Rroxscaffold_2G00155470

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000196
Physical Location & Seq
Forward (+)
91856042 .. 91856311
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155470.1

Sequence Viewer

Length: 270 bp
ATGGCGAGTGGTGTAGAAAGAGAGCAAGTAGTGAGGAACAAGCAGGTGCTATTCAAAGACTATGTCACCGACTTCCCCAAAGAATCTAACATGCAATTGACCACTAGTACAGCCACACTGAAGCTCCCACAAGGTTCCACTGGCGTTGGCGTTCTGGTCAAGAACCTCTACTTGTCCTGCGATCCTTCTACTAAAGTCCATATGACCAAGGCTAGCTCTGATACTCCTCCTTATATCAAAACCTTCACTCCTGGTTCGGTCAGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

89

Amino Acids

9.72

Weight (kDa)

9.17

Isoelectric Point (pI)

28.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 14 - 78 1.7e-07 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65560
fragaria_vesca FvH4_1g00330 FvH4_1g00342 FvH4_1g00343 FvH4_1g00344 FvH4_1g00345 FvH4_1g00345 FvH4_1g00346 FvH4_1g26520
malus_domestica MD02G1001800.v1.1 MD02G1001900.v1.1 MD02G1002100.v1.1 MD02G1002300.v1.1 MD02G1002400.v1.1 MD02G1002500.v1.1 MD02G1002600.v1.1 MD15G1145700.v1.1
prunus_persica Prupe.7G268600_v2.0.a1 Prupe.7G268700_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268800_v2.0.a1 Prupe.7G268900_v2.0.a1
pyrus_communis pycom02g00050 pycom02g00060 pycom02g00100 pycom02g00120 pycom02g00130 pycom15g13090 pycom15g13100
rosa_chinensis RchiOBHm_Chr1g0325321 RchiOBHm_Chr1g0325341 RchiOBHm_Chr1g0325351 RchiOBHm_Chr1g0325361 RchiOBHm_Chr1g0364881 RchiOBHm_Chr1g0364891 RchiOBHm_Chr2g0084701 RchiOBHm_Chr2g0084721 RchiOBHm_Chr2g0084731 RchiOBHm_Chr2g0084741 RchiOBHm_Chr2g0084751 RchiOBHm_Chr2g0084761 RchiOBHm_Chr2g0084771 RchiOBHm_Chr2g0085311 RchiOBHm_Chr2g0085321 RchiOBHm_Chr2g0085341 RchiOBHm_Chr2g0085351 RchiOBHm_Chr2g0117721 RchiOBHm_Chr2g0159631 RchiOBHm_Chr3g0484011 RchiOBHm_Chr5g0021141 RchiOBHm_Chr5g0061081 RchiOBHm_Chr6g0275731 RchiOBHm_Chr7g0238011
rosa_laevigata RLG00000013438 RLG00000015632 RLG00000015634 RLG00000015635 RLG00000015636 RLG00000015637 RLG00000015677 RLG00000015679 RLG00000030145 RLG00000030146 RLG00000035427
rosa_multiflora Rmu_co8334849.1_g000001 Rmu_sc0001366.1_g000035 Rmu_sc0002352.1_g000003 Rmu_sc0002352.1_g000004 Rmu_sc0002352.1_g000006 Rmu_sc0002352.1_g000007 Rmu_sc0002352.1_g000009 Rmu_sc0002586.1_g000008 Rmu_sc0004966.1_g000016 Rmu_sc0007122.1_g000001 Rmu_sc0008804.1_g000002 Rmu_sc0008883.1_g000001 Rmu_sc0010860.1_g000002 Rmu_sc0012119.1_g000001 Rmu_sc0012119.1_g000003 Rmu_sc0012119.1_g000006 Rmu_sc0012119.1_g000007 Rmu_sc0012119.1_g000009 Rmu_sc0020031.1_g000004 Rmu_sc0020800.1_g000005 Rmu_sc0020800.1_g000007 Rmu_sc0020800.1_g000008 Rmu_sc0020800.1_g000009 Rmu_sc0025597.1_g000001 Rmu_sc0029132.1_g000002
rosa_roxburghii Rroxscaffold_2G00155450 Rroxscaffold_2G00155460 Rroxscaffold_2G00155470 Rroxscaffold_2G00155830 Rroxscaffold_2G00155840 Rroxscaffold_2G00155850 Rroxscaffold_2G00155860 Rroxscaffold_2G00155870 Rroxscaffold_2G00155910 Rroxscaffold_3G00273850 Rroxscaffold_4G00324820 Rroxscaffold_7G00192930 Rroxscaffold_7G00192960
rosa_rugosa Rorug01G0051300 Rorug01G0051400 Rorug01G0455700 Rorug01G0455800 Rorug01G0455900 Rorug01G0459500 Rorug01G0459500 Rorug01G0459600 Rorug01G0459700 Rorug01G0459700 Rorug02G0335000
rosa_samantha Rh1AG066500 Rh1BG054700 Rh1BG054800 Rh1BG176600 Rh2BG004400 Rh2BG004500 Rh2BG004600 Rh2BG004700 Rh2BG008600 Rh2BG008700 Rh2CG004500 Rh2CG004700 Rh2CG004800 Rh2CG004900 Rh2CG005000 Rh2CG005100 Rh2CG005200 Rh2CG009300 Rh2CG009400 Rh2DG004200 Rh2DG004300 Rh2DG004400 Rh2DG004500 Rh2DG004600 Rh2DG009800 Rh5BG411800 Rh5CG167200 Rh5CG436800 Rh5CG578800 Rh6DG203800
rosa_wichuraiana Rw1G005560 Rw2G000320 Rw2G000350 Rw2G000360 Rw2G000370 Rw2G000750 Rw2G000760 Rw4G022130 Rw5G015810 Rw5G037620 Rw6G018120 Rw7G038530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 34
AclWI GGATC 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 1 cut(s) 109
AgsI TTSAA 1 cut(s) 55
AhlI ACTAGT 1 cut(s) 104
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 2 cut(s) 124, 216
AluI AGCT 2 cut(s) 124, 216
AlwI GGATC 1 cut(s) 176
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AsuHPI GGTGA 1 cut(s) 58
AsuNHI GCTAGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 252
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 3 cut(s) 105, 213, 268
BfuAI ACCTGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 252
BmtI GCTAGC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 207
BsaXI ACNNNNNCTCC 4 cut(s) 108, 138, 232, 262
Bse1I ACTGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 216
Bsp143I GATC 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 34
BspOI GCTAGC 1 cut(s) 216
BspPI GGATC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 214
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 250
BtsIMutI CAGTG 2 cut(s) 116, 138
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 108
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 113, 124, 212, 216
CviKI_1 RGCY 4 cut(s) 113, 124, 212, 216
CviQI GTAC 1 cut(s) 108
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 94
FaiI YATR 5 cut(s) 63, 92, 201, 203, 234
FatI CATG 1 cut(s) 90
FauNDI CATATG 1 cut(s) 201
FspBI CTAG 3 cut(s) 105, 213, 268
Hin1II CATG 1 cut(s) 94
HinfI GANTC 1 cut(s) 83
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 195, 253
HpyCH4V TGCA 1 cut(s) 94
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 6 cut(s) 29, 126, 140, 190, 237, 264
MaeI CTAG 3 cut(s) 105, 213, 268
MaeIII GTNAC 2 cut(s) 64, 263
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MfeI CAATTG 1 cut(s) 95
MluCI AATT 1 cut(s) 95
MnlI CCTC 3 cut(s) 27, 176, 237
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 252
NdeI CATATG 1 cut(s) 201
NdeII GATC 1 cut(s) 181
NheI GCTAGC 1 cut(s) 212
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 64, 263
NspI RCATGY 1 cut(s) 94
PaqCI CACCTGC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 83
PflFI GACNNNGTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 136
PsyI GACNNNGTC 1 cut(s) 62
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 252
SetI ASST 6 cut(s) 48, 126, 136, 168, 218, 245
SpeI ACTAGT 1 cut(s) 104
Sse9I AATT 1 cut(s) 95
SspMI CTAG 3 cut(s) 105, 213, 268
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 207
TaqII GACCGA 1 cut(s) 247
TasI AATT 1 cut(s) 95
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 1 cut(s) 83
TscAI CASTG 2 cut(s) 123, 145
TseFI GTSAC 2 cut(s) 64, 263
Tsp45I GTSAC 2 cut(s) 64, 263
TspRI CASTG 2 cut(s) 123, 145
Tth111I GACNNNGTC 1 cut(s) 62
XceI RCATGY 1 cut(s) 94
XspI CTAG 3 cut(s) 105, 213, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.