Rh2DG009800

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000196
Physical Location & Seq
Reverse (-)
577197 .. 583248
6052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG009800.1

Sequence Viewer

Length: 405 bp
ATGTCGATCCCTTCAACCCCGGCGAGGTACTTTCCAGATGGTATTGACATTTACTTTGAAAATGTGGGCGGAAAGATGCTTGATGCAGTACTACCAAACATGAGGCTGAAAGGGCGAATAGCTGTGTGTGGGATGATCTCACAGTACAACCTCGAGAGGCCTGAAGGCATACATAATTTGATGTCTCTGATTGTTAAGCAGGTCCGAATGGAAGGTTTCCTGGTCTTCAGTTACTATCATCTGTATGGAAAGTTTCTTGAAACAGTGTTGCCTTACATAAAAGAAGGGAAGATAACATATGTGGAAGATGTAGTTGAAGGCCTTGAGAATGCTCCAGCGGCTCTAATTGGGCTCTTTTCTGGCCGCAATGTGGGAAAGCAGGTGGTTGTAGTTTCCAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

134

Amino Acids

15.03

Weight (kDa)

6.74

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N_2 PF13602 12 - 129 4e-08 Zinc-binding dehydrogenase
ADH_zinc_N PF00107 12 - 82 2.9e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 370
Acc36I ACCTGC 2 cut(s) 190, 370
AciI CCGC 3 cut(s) 69, 338, 364
AcoI YGGCCR 1 cut(s) 361
AcuI CTGAAG 2 cut(s) 183, 211
AfaI GTAC 3 cut(s) 29, 90, 146
AfiI CCNNNNNNNGG 2 cut(s) 24, 370
AgsI TTSAA 4 cut(s) 15, 59, 260, 317
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 3 cut(s) 158, 319, 361
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 217
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 189
BfuAI ACCTGC 2 cut(s) 190, 370
BisI GCNGC 2 cut(s) 339, 364
BlsI GCNGC 2 cut(s) 340, 365
BmcAI AGTACT 1 cut(s) 90
Bme1390I CCNGG 2 cut(s) 20, 221
Bme18I GGWCC 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 202
BmrFI CCNGG 2 cut(s) 20, 221
BmsI GCATC 2 cut(s) 66, 73
BpiI GAAGAC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 370
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 24, 370
BseMI GCAATG 1 cut(s) 373
BshFI GGCC 3 cut(s) 160, 321, 363
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 24, 370
BsmAI GTCTC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 3 cut(s) 160, 321, 363
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 2 cut(s) 6, 135
BspACI CCGC 3 cut(s) 69, 338, 364
BspANI GGCC 3 cut(s) 160, 321, 363
BspMI ACCTGC 2 cut(s) 190, 370
BsrDI GCAATG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 6, 135
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 144, 265
BstF5I GGATG 1 cut(s) 138
BstKTI GATC 2 cut(s) 9, 138
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 2 cut(s) 6, 135
BstMWI GCNNNNNNNGC 2 cut(s) 112, 338
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 18, 219
BstV2I GAAGAC 1 cut(s) 217
BsuRI GGCC 3 cut(s) 160, 321, 363
BtsCI GGATG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 270
BveI ACCTGC 2 cut(s) 190, 370
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 3 cut(s) 28, 89, 145
CviAII CATG 1 cut(s) 100
CviJI RGCY 7 cut(s) 106, 122, 160, 321, 341, 352, 363
CviKI_1 RGCY 7 cut(s) 106, 122, 160, 321, 341, 352, 363
CviQI GTAC 3 cut(s) 28, 89, 145
DpnI GATC 2 cut(s) 8, 137
DpnII GATC 2 cut(s) 6, 135
EaeI YGGCCR 1 cut(s) 361
EciI GGCGGA 1 cut(s) 84
Eco147I AGGCCT 2 cut(s) 160, 321
Eco24I GRGCYC 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 183, 211
Eco88I CYCGRG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 354
FaeI CATG 1 cut(s) 103
FaiI YATR 7 cut(s) 101, 170, 174, 246, 278, 298, 300
FatI CATG 1 cut(s) 99
FauNDI CATATG 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 339, 364
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 2 cut(s) 339, 364
GluI GCNGC 2 cut(s) 339, 364
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 3 cut(s) 160, 321, 363
HapII CCGG 1 cut(s) 20
Hin1II CATG 1 cut(s) 103
HpaII CCGG 1 cut(s) 20
Hpy188I TCNGA 2 cut(s) 189, 206
Hpy188III TCNNGA 4 cut(s) 35, 154, 257, 396
HpyAV CCTTC 5 cut(s) 21, 158, 206, 278, 311
HpyCH4III ACNGT 2 cut(s) 144, 265
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 338
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 2 cut(s) 6, 135
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 9 cut(s) 33, 48, 174, 185, 206, 233, 345, 348, 365
LweI GCATC 2 cut(s) 66, 73
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 8, 137
MboI GATC 2 cut(s) 6, 135
MboII GAAGA 3 cut(s) 217, 301, 317
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 2 cut(s) 175, 345
MnlI CCTC 4 cut(s) 18, 96, 150, 161
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 20, 221
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 112, 338
NciI CCSGG 1 cut(s) 20
NdeI CATATG 1 cut(s) 298
NdeII GATC 2 cut(s) 6, 135
NlaIII CATG 1 cut(s) 103
PaeR7I CTCGAG 1 cut(s) 152
PaqCI CACCTGC 1 cut(s) 370
PceI AGGCCT 2 cut(s) 160, 321
PctI GAATGC 1 cut(s) 334
PkrI GCNGC 2 cut(s) 340, 365
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspPI GGNCC 1 cut(s) 202
RsaI GTAC 3 cut(s) 29, 90, 146
RsaNI GTAC 3 cut(s) 28, 89, 145
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 339, 364
Sau3AI GATC 2 cut(s) 6, 135
Sau96I GGNCC 1 cut(s) 202
ScaI AGTACT 1 cut(s) 90
ScrFI CCNGG 2 cut(s) 20, 221
SduI GDGCHC 1 cut(s) 354
SetI ASST 6 cut(s) 29, 124, 153, 204, 217, 384
SfaNI GCATC 2 cut(s) 66, 73
Sfr274I CTCGAG 1 cut(s) 152
SinI GGWCC 1 cut(s) 202
SlaI CTCGAG 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 2 cut(s) 152, 323
SmoI CTYRAG 2 cut(s) 152, 323
Sse9I AATT 2 cut(s) 175, 345
SseBI AGGCCT 2 cut(s) 160, 321
SsiI CCGC 3 cut(s) 69, 338, 364
StuI AGGCCT 2 cut(s) 160, 321
StyD4I CCNGG 2 cut(s) 18, 219
TaaI ACNGT 2 cut(s) 144, 265
TaqI TCGA 2 cut(s) 5, 153
TasI AATT 2 cut(s) 175, 345
TatI WGTACW 2 cut(s) 88, 144
TauI GCSGC 2 cut(s) 341, 366
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 270
TspRI CASTG 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 152
ZrmI AGTACT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.