Rmu_sc0020031.1_g000004

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020031.1
OG0000196
Physical Location & Seq
Forward (+)
18745 .. 19014
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020031.1_g000004.1.cds

Sequence Viewer

Length: 270 bp
atgaacctggactatctttcttggttatcagggatcaccaatttgatgcacctcatttacaagcgcattcgcatggaaggcttcttcgtgtttgatttctaccacctctaccccaagttcttggacctggtggtgccttacatcaaggaagggaagatcacctatgtggaggacatagttgaaggacttgagaatggtcctgcttctctagtacgcattttcagtggtcgcaatgctggaaaaggagtcgttgcagttgctcgcgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

89

Amino Acids

10.25

Weight (kDa)

6.73

Isoelectric Point (pI)

26.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AccII CGCG 1 cut(s) 264
AclWI GGATC 1 cut(s) 41
AfaI GTAC 1 cut(s) 213
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 2 cut(s) 6, 126
AleI CACNNNNGTG 1 cut(s) 164
AlwI GGATC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 124, 197
AsuHPI GGTGA 2 cut(s) 28, 151
AvaII GGWCC 2 cut(s) 124, 197
BanI GGYRCC 1 cut(s) 133
BciT130I CCWGG 2 cut(s) 8, 128
BfaI CTAG 1 cut(s) 209
Bme1390I CCNGG 2 cut(s) 8, 128
Bme18I GGWCC 2 cut(s) 124, 197
BmgT120I GGNCC 2 cut(s) 124, 197
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 8, 128
BmsI GCATC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 238
BseBI CCWGG 2 cut(s) 8, 128
BseMI GCAATG 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 33, 156
Bsp68I TCGCGA 1 cut(s) 264
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 238
BssMI GATC 2 cut(s) 33, 156
Bst2UI CCWGG 2 cut(s) 8, 128
BstC8I GCNNGC 1 cut(s) 262
BstFNI CGCG 1 cut(s) 264
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 36, 159
BstMBI GATC 2 cut(s) 33, 156
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 2 cut(s) 8, 128
BstSCI CCNGG 2 cut(s) 6, 126
BstUI CGCG 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 229
BtuMI TCGCGA 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 262
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 124, 197
CsiI ACCWGGT 1 cut(s) 126
Csp6I GTAC 1 cut(s) 212
CviAII CATG 1 cut(s) 73
CviJI RGCY 1 cut(s) 81
CviKI_1 RGCY 1 cut(s) 81
CviQI GTAC 1 cut(s) 212
DpnI GATC 2 cut(s) 35, 158
DpnII GATC 2 cut(s) 33, 156
Eco47I GGWCC 2 cut(s) 124, 197
EcoRII CCWGG 2 cut(s) 6, 126
FaeI CATG 1 cut(s) 76
FaiI YATR 3 cut(s) 74, 165, 176
FatI CATG 1 cut(s) 72
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 1 cut(s) 246
HphI GGTGA 2 cut(s) 28, 151
Hpy188III TCNNGA 1 cut(s) 263
HpyAV CCTTC 3 cut(s) 71, 143, 176
HpyCH4V TGCA 2 cut(s) 49, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 64
Kzo9I GATC 2 cut(s) 33, 156
LpnPI CCDG 6 cut(s) 15, 20, 113, 140, 213, 222
LweI GCATC 1 cut(s) 36
MabI ACCWGGT 1 cut(s) 126
MaeI CTAG 1 cut(s) 209
MalI GATC 2 cut(s) 35, 158
MboI GATC 2 cut(s) 33, 156
MboII GAAGA 2 cut(s) 76, 166
MluCI AATT 1 cut(s) 40
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 3 cut(s) 62, 116, 163
MslI CAYNNNNRTG 2 cut(s) 71, 164
MspR9I CCNGG 2 cut(s) 8, 128
Mva1269I GAATGC 1 cut(s) 66
MvaI CCWGG 2 cut(s) 8, 128
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeII GATC 2 cut(s) 33, 156
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 135
NruI TCGCGA 1 cut(s) 264
OliI CACNNNNGTG 1 cut(s) 164
PctI GAATGC 1 cut(s) 66
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 6, 126
PspGI CCWGG 2 cut(s) 6, 126
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 124, 197
RruI TCGCGA 1 cut(s) 264
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
RseI CAYNNNNRTG 2 cut(s) 71, 164
Sau3AI GATC 2 cut(s) 33, 156
Sau96I GGNCC 2 cut(s) 124, 197
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 8, 128
SetI ASST 5 cut(s) 9, 54, 108, 129, 164
SexAI ACCWGGT 1 cut(s) 126
SfaNI GCATC 1 cut(s) 36
SinI GGWCC 2 cut(s) 124, 197
SmiMI CAYNNNNRTG 2 cut(s) 71, 164
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 40
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 6, 126
TasI AATT 1 cut(s) 40
TscAI CASTG 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 2 cut(s) 124, 197
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.