, 276
AfaI GTAC 4 cut(s) 122, 239, 264, 392
AfeI AGCGCT 1 cut(s) 424
AgsI TTSAA 4 cut(s) 79, 115, 353, 410
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 2 cut(s) 282, 490
Ama87I CYCGRG 1 cut(s) 489
Aor13HI TCCGGA 1 cut(s) 297
Aor51HI AGCGCT 1 cut(s) 424
AoxI GGCC 2 cut(s) 205, 412
ApeKI GCWGC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 425
AspS9I GGNCC 2 cut(s) 295, 358
AsuC2I CCSGG 2 cut(s) 490, 491
AvaI CYCGRG 1 cut(s) 489
AvaII GGWCC 2 cut(s) 295, 358
BarI GAAGNNNNNNTAC 2 cut(s) 374, 406
BbvI GCAGC 1 cut(s) 119
BclI TGATCA 1 cut(s) 21
BcnI CCSGG 2 cut(s) 490, 491
BcoDI GTCTC 2 cut(s) 282, 490
BfoI RGCGCY 1 cut(s) 426
BfuAI ACCTGC 2 cut(s) 25, 443
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 2 cut(s) 490, 491
Bme18I GGWCC 2 cut(s) 295, 358
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 295, 358
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 490, 491
BmsI GCATC 4 cut(s) 94, 159, 166, 291
BpuEI CTTGAG 2 cut(s) 266, 437
BpuMI CCSGG 2 cut(s) 490, 491
Bsa29I ATCGAT 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 394
BsaJI CCNNGG 3 cut(s) 202, 429, 489
BsaWI WCCGGW 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 466
BseAI TCCGGA 1 cut(s) 297
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 202, 429, 489
BseGI GGATG 3 cut(s) 109, 231, 306
BseMI GCAATG 1 cut(s) 466
BseXI GCAGC 1 cut(s) 119
BshFI GGCC 2 cut(s) 207, 414
BshVI ATCGAT 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 489
BsiSI CCGG 2 cut(s) 298, 490
BsmAI GTCTC 2 cut(s) 282, 490
BsnI GGCC 2 cut(s) 207, 414
BsoBI CYCGRG 1 cut(s) 489
Bsp13I TCCGGA 1 cut(s) 297
Bsp1407I TGTACA 1 cut(s) 262
Bsp143I GATC 3 cut(s) 21, 228, 282
BspACI CCGC 1 cut(s) 222
BspANI GGCC 2 cut(s) 207, 414
BspDI ATCGAT 1 cut(s) 138
BspEI TCCGGA 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 200
BspMI ACCTGC 2 cut(s) 25, 443
BsrDI GCAATG 1 cut(s) 466
BsrGI TGTACA 1 cut(s) 262
BssECI CCNNGG 3 cut(s) 202, 429, 489
BssMI GATC 3 cut(s) 21, 228, 282
Bst4CI ACNGT 1 cut(s) 237
BstAUI TGTACA 1 cut(s) 262
BstBAI YACGTR 1 cut(s) 394
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 3 cut(s) 109, 231, 306
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 3 cut(s) 24, 231, 285
BstMAI GTCTC 2 cut(s) 282, 490
BstMBI GATC 3 cut(s) 21, 228, 282
BstMWI GCNNNNNNNGC 2 cut(s) 420, 431
BstSCI CCNGG 2 cut(s) 488, 489
BstV1I GCAGC 1 cut(s) 119
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 2 cut(s) 207, 414
BsuTUI ATCGAT 1 cut(s) 138
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 3 cut(s) 109, 231, 306
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 2 cut(s) 25, 443
CfoI GCGC 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 295, 358
Cfr9I CCCGGG 1 cut(s) 489
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 4 cut(s) 121, 238, 263, 391
CviAII CATG 1 cut(s) 193
CviJI RGCY 6 cut(s) 74, 110, 207, 253, 414, 434
CviKI_1 RGCY 6 cut(s) 74, 110, 207, 253, 414, 434
CviQI GTAC 4 cut(s) 121, 238, 263, 391
DpnI GATC 3 cut(s) 23, 230, 284
DpnII GATC 3 cut(s) 21, 228, 282
EaeI YGGCCR 1 cut(s) 205
Eco147I AGGCCT 1 cut(s) 414
Eco47I GGWCC 2 cut(s) 295, 358
Eco47III AGCGCT 1 cut(s) 424
Eco57I CTGAAG 4 cut(s) 36, 68, 150, 276
Eco88I CYCGRG 1 cut(s) 489
FaeI CATG 1 cut(s) 196
FaiI YATR 8 cut(s) 84, 143, 145, 194, 267, 339, 371, 389
FatI CATG 1 cut(s) 192
FauI CCCGC 1 cut(s) 215
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 3 cut(s) 116, 238, 313
Fsp4HI GCNGC 1 cut(s) 108
GlaI GCGC 1 cut(s) 424
GluI GCNGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 426
HaeIII GGCC 2 cut(s) 207, 414
HapII CCGG 2 cut(s) 298, 490
HhaI GCGC 1 cut(s) 425
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HinfI GANTC 3 cut(s) 7, 92, 444
HpaII CCGG 2 cut(s) 298, 490
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 2 cut(s) 16, 282
Hpy188III TCNNGA 3 cut(s) 128, 298, 350
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 5 cut(s) 125, 251, 371, 376, 404
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 5 cut(s) 107, 179, 215, 304, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 420, 431
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 423
Kpn2I TCCGGA 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 3 cut(s) 21, 228, 282
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 7 cut(s) 20, 141, 267, 311, 374, 422, 438
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 4 cut(s) 94, 159, 166, 291
MaeII ACGT 1 cut(s) 393
MalI GATC 3 cut(s) 23, 230, 284
MboI GATC 3 cut(s) 21, 228, 282
MboII GAAGA 3 cut(s) 61, 101, 410
MluCI AATT 3 cut(s) 79, 210, 322
MlyI GAGTC 1 cut(s) 438
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 6 cut(s) 22, 64, 189, 286, 375, 439
MroI TCCGGA 1 cut(s) 297
MseI TTAA 2 cut(s) 272, 321
MslI CAYNNNNRTG 1 cut(s) 336
MspI CCGG 2 cut(s) 298, 490
MspR9I CCNGG 2 cut(s) 490, 491
MwoI GCNNNNNNNGC 2 cut(s) 420, 431
NciI CCSGG 2 cut(s) 490, 491
NdeII GATC 3 cut(s) 21, 228, 282
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 200
NmeAIII GCCGAG 1 cut(s) 410
PceI AGGCCT 1 cut(s) 414
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 438
Ppu21I YACGTR 1 cut(s) 394
PsiI TTATAA 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 2 cut(s) 295, 358
RsaI GTAC 4 cut(s) 122, 239, 264, 392
RsaNI GTAC 4 cut(s) 121, 238, 263, 391
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 2 cut(s) 272, 321
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 3 cut(s) 21, 228, 282
Sau96I GGNCC 2 cut(s) 295, 358
SchI GAGTC 1 cut(s) 438
ScrFI CCNGG 2 cut(s) 490, 491
SfaNI GCATC 4 cut(s) 94, 159, 166, 291
SinI GGWCC 2 cut(s) 295, 358
SmaI CCCGGG 1 cut(s) 491
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 2 cut(s) 245, 416
SmoI CTYRAG 2 cut(s) 245, 416
Sse9I AATT 3 cut(s) 79, 210, 322
SseBI AGGCCT 1 cut(s) 414
SsiI CCGC 1 cut(s) 222
StuI AGGCCT 1 cut(s) 414
StyD4I CCNGG 2 cut(s) 488, 489
TaaI ACNGT 1 cut(s) 237
TaiI ACGT 1 cut(s) 396
TaqI TCGA 1 cut(s) 138
TasI AATT 3 cut(s) 79, 210, 322
TatI WGTACW 2 cut(s) 237, 262
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 272, 321
Tru9I TTAA 2 cut(s) 272, 321
TscAI CASTG 1 cut(s) 186
TseI GCWGC 1 cut(s) 107
TspGWI ACGGA 1 cut(s) 191
TspMI CCCGGG 1 cut(s) 489
TspRI CASTG 1 cut(s) 186
VpaK11BI GGWCC 2 cut(s) 295, 358
XmaI CCCGGG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.