RchiOBHm_Chr2g0117721

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000196
Physical Location & Seq
Forward (+)
29964443 .. 29966580
2138 bp
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UTR
Exon/CDS
Intron
PRQ49060

Sequence Viewer

Length: 696 bp
ATGGCTCTATTTTTTCTTGCTGAAAATGGTGCTAGCTTAGGTATCTCATCTGGTATTGTGGAAGCTGTATATATCACCGGCTTCCCCAAAGAATCCGACCTCAAATTGACCACTGCCACTACCAAACTCAAGCTTCCAGAAGGTTTGACTGGCCTCCTCGTCAAGAACCTCTACTTGTCCTGCGATCCTTACATGCGAAGCCGTATGACCAAGCAGAAGGAAGGGGGTGAGGAGGGGGGCTATATATTGCTGTTATTTGTTTATAATATTGCTCAAGGATTGTTGCATTGTCCTGTAATTGGTTTGGGAGTGGCTAAAGTCTTGGAATCTGGGGATCCAAAGTTTAAGCCAGGGGACTTGGTTTGGGGTCACACTGGTTGGGAAGAATATAGTGTCATCACCACAGAGTCTCTGATTAAGATTCACCACACTGATGTGCCTCTCTCTTACTATACTGGACTTCTCGGTATGCCTGGAGTGACTGCTTATGCTGGATTTTATGAGATCTGGTCTCCTAAGAAAGGAGAGACAGTCTACATTTCAGCCGCATCTGGAGCGGTAGGTCAGCTTGTTGGCCAATTTGCAAAGTTAACAGGTTGTTATGTTGTTGGGAGTGCTGGAAGCAAGGAAAAGGTGAGTCACTGGTACTCCACAAGACGTGCATATATACAGACTAAAACTTTATTCTTTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

231

Amino Acids

25.05

Weight (kDa)

8.29

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 25 - 74 1.4e-08 N-terminal domain of oxidoreductase
ADH_N_2 PF16884 98 - 141 1.4e-09 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccBSI CCGCTC 1 cut(s) 557
AccI GTMKAC 1 cut(s) 534
AciI CCGC 2 cut(s) 546, 557
AclWI GGATC 3 cut(s) 179, 329, 342
AcoI YGGCCR 1 cut(s) 574
AfaI GTAC 1 cut(s) 647
AfiI CCNNNNNNNGG 2 cut(s) 299, 521
AjiI CACGTC 1 cut(s) 659
AjnI CCWGG 2 cut(s) 349, 472
AleI CACNNNNGTG 1 cut(s) 434
AluBI AGCT 4 cut(s) 36, 65, 133, 568
AluI AGCT 4 cut(s) 36, 65, 133, 568
Alw26I GTCTC 3 cut(s) 414, 516, 521
AlwI GGATC 3 cut(s) 179, 329, 342
AoxI GGCC 2 cut(s) 151, 574
AsuHPI GGTGA 5 cut(s) 67, 239, 391, 416, 646
AsuNHI GCTAGC 1 cut(s) 32
BalI TGGCCA 1 cut(s) 576
BamHI GGATCC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 2 cut(s) 351, 474
BcoDI GTCTC 3 cut(s) 414, 516, 521
BfaI CTAG 1 cut(s) 33
BglII AGATCT 1 cut(s) 504
BisI GCNGC 1 cut(s) 546
BlsI GCNGC 1 cut(s) 547
Bme1390I CCNGG 2 cut(s) 351, 474
BmgBI CACGTC 1 cut(s) 659
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 351, 474
BmsI GCATC 1 cut(s) 557
BmtI GCTAGC 1 cut(s) 36
BpmI CTGGAG 2 cut(s) 495, 573
Bpu10I CCTNAGC 1 cut(s) 37
BpuEI CTTGAG 2 cut(s) 113, 258
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 350
BsaXI ACNNNNNCTCC 4 cut(s) 516, 546, 632, 662
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 521
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 4 cut(s) 154, 379, 460, 647
BseBI CCWGG 2 cut(s) 351, 474
BseDI CCNNGG 1 cut(s) 350
BseLI CCNNNNNNNGG 2 cut(s) 299, 521
BseNI ACTGG 4 cut(s) 154, 379, 460, 647
BseRI GAGGAG 2 cut(s) 146, 245
BshFI GGCC 2 cut(s) 153, 576
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 2 cut(s) 299, 521
BsmAI GTCTC 3 cut(s) 414, 516, 521
BsmFI GGGAC 1 cut(s) 368
BsnI GGCC 2 cut(s) 153, 576
Bso31I GGTCTC 1 cut(s) 516
Bsp143I GATC 3 cut(s) 184, 334, 504
BspACI CCGC 2 cut(s) 546, 557
BspANI GGCC 2 cut(s) 153, 576
BspLI GGNNCC 1 cut(s) 336
BspOI GCTAGC 1 cut(s) 36
BspPI GGATC 3 cut(s) 179, 329, 342
BspTNI GGTCTC 1 cut(s) 516
BsrBI CCGCTC 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 4 cut(s) 154, 379, 460, 647
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 3 cut(s) 184, 334, 504
Bst2UI CCWGG 2 cut(s) 351, 474
Bst4CI ACNGT 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 2 cut(s) 37, 516
BstENI CCTNNNNNAGG 1 cut(s) 519
BstKTI GATC 3 cut(s) 187, 337, 507
BstMAI GTCTC 3 cut(s) 414, 516, 521
BstMBI GATC 3 cut(s) 184, 334, 504
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNI CCWGG 2 cut(s) 351, 474
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 349, 472
BstX2I RGATCY 2 cut(s) 334, 504
BstYI RGATCY 2 cut(s) 334, 504
BsuRI GGCC 2 cut(s) 153, 576
BtrI CACGTC 1 cut(s) 659
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 4 cut(s) 111, 372, 429, 640
Cac8I GCNNGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 77
Csp6I GTAC 1 cut(s) 646
CviAII CATG 1 cut(s) 193
CviQI GTAC 1 cut(s) 646
DdeI CTNAG 2 cut(s) 37, 516
DpnI GATC 3 cut(s) 186, 336, 506
DpnII GATC 3 cut(s) 184, 334, 504
EaeI YGGCCR 1 cut(s) 574
Eco31I GGTCTC 1 cut(s) 516
EcoNI CCTNNNNNAGG 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 349, 472
FaeI CATG 1 cut(s) 196
FaqI GGGAC 1 cut(s) 368
FatI CATG 1 cut(s) 192
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 1 cut(s) 546
Fsp4HI GCNGC 1 cut(s) 546
FspBI CTAG 1 cut(s) 33
GluI GCNGC 1 cut(s) 546
GsuI CTGGAG 2 cut(s) 495, 573
HaeIII GGCC 2 cut(s) 153, 576
HapII CCGG 1 cut(s) 78
Hin1II CATG 1 cut(s) 196
HincII GTYRAC 1 cut(s) 591
HindII GTYRAC 1 cut(s) 591
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 5 cut(s) 92, 326, 407, 421, 637
HpaI GTTAAC 1 cut(s) 591
HpaII CCGG 1 cut(s) 78
HphI GGTGA 5 cut(s) 67, 239, 391, 416, 646
Hpy166II GTNNAC 2 cut(s) 535, 591
Hpy188I TCNGA 2 cut(s) 97, 414
Hpy188III TCNNGA 3 cut(s) 137, 163, 552
Hpy8I GTNNAC 2 cut(s) 535, 591
HpyAV CCTTC 3 cut(s) 134, 211, 215
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4IV ACGT 1 cut(s) 658
HpyCH4V TGCA 3 cut(s) 286, 584, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 2 cut(s) 37, 516
HpySE526I ACGT 1 cut(s) 658
Hsp92II CATG 1 cut(s) 196
KspAI GTTAAC 1 cut(s) 591
Kzo9I GATC 3 cut(s) 184, 334, 504
LmnI GCTCC 1 cut(s) 554
LweI GCATC 1 cut(s) 557
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 658
MaeIII GTNAC 3 cut(s) 368, 478, 638
MalI GATC 3 cut(s) 186, 336, 506
MbiI CCGCTC 1 cut(s) 557
MboI GATC 3 cut(s) 184, 334, 504
MboII GAAGA 1 cut(s) 395
MflI RGATCY 2 cut(s) 334, 504
MlsI TGGCCA 1 cut(s) 576
MluCI AATT 3 cut(s) 104, 297, 578
MluNI TGGCCA 1 cut(s) 576
MlyI GAGTC 2 cut(s) 416, 646
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 7 cut(s) 110, 164, 167, 179, 223, 226, 450
Mox20I TGGCCA 1 cut(s) 576
MscI TGGCCA 1 cut(s) 576
MseI TTAA 3 cut(s) 345, 417, 590
MslI CAYNNNNRTG 2 cut(s) 432, 434
Msp20I TGGCCA 1 cut(s) 576
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 351, 474
MvaI CCWGG 2 cut(s) 351, 474
MwoI GCNNNNNNNGC 1 cut(s) 554
NdeII GATC 3 cut(s) 184, 334, 504
NheI GCTAGC 1 cut(s) 32
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 3 cut(s) 368, 478, 638
NspI RCATGY 1 cut(s) 196
OliI CACNNNNGTG 1 cut(s) 434
PfeI GAWTC 3 cut(s) 92, 326, 421
PkrI GCNGC 1 cut(s) 547
PleI GAGTC 2 cut(s) 415, 645
PpsI GAGTC 2 cut(s) 415, 645
PsiI TTATAA 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 349, 472
PspGI CCWGG 2 cut(s) 349, 472
PspN4I GGNNCC 1 cut(s) 336
PsuI RGATCY 2 cut(s) 334, 504
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
RseI CAYNNNNRTG 2 cut(s) 432, 434
SaqAI TTAA 3 cut(s) 345, 417, 590
SatI GCNGC 1 cut(s) 546
Sau3AI GATC 3 cut(s) 184, 334, 504
SchI GAGTC 2 cut(s) 416, 646
ScrFI CCNGG 2 cut(s) 351, 474
SfaNI GCATC 1 cut(s) 557
SmiMI CAYNNNNRTG 2 cut(s) 432, 434
SmlI CTYRAG 2 cut(s) 128, 273
SmoI CTYRAG 2 cut(s) 128, 273
Sse9I AATT 3 cut(s) 104, 297, 578
SsiI CCGC 2 cut(s) 546, 557
SspI AATATT 1 cut(s) 268
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 349, 472
TaaI ACNGT 1 cut(s) 532
TaiI ACGT 1 cut(s) 661
TasI AATT 3 cut(s) 104, 297, 578
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 3 cut(s) 92, 326, 421
Tru1I TTAA 3 cut(s) 345, 417, 590
Tru9I TTAA 3 cut(s) 345, 417, 590
TscAI CASTG 4 cut(s) 118, 379, 436, 647
TseFI GTSAC 3 cut(s) 368, 478, 638
Tsp45I GTSAC 3 cut(s) 368, 478, 638
TspRI CASTG 4 cut(s) 118, 379, 436, 647
XagI CCTNNNNNAGG 1 cut(s) 519
XceI RCATGY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 534
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.