Rh2DG004200

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000196
Physical Location & Seq
Forward (+)
274842 .. 277043
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG004200.1

Sequence Viewer

Length: 513 bp
ATGACCAGGCGCGACTCTGCTTCTTATGTCGATCCCTTCAACCCCGGCGAGGTTGATTTGCTGAAAAACAAGTTTGGCTTTGACGGAGCCTTCAATTATAAAGAAGAACCTAACTTGGATGCAGCTTTGAAAAGGTACTTTCCTGAAGGAATTGATATATACTTTGAAAATGTTGGGGGAAAGATGCTTGATGCAGTGCTACTGAACATGAAGATTGGTGGCCGAATCTCAGTTTGTGGGATGATCTCACAGTACAACCTTGTGCAACCTGAAGGTGTACAGAATTTAATGTATCTGGTGTCTAAACAGCTGCGCATGGAAGGCTTCCAGGTTACTAAATACTTTCCTCTCTACGGAAAGTTTCTCGAATTGGTTCTGCCTCACATAAAAGAAGGGAAGATTATCTACGTGGAAGATGTTGTTGAAGGGCTGGAGAATGCTCCATCGGCTCTGCTTGGTCTCTTCGCTGGCCGCAATGTAGGAAAGCAGGTGGTTGTTGTTTCCCGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

170

Amino Acids

19.09

Weight (kDa)

5.56

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 17 - 113 1.8e-12 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 26 - 165 1.1e-06 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AarI CACCTGC 1 cut(s) 478
Acc16I TGCGCA 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 478
AccII CGCG 1 cut(s) 12
AciI CCGC 1 cut(s) 472
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 2 cut(s) 220, 469
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 2 cut(s) 165, 291
AfaI GTAC 3 cut(s) 137, 254, 279
AfiI CCNNNNNNNGG 2 cut(s) 49, 353
AgsI TTSAA 5 cut(s) 40, 94, 130, 167, 425
AjnI CCWGG 2 cut(s) 5, 327
AluBI AGCT 2 cut(s) 125, 310
AluI AGCT 2 cut(s) 125, 310
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 2 cut(s) 220, 469
ApeKI GCWGC 2 cut(s) 122, 310
ApoI RAATTY 1 cut(s) 283
Asp700I GAANNNNTTC 1 cut(s) 372
AspLEI GCGC 2 cut(s) 12, 315
AsuC2I CCSGG 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 504
BarI GAAGNNNNNNTAC 2 cut(s) 389, 421
BbvI GCAGC 2 cut(s) 134, 297
BccI CCATC 1 cut(s) 451
BciT130I CCWGG 2 cut(s) 7, 329
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 464
BfuAI ACCTGC 1 cut(s) 478
BisI GCNGC 3 cut(s) 123, 311, 472
BlsI GCNGC 3 cut(s) 124, 312, 473
Bme1390I CCNGG 3 cut(s) 7, 45, 329
BmeT110I CYCGRG 1 cut(s) 504
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 3 cut(s) 7, 45, 329
BmsI GCATC 3 cut(s) 109, 174, 181
BpmI CTGGAG 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 409
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 353
Bse3DI GCAATG 1 cut(s) 481
BseBI CCWGG 2 cut(s) 7, 329
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 124, 246
BseLI CCNNNNNNNGG 2 cut(s) 49, 353
BseMI GCAATG 1 cut(s) 481
BseMII CTCAG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 134, 297
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 2 cut(s) 222, 471
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 49, 353
BsmAI GTCTC 1 cut(s) 464
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 2 cut(s) 222, 471
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 504
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 2 cut(s) 31, 243
BspACI CCGC 1 cut(s) 472
BspANI GGCC 2 cut(s) 222, 471
BspCNI CTCAG 1 cut(s) 242
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 481
BsrGI TGTACA 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 2 cut(s) 31, 243
Bst2UI CCWGG 2 cut(s) 7, 329
Bst4CI ACNGT 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 467
BstAUI TGTACA 1 cut(s) 277
BstBAI YACGTR 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 1 cut(s) 229
BstF5I GGATG 2 cut(s) 124, 246
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 2 cut(s) 12, 315
BstKTI GATC 2 cut(s) 34, 246
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 2 cut(s) 31, 243
BstMWI GCNNNNNNNGC 2 cut(s) 321, 446
BstNI CCWGG 2 cut(s) 7, 329
BstSCI CCNGG 3 cut(s) 5, 43, 327
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 134, 297
BsuRI GGCC 2 cut(s) 222, 471
BtsCI GGATG 2 cut(s) 124, 246
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 469
CfoI GCGC 2 cut(s) 12, 315
Csp6I GTAC 3 cut(s) 136, 253, 278
CviAII CATG 2 cut(s) 208, 316
CviJI RGCY 9 cut(s) 78, 89, 125, 222, 310, 324, 430, 449, 471
CviKI_1 RGCY 9 cut(s) 78, 89, 125, 222, 310, 324, 430, 449, 471
CviQI GTAC 3 cut(s) 136, 253, 278
DdeI CTNAG 1 cut(s) 229
DpnI GATC 2 cut(s) 33, 245
DpnII GATC 2 cut(s) 31, 243
EaeI YGGCCR 2 cut(s) 220, 469
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Eco31I GGTCTC 1 cut(s) 464
Eco57I CTGAAG 2 cut(s) 165, 291
Eco88I CYCGRG 1 cut(s) 504
EcoRII CCWGG 2 cut(s) 5, 327
FaeI CATG 2 cut(s) 211, 319
FaiI YATR 7 cut(s) 27, 99, 158, 160, 209, 317, 386
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 2 cut(s) 207, 315
Fnu4HI GCNGC 3 cut(s) 123, 311, 472
FokI GGATG 2 cut(s) 131, 253
Fsp4HI GCNGC 3 cut(s) 123, 311, 472
FspI TGCGCA 1 cut(s) 314
GlaI GCGC 2 cut(s) 11, 314
GluI GCNGC 3 cut(s) 123, 311, 472
GsuI CTGGAG 1 cut(s) 452
HaeIII GGCC 2 cut(s) 222, 471
HapII CCGG 1 cut(s) 45
HhaI GCGC 2 cut(s) 12, 315
Hin1II CATG 2 cut(s) 211, 319
Hin6I GCGC 2 cut(s) 10, 313
HinP1I GCGC 2 cut(s) 10, 313
HinfI GANTC 2 cut(s) 14, 225
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 278
Hpy188III TCNNGA 3 cut(s) 143, 365, 504
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 7 cut(s) 46, 100, 140, 266, 314, 386, 419
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 3 cut(s) 122, 194, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 321, 446
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 2 cut(s) 211, 319
HspAI GCGC 2 cut(s) 10, 313
Kzo9I GATC 2 cut(s) 31, 243
LmnI GCTCC 2 cut(s) 86, 445
Lsp1109I GCAGC 2 cut(s) 134, 297
LweI GCATC 3 cut(s) 109, 174, 181
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 331
MalI GATC 2 cut(s) 33, 245
MboI GATC 2 cut(s) 31, 243
MboII GAAGA 5 cut(s) 116, 223, 409, 425, 454
MluCI AATT 4 cut(s) 94, 150, 283, 368
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 3 cut(s) 43, 357, 390
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 310
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 3 cut(s) 7, 45, 329
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 2 cut(s) 7, 329
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 321, 446
NciI CCSGG 1 cut(s) 45
NdeII GATC 2 cut(s) 31, 243
NlaIII CATG 2 cut(s) 211, 319
NlaIV GGNNCC 1 cut(s) 88
NsbI TGCGCA 1 cut(s) 314
PaqCI CACCTGC 1 cut(s) 478
PctI GAATGC 1 cut(s) 442
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 225
PkrI GCNGC 3 cut(s) 124, 312, 473
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 409
PsiI TTATAA 1 cut(s) 99
Psp6I CCWGG 2 cut(s) 5, 327
PspGI CCWGG 2 cut(s) 5, 327
PspN4I GGNNCC 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 3 cut(s) 137, 254, 279
RsaNI GTAC 3 cut(s) 136, 253, 278
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 3 cut(s) 123, 311, 472
Sau3AI GATC 2 cut(s) 31, 243
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 3 cut(s) 7, 45, 329
SfaNI GCATC 3 cut(s) 109, 174, 181
Sse9I AATT 4 cut(s) 94, 150, 283, 368
SsiI CCGC 1 cut(s) 472
StyD4I CCNGG 3 cut(s) 5, 43, 327
TaaI ACNGT 1 cut(s) 252
TaiI ACGT 1 cut(s) 411
TaqI TCGA 2 cut(s) 30, 366
TasI AATT 4 cut(s) 94, 150, 283, 368
TatI WGTACW 2 cut(s) 252, 277
TauI GCSGC 1 cut(s) 474
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 1 cut(s) 201
TseI GCWGC 2 cut(s) 122, 310
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 2 cut(s) 99, 369
TspRI CASTG 1 cut(s) 201
XapI RAATTY 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.